Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/SN_GATA3-PAX8_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for SN_GATA3-PAX8_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: SN_GATA3-PAX8_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_SN_GATA3-PAX8_GABA float

johansen2025Crossspecies_atac_macaque_SN_GATA3-PAX8_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_SN_GATA3-PAX8_GABA [0.156, 72.8]
n
901,057,991
mean
0.294
sd
0.377

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 90105799130.33% 73573303
NC_005943.1 1870 11.29% 178
NC_027914.1 869360 7.40% 77281
NC_041754.1 78260330 35.00% 6366305
NC_041755.1 60730510 30.95% 4958316
NC_041756.1 59155380 31.93% 4829622
NC_041757.1 50786870 29.88% 4156144
NC_041758.1 49658040 26.51% 4090746
NC_041759.1 53174470 29.69% 4354826
NC_041760.1 57999210 34.14% 4719967
NC_041761.1 44513380 30.56% 3638461
NC_041762.1 45271240 33.75% 3681402
NC_041763.1 38907270 39.10% 3145717
NC_041764.1 43455180 32.66% 3540127
NC_041765.1 39357176 30.26% 3221126
NC_041766.1 35662910 32.80% 2906840
NC_041767.1 43972350 34.34% 3584048
NC_041768.1 37513470 33.11% 3057949
NC_041769.1 32206850 40.45% 2607459
NC_041770.1 26302380 27.56% 2157291
NC_041771.1 22498960 30.21% 1837010
NC_041772.1 22403370 38.42% 1815549
NC_041773.1 29873835 38.73% 2419235
NC_041774.1 26477920 17.26% 2237040
NW_021160097.1 240 0.65% 21
NW_021160098.1 1370 3.43% 125
NW_021160099.1 620 1.53% 60
NW_021160102.1 2260 4.50% 209
NW_021160105.1 1540 2.81% 129
NW_021160106.1 4060 7.31% 353
NW_021160107.1 1900 3.42% 163
NW_021160109.1 4970 6.04% 438
NW_021160110.1 11570 9.79% 977
NW_021160111.1 16330 12.28% 1401
NW_021160113.1 37680 32.39% 3190
NW_021160114.1 7060 10.71% 612
NW_021160116.1 460 1.30% 44
NW_021160121.1 1360 1.58% 126
NW_021160122.1 3790 4.12% 345
NW_021160123.1 3140 5.93% 267
NW_021160125.1 120 0.47% 11
NW_021160136.1 1870 3.13% 162
NW_021160140.1 5630 4.32% 503
NW_021160141.1 5430 4.05% 481
NW_021160142.1 11410 23.86% 927
NW_021160144.1 88309 7.18% 7839
NW_021160145.1 1060 3.94% 95
NW_021160147.1 1560 5.19% 136
NW_021160148.1 3980 11.60% 324
NW_021160150.1 1950 5.20% 177
NW_021160155.1 2540 4.66% 215
NW_021160158.1 2520 3.34% 218
NW_021160159.1 6370 7.42% 557
NW_021160161.1 64652 8.76% 5473
NW_021160167.1 390 1.03% 32
NW_021160168.1 420 1.01% 34
NW_021160175.1 46610 25.18% 3759
NW_021160179.1 1750 4.50% 153
NW_021160182.1 4680 8.06% 356
NW_021160184.1 2290 3.74% 195
NW_021160185.1 1280 2.06% 115
NW_021160186.1 6700 10.39% 584
NW_021160187.1 990 1.30% 95
NW_021160188.1 4620 5.57% 384
NW_021160189.1 6270 6.19% 533
NW_021160190.1 4710 13.18% 373
NW_021160191.1 980 3.52% 87
NW_021160193.1 60 0.19% 6
NW_021160196.1 7095 15.39% 577
NW_021160197.1 3240 6.25% 283
NW_021160199.1 1670 2.99% 153
NW_021160200.1 1590 2.69% 148
NW_021160201.1 6350 10.33% 512
NW_021160202.1 2360 3.60% 203
NW_021160203.1 4300 5.96% 367
NW_021160204.1 6070 8.33% 517
NW_021160205.1 2330 3.18% 210
NW_021160206.1 3470 4.14% 293
NW_021160207.1 4160 4.21% 367
NW_021160209.1 17170 2.56% 1458
NW_021160211.1 8390 6.29% 728
NW_021160220.1 6560 9.83% 533
NW_021160221.1 2280 3.22% 196
NW_021160222.1 1440 1.89% 129
NW_021160223.1 11250 13.50% 901
NW_021160225.1 4940 9.18% 407
NW_021160226.1 1790 4.97% 152
NW_021160228.1 1580 3.30% 142
NW_021160229.1 4460 9.30% 368
NW_021160231.1 3460 6.35% 303
NW_021160233.1 3030 4.69% 261
NW_021160234.1 13230 20.18% 1093
NW_021160236.1 4310 5.54% 376
NW_021160237.1 15930 18.58% 1349
NW_021160238.1 11350 10.87% 936
NW_021160239.1 1120 3.84% 97
NW_021160242.1 1080 3.65% 94
NW_021160243.1 540 1.71% 46
NW_021160244.1 16240 46.11% 1348
NW_021160245.1 780 1.78% 71
NW_021160248.1 840 1.12% 77
NW_021160249.1 4350 5.75% 357
NW_021160250.1 1460 2.27% 134
NW_021160251.1 5830 6.91% 499
NW_021160252.1 7420 8.37% 617
NW_021160255.1 1710 6.09% 145
NW_021160263.1 1680 3.19% 148
NW_021160266.1 1710 2.28% 161
NW_021160268.1 3110 4.59% 278
NW_021160270.1 2610 7.49% 216
NW_021160271.1 1400 4.03% 120
NW_021160272.1 3130 8.94% 255
NW_021160273.1 1310 3.26% 114
NW_021160277.1 430 0.96% 42
NW_021160278.1 3450 6.20% 299
NW_021160279.1 3540 5.36% 317
NW_021160282.1 6450 5.21% 537
NW_021160284.1 680 1.95% 59
NW_021160285.1 1780 3.99% 160
NW_021160291.1 290 0.64% 29
NW_021160293.1 4700 8.90% 384
NW_021160294.1 6410 8.05% 559
NW_021160295.1 3100 3.76% 281
NW_021160297.1 3140 5.58% 277
NW_021160298.1 2040 7.49% 176
NW_021160300.1 5690 9.14% 474
NW_021160305.1 650 1.61% 62
NW_021160306.1 1590 4.03% 136
NW_021160307.1 3540 6.72% 307
NW_021160308.1 3290 6.10% 278
NW_021160310.1 18670 32.04% 1569
NW_021160311.1 8940 11.35% 764
NW_021160312.1 8580 9.70% 745
NW_021160313.1 7580 8.01% 643
NW_021160319.1 3590 8.26% 305
NW_021160320.1 3320 6.32% 293
NW_021160324.1 5720 8.99% 493
NW_021160325.1 4970 7.63% 431
NW_021160326.1 2240 3.44% 204
NW_021160327.1 4880 7.40% 418
NW_021160328.1 9820 15.51% 833
NW_021160329.1 4900 9.12% 393
NW_021160338.1 1090 2.90% 97
NW_021160339.1 660 1.71% 62
NW_021160341.1 3210 6.93% 273
NW_021160347.1 10100 6.11% 897
NW_021160353.1 3950 9.59% 324
NW_021160354.1 1210 2.88% 108
NW_021160355.1 2090 3.76% 187
NW_021160356.1 2230 2.92% 195
NW_021160357.1 840 2.76% 69
NW_021160358.1 3400 8.62% 289
NW_021160359.1 2700 6.58% 234
NW_021160361.1 830 1.76% 79
NW_021160362.1 1210 2.25% 110
NW_021160363.1 4230 6.94% 373
NW_021160364.1 4710 7.62% 399
NW_021160365.1 4850 7.30% 404
NW_021160366.1 4650 6.53% 408
NW_021160367.1 10430 13.65% 882
NW_021160368.1 2000 2.53% 174
NW_021160369.1 2200 2.69% 197
NW_021160370.1 6070 6.78% 517
NW_021160371.1 3110 3.44% 275
NW_021160372.1 11460 8.52% 976
NW_021160373.1 7570 13.02% 626
NW_021160374.1 9880 7.95% 834
NW_021160375.1 18880 10.27% 1586
NW_021160376.1 80790 9.36% 6871
NW_021160381.1 310 0.64% 30
NW_021160383.1 15797 22.90% 1317
NW_021160384.1 1340 1.68% 122
NW_021160401.1 810 4.98% 74
NW_021160410.1 4710 28.62% 389
NW_021160417.1 1100 1.94% 96
NW_021160452.1 1240 7.32% 106
NW_021160482.1 170 0.98% 17
NW_021160484.1 1320 7.59% 113
NW_021160495.1 50430 6.12% 4366
NW_021160514.1 910 5.05% 77
NW_021160523.1 270 1.49% 22
NW_021160525.1 1470 8.10% 121
NW_021160535.1 1280 6.98% 113
NW_021160549.1 1430 7.70% 117
NW_021160573.1 4420 23.22% 381
NW_021160589.1 180 0.94% 14
NW_021160606.1 24710 2.46% 2177
NW_021160623.1 210 1.06% 18
NW_021160625.1 120 0.61% 11
NW_021160629.1 60 0.30% 6
NW_021160635.1 200 1.00% 19
NW_021160655.1 2650 12.88% 215
NW_021160656.1 510 2.49% 46
NW_021160678.1 360 1.73% 33
NW_021160682.1 8150 39.32% 648
NW_021160688.1 2640 12.93% 224
NW_021160701.1 6180 29.13% 555
NW_021160725.1 390 1.80% 34
NW_021160726.1 12860 59.13% 1185
NW_021160734.1 280 1.29% 23
NW_021160757.1 70 0.32% 6
NW_021160770.1 12890 56.95% 1175
NW_021160772.1 890 3.92% 81
NW_021160805.1 4070 17.36% 338
NW_021160821.1 250 1.05% 24
NW_021160827.1 39580 5.39% 3296
NW_021160832.1 400 1.66% 35
NW_021160834.1 840 3.48% 76
NW_021160848.1 170 0.70% 15
NW_021160868.1 20 0.08% 2
NW_021160890.1 1450 5.74% 130
NW_021160903.1 3680 13.89% 312
NW_021160919.1 560 2.15% 45
NW_021160925.1 280 1.07% 28
NW_021160946.1 1350 5.10% 120
NW_021160955.1 1510 5.69% 134
NW_021160961.1 1110 4.15% 101
NW_021160976.1 3560 13.08% 300
NW_021160983.1 100 0.37% 10
NW_021161026.1 120 0.43% 12
NW_021161033.1 80 0.28% 8
NW_021161038.1 730 2.70% 62
NW_021161041.1 480 1.68% 43
NW_021161043.1 430 1.47% 38
NW_021161046.1 3030 10.27% 266
NW_021161062.1 250 0.84% 23
NW_021161066.1 4490 15.05% 374
NW_021161106.1 2750 8.97% 226
NW_021161107.1 940 3.06% 78
NW_021161113.1 4240 12.57% 358
NW_021161114.1 5760 18.67% 501
NW_021161131.1 50 0.16% 5
NW_021161133.1 3290 2.21% 297
NW_021161138.1 240 0.77% 23
NW_021161152.1 1440 4.58% 127
NW_021161164.1 2320 7.18% 202
NW_021161166.1 2770 8.52% 228
NW_021161184.1 630 2.13% 55
NW_021161201.1 1080 3.25% 92
NW_021161211.1 1550 4.65% 141
NW_021161213.1 180 0.54% 18
NW_021161224.1 3660 10.86% 298
NW_021161226.1 3740 11.22% 314
NW_021161241.1 470 1.37% 42
NW_021161247.1 40 0.12% 4
NW_021161253.1 70 0.20% 5
NW_021161261.1 440 1.26% 43
NW_021161269.1 4930 14.05% 421
NW_021161282.1 11500 29.58% 957
NW_021161303.1 790 2.19% 71
NW_021161305.1 430 1.19% 35
NW_021161307.1 590 2.22% 53
NW_021161312.1 100 0.28% 9
NW_021161320.1 6320 6.43% 538
NW_021161336.1 3370 9.14% 284
NW_021161338.1 470 1.26% 47
NW_021161340.1 990 2.69% 92
NW_021161348.1 3120 8.33% 258
NW_021161355.1 4060 10.51% 339
NW_021161360.1 320 0.85% 25
NW_021161364.1 1690 4.43% 148
NW_021161377.1 9270 23.32% 757
NW_021161379.1 90 0.24% 9
NW_021161380.1 140 0.44% 13
NW_021161385.1 340 0.88% 31
NW_021161392.1 6100 15.59% 541
NW_021161394.1 2460 6.34% 216
NW_021161396.1 190 0.49% 16
NW_021161399.1 1320 6.02% 112
NW_021161404.1 480 1.22% 41
NW_021161413.1 1000 2.52% 82
NW_021161421.1 330 0.83% 29
NW_021161422.1 240 0.61% 19
NW_021161427.1 1080 2.69% 95
NW_021161433.1 120 0.30% 11
NW_021161437.1 570 1.90% 51
NW_021161446.1 810 1.98% 70
NW_021161463.1 60 0.14% 6
NW_021161468.1 1210 2.88% 106
NW_021161470.1 180 0.43% 18
NW_021161483.1 20 0.05% 2
NW_021161486.1 4340 10.20% 342
NW_021161494.1 650 1.52% 58
NW_021161497.1 730 1.70% 65
NW_021161505.1 3200 7.43% 274
NW_021161507.1 3450 7.97% 292
NW_021161508.1 9304 21.56% 766
NW_021161519.1 4200 9.58% 365
NW_021161520.1 2180 5.06% 189
NW_021161523.1 1430 3.31% 126
NW_021161525.1 4730 10.74% 390
NW_021161526.1 5980 13.58% 511
NW_021161532.1 580 1.30% 53
NW_021161535.1 770 1.72% 62
NW_021161537.1 9070 20.45% 756
NW_021161545.1 11329 25.36% 991
NW_021161552.1 550 1.29% 48
NW_021161554.1 2120 4.70% 191
NW_021161561.1 4790 10.60% 398
NW_021161562.1 5460 12.01% 443
NW_021161567.1 1320 2.90% 116
NW_021161570.1 50 0.11% 4
NW_021161582.1 7950 17.31% 682
NW_021161585.1 7670 16.64% 646
NW_021161590.1 14460 31.43% 1152
NW_021161593.1 10550 22.67% 885
NW_021161596.1 33530 6.22% 2856
NW_021161601.1 3450 7.34% 291
NW_021161608.1 860 1.84% 73
NW_021161609.1 260 0.55% 22
NW_021161614.1 1240 2.60% 112
NW_021161616.1 3530 7.38% 308
NW_021161617.1 120 0.25% 12
NW_021161627.1 3020 9.03% 261
NW_021161633.1 10990 22.24% 922
NW_021161642.1 2000 4.02% 181
NW_021161648.1 16010 31.46% 1355
NW_021161679.1 3480 6.68% 292
NW_021161680.1 1610 3.11% 142
NW_021161686.1 10540 7.79% 891
NW_021161694.1 1270 2.79% 110
NW_021161695.1 1530 2.86% 138
NW_021161696.1 1340 2.53% 122
NW_021161699.1 5594 11.57% 471
NW_021161700.1 340 0.64% 30
NW_021161713.1 420 0.78% 37
NW_021161715.1 340 0.62% 34
NW_021161718.1 9080 16.67% 740
NW_021161725.1 4360 13.86% 351
NW_021161737.1 1420 2.54% 129
NW_021161743.1 1010 1.80% 91
NW_021161747.1 230 0.41% 23
NW_021161754.1 8940 15.63% 748
NW_021161759.1 360 0.63% 36
NW_021161767.1 8350 8.18% 717
NW_021161769.1 2240 3.86% 201
NW_021161772.1 2400 3.25% 203
NW_021161784.1 600 11.66% 50
NW_021161790.1 9700 16.07% 800
NW_021161794.1 370 0.61% 34
NW_021161796.1 1030 1.71% 95
NW_021161798.1 1980 4.21% 171
NW_021161830.1 4210 9.41% 356
NW_021161832.1 1830 2.89% 163
NW_021161839.1 1200 1.87% 108
NW_021161842.1 3430 5.26% 310
NW_021161843.1 2120 3.25% 186
NW_021161845.1 11335 17.33% 920
NW_021161850.1 160230 14.34% 13641
NW_021161853.1 7120 10.79% 588
NW_021161857.1 6000 9.04% 502
NW_021161862.1 950 1.44% 84
NW_021161876.1 4940 7.23% 426
NW_021161878.1 5650 8.31% 487
NW_021161881.1 5270 8.75% 435
NW_021161888.1 7440 10.72% 622
NW_021161902.1 7760 11.97% 649
NW_021161927.1 3870 5.17% 334
NW_021161934.1 4770 6.33% 415
NW_021161939.1 10230 13.51% 844
NW_021161954.1 5450 7.07% 474
NW_021161955.1 3520 4.54% 299
NW_021161956.1 9280 12.15% 794
NW_021161958.1 11370 14.48% 952
NW_021161961.1 5200 6.65% 461
NW_021161962.1 1140 1.43% 100
NW_021161965.1 4930 6.24% 429
NW_021161996.1 3280 3.82% 283
NW_021162004.1 890 3.13% 76
NW_021162007.1 2990 3.40% 276
NW_021162009.1 22330 25.61% 1864
NW_021162025.1 5500 6.17% 478
NW_021162035.1 1180 1.26% 111
NW_021162047.1 3400 3.55% 299
NW_021162055.1 10680 10.73% 903
NW_021162083.1 8710 5.06% 752
NW_021162091.1 13170 11.61% 1093
NW_021162100.1 12980 10.33% 1144
NW_021162108.1 10840 34.01% 847
NW_021162157.1 1730 2.87% 152
NW_021162208.1 380 0.15% 38
NW_021162222.1 1370 3.62% 127
NW_021162226.1 960 2.20% 93
NW_021162246.1 25780 24.40% 2104
NW_021162251.1 19260 26.97% 1576
NW_021162253.1 130 0.42% 13
NW_021162263.1 380 1.43% 28
NW_021162265.1 7320 18.94% 591
NW_021162274.1 23350 23.00% 1988
NW_021162277.1 2010 8.08% 168
NW_021162463.1 320 4.24% 29
NW_021162495.1 60 0.91% 6
NW_021162553.1 220 2.54% 18
NW_021162593.1 110 1.18% 10
NW_021162599.1 3130 33.39% 272
NW_021162621.1 480 4.91% 40
NW_021162643.1 6625 26.07% 535
NW_021162814.1 170 1.37% 15
NW_021162871.1 1010 7.28% 77
NW_021162949.1 20 0.13% 2
NW_021163002.1 40 0.25% 4
2539 contigs with no values (90236091 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 73573303 2 150 12.25 10
global segment-length histogram

Files

Filename Size md5
SN_GATA3-PAX8_GABA.bw 514.9 MB 391a270c028c98185f1ad4d0a87732f2
genomic_resource.yaml 1.13 KB cd0facddc736187e9f46a238d8718a24
statistics/