Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/SN_GATA3-PVALB_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for SN_GATA3-PVALB_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: SN_GATA3-PVALB_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_SN_GATA3-PVALB_GABA float

johansen2025Crossspecies_atac_macaque_SN_GATA3-PVALB_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_SN_GATA3-PVALB_GABA [0.177, 70.1]
n
835,439,863
mean
0.328
sd
0.407

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 83543986328.12% 68574239
NC_005943.1 1700 10.26% 155
NC_027914.1 958020 8.15% 84978
NC_041754.1 72348940 32.35% 5919422
NC_041755.1 56480590 28.79% 4640065
NC_041756.1 55630007 30.02% 4560455
NC_041757.1 48537300 28.56% 3990052
NC_041758.1 48398000 25.84% 4001844
NC_041759.1 50486330 28.19% 4154449
NC_041760.1 53080450 31.25% 4344775
NC_041761.1 42122080 28.91% 3458666
NC_041762.1 41254980 30.76% 3373550
NC_041763.1 33877550 34.04% 2752805
NC_041764.1 40037960 30.09% 3280318
NC_041765.1 37350046 28.72% 3069237
NC_041766.1 32948500 30.30% 2699602
NC_041767.1 40620300 31.72% 3327990
NC_041768.1 34758720 30.68% 2846424
NC_041769.1 28495940 35.79% 2316668
NC_041770.1 24647350 25.83% 2034480
NC_041771.1 21167040 28.42% 1738217
NC_041772.1 19357010 33.19% 1575326
NC_041773.1 26409910 34.24% 2151320
NC_041774.1 24667100 16.08% 2099125
NW_021160097.1 120 0.32% 11
NW_021160098.1 1040 2.60% 94
NW_021160099.1 440 1.09% 40
NW_021160102.1 2240 4.46% 201
NW_021160105.1 1510 2.75% 132
NW_021160106.1 2960 5.33% 259
NW_021160107.1 1530 2.75% 141
NW_021160109.1 4420 5.37% 384
NW_021160110.1 9680 8.19% 836
NW_021160111.1 18280 13.74% 1561
NW_021160113.1 33850 29.10% 2802
NW_021160114.1 5490 8.33% 488
NW_021160116.1 230 0.65% 19
NW_021160121.1 1340 1.55% 112
NW_021160122.1 2960 3.22% 275
NW_021160123.1 2260 4.27% 200
NW_021160125.1 190 0.75% 18
NW_021160136.1 1830 3.06% 162
NW_021160140.1 5440 4.18% 478
NW_021160141.1 4940 3.68% 448
NW_021160142.1 10640 22.25% 848
NW_021160144.1 85489 6.95% 7690
NW_021160145.1 830 3.09% 74
NW_021160147.1 1340 4.46% 116
NW_021160148.1 4100 11.95% 327
NW_021160150.1 2030 5.41% 182
NW_021160155.1 2020 3.70% 176
NW_021160158.1 2500 3.32% 223
NW_021160159.1 6330 7.38% 542
NW_021160161.1 63902 8.65% 5445
NW_021160167.1 160 0.42% 15
NW_021160168.1 320 0.77% 27
NW_021160175.1 36490 19.71% 3068
NW_021160179.1 1650 4.24% 140
NW_021160182.1 4290 7.39% 357
NW_021160184.1 2340 3.82% 203
NW_021160185.1 990 1.59% 91
NW_021160186.1 3960 6.14% 340
NW_021160187.1 740 0.97% 70
NW_021160188.1 3950 4.76% 338
NW_021160189.1 5500 5.43% 479
NW_021160190.1 3650 10.21% 293
NW_021160191.1 830 2.98% 69
NW_021160193.1 80 0.26% 8
NW_021160196.1 5610 12.17% 461
NW_021160197.1 2450 4.73% 218
NW_021160199.1 1930 3.45% 175
NW_021160200.1 1310 2.22% 121
NW_021160201.1 4910 7.99% 410
NW_021160202.1 1870 2.86% 165
NW_021160203.1 3340 4.63% 276
NW_021160204.1 5890 8.09% 511
NW_021160205.1 1710 2.33% 151
NW_021160206.1 2530 3.02% 213
NW_021160207.1 3990 4.04% 356
NW_021160209.1 16380 2.44% 1395
NW_021160211.1 7090 5.32% 619
NW_021160220.1 6080 9.11% 507
NW_021160221.1 2030 2.86% 179
NW_021160222.1 1700 2.23% 149
NW_021160223.1 8290 9.95% 690
NW_021160225.1 5640 10.48% 474
NW_021160226.1 1740 4.83% 154
NW_021160228.1 1120 2.34% 107
NW_021160229.1 2760 5.75% 249
NW_021160231.1 2790 5.12% 244
NW_021160233.1 2250 3.48% 198
NW_021160234.1 11750 17.93% 976
NW_021160236.1 3560 4.58% 312
NW_021160237.1 14610 17.04% 1208
NW_021160238.1 10880 10.42% 941
NW_021160239.1 1180 4.05% 110
NW_021160242.1 810 2.74% 67
NW_021160243.1 640 2.03% 53
NW_021160244.1 14280 40.55% 1203
NW_021160245.1 560 1.28% 52
NW_021160248.1 1050 1.40% 98
NW_021160249.1 3330 4.40% 285
NW_021160250.1 1510 2.35% 130
NW_021160251.1 5200 6.16% 437
NW_021160252.1 5600 6.32% 486
NW_021160255.1 1460 5.20% 125
NW_021160263.1 1640 3.12% 144
NW_021160266.1 1850 2.47% 167
NW_021160268.1 3390 5.01% 300
NW_021160270.1 2210 6.35% 183
NW_021160271.1 1190 3.42% 104
NW_021160272.1 2900 8.29% 242
NW_021160273.1 1280 3.18% 112
NW_021160277.1 360 0.80% 34
NW_021160278.1 3570 6.42% 304
NW_021160279.1 2790 4.23% 256
NW_021160282.1 5610 4.53% 479
NW_021160284.1 490 1.41% 46
NW_021160285.1 1420 3.18% 126
NW_021160291.1 570 1.26% 52
NW_021160293.1 3610 6.83% 317
NW_021160294.1 5270 6.62% 437
NW_021160295.1 3710 4.49% 325
NW_021160297.1 3120 5.55% 262
NW_021160298.1 1810 6.64% 164
NW_021160300.1 5170 8.30% 432
NW_021160305.1 370 0.92% 36
NW_021160306.1 1210 3.07% 104
NW_021160307.1 2410 4.57% 216
NW_021160308.1 3430 6.36% 292
NW_021160310.1 16630 28.54% 1412
NW_021160311.1 7420 9.42% 615
NW_021160312.1 6840 7.74% 602
NW_021160313.1 4170 4.41% 368
NW_021160319.1 3400 7.83% 278
NW_021160320.1 2320 4.41% 198
NW_021160324.1 5220 8.21% 461
NW_021160325.1 4860 7.46% 419
NW_021160326.1 2360 3.62% 199
NW_021160327.1 3610 5.47% 305
NW_021160328.1 8430 13.31% 701
NW_021160329.1 3460 6.44% 296
NW_021160338.1 540 1.44% 51
NW_021160339.1 530 1.38% 46
NW_021160341.1 3070 6.63% 276
NW_021160347.1 8140 4.93% 718
NW_021160353.1 3700 8.99% 317
NW_021160354.1 930 2.22% 85
NW_021160355.1 2140 3.85% 189
NW_021160356.1 1950 2.56% 175
NW_021160357.1 480 1.58% 44
NW_021160358.1 2640 6.69% 230
NW_021160359.1 2450 5.97% 212
NW_021160361.1 740 1.57% 68
NW_021160362.1 1170 2.18% 108
NW_021160363.1 3500 5.74% 307
NW_021160364.1 3930 6.36% 350
NW_021160365.1 3720 5.60% 319
NW_021160366.1 4110 5.77% 373
NW_021160367.1 8850 11.59% 736
NW_021160368.1 2010 2.55% 176
NW_021160369.1 1300 1.59% 110
NW_021160370.1 5600 6.26% 491
NW_021160371.1 2590 2.86% 226
NW_021160372.1 10010 7.45% 870
NW_021160373.1 6010 10.33% 498
NW_021160374.1 8980 7.22% 786
NW_021160375.1 17280 9.40% 1457
NW_021160376.1 80450 9.32% 6813
NW_021160381.1 120 0.25% 11
NW_021160383.1 14720 21.33% 1234
NW_021160384.1 1040 1.31% 92
NW_021160401.1 400 2.46% 37
NW_021160410.1 4570 27.77% 375
NW_021160417.1 1340 2.37% 119
NW_021160452.1 1330 7.86% 99
NW_021160482.1 190 1.10% 15
NW_021160484.1 1190 6.84% 104
NW_021160495.1 37610 4.57% 3282
NW_021160514.1 740 4.11% 65
NW_021160523.1 180 1.00% 18
NW_021160525.1 1450 7.99% 126
NW_021160535.1 1240 6.77% 113
NW_021160549.1 1150 6.19% 100
NW_021160573.1 3640 19.12% 312
NW_021160589.1 80 0.42% 8
NW_021160606.1 23180 2.30% 2084
NW_021160623.1 170 0.86% 17
NW_021160625.1 60 0.30% 6
NW_021160629.1 150 0.75% 15
NW_021160635.1 180 0.90% 16
NW_021160655.1 2490 12.10% 211
NW_021160656.1 360 1.76% 34
NW_021160678.1 220 1.06% 21
NW_021160682.1 6490 31.31% 527
NW_021160688.1 2140 10.48% 188
NW_021160701.1 5430 25.59% 475
NW_021160725.1 220 1.02% 21
NW_021160726.1 12690 58.35% 1150
NW_021160734.1 440 2.02% 40
NW_021160757.1 20 0.09% 2
NW_021160770.1 11520 50.90% 1055
NW_021160772.1 600 2.65% 53
NW_021160805.1 4560 19.45% 389
NW_021160821.1 300 1.25% 29
NW_021160827.1 35180 4.79% 2944
NW_021160832.1 310 1.29% 27
NW_021160834.1 880 3.65% 82
NW_021160848.1 280 1.15% 24
NW_021160868.1 20 0.08% 2
NW_021160890.1 1670 6.61% 146
NW_021160903.1 3320 12.53% 283
NW_021160919.1 430 1.65% 38
NW_021160925.1 450 1.73% 40
NW_021160946.1 1190 4.50% 100
NW_021160955.1 1150 4.33% 103
NW_021160961.1 810 3.03% 75
NW_021160976.1 3570 13.12% 296
NW_021160986.1 20 0.07% 2
NW_021161026.1 60 0.22% 6
NW_021161033.1 80 0.28% 8
NW_021161038.1 740 2.73% 66
NW_021161041.1 440 1.54% 41
NW_021161043.1 370 1.27% 36
NW_021161046.1 2860 9.69% 260
NW_021161062.1 280 0.95% 23
NW_021161066.1 4470 14.98% 366
NW_021161106.1 2320 7.57% 194
NW_021161107.1 530 1.72% 41
NW_021161113.1 2770 8.21% 236
NW_021161114.1 5110 16.56% 440
NW_021161131.1 80 0.26% 7
NW_021161133.1 3250 2.19% 298
NW_021161138.1 140 0.45% 13
NW_021161152.1 1010 3.21% 88
NW_021161164.1 2190 6.78% 190
NW_021161166.1 2590 7.97% 226
NW_021161184.1 460 1.56% 38
NW_021161201.1 1090 3.28% 92
NW_021161211.1 1380 4.14% 123
NW_021161213.1 200 0.60% 20
NW_021161224.1 2590 7.68% 216
NW_021161226.1 3340 10.02% 268
NW_021161241.1 450 1.31% 42
NW_021161253.1 60 0.17% 4
NW_021161261.1 390 1.12% 34
NW_021161269.1 3850 10.97% 328
NW_021161282.1 11350 29.20% 947
NW_021161303.1 250 0.69% 25
NW_021161305.1 280 0.78% 26
NW_021161307.1 610 2.30% 57
NW_021161312.1 230 0.64% 21
NW_021161320.1 5200 5.29% 447
NW_021161336.1 3430 9.30% 294
NW_021161338.1 470 1.26% 45
NW_021161340.1 890 2.42% 75
NW_021161348.1 2410 6.44% 206
NW_021161355.1 3160 8.18% 276
NW_021161360.1 150 0.40% 14
NW_021161364.1 1380 3.61% 124
NW_021161377.1 9320 23.44% 762
NW_021161379.1 120 0.31% 10
NW_021161380.1 200 0.63% 19
NW_021161385.1 440 1.13% 38
NW_021161392.1 5290 13.52% 464
NW_021161394.1 2120 5.46% 182
NW_021161396.1 80 0.20% 8
NW_021161399.1 1440 6.57% 121
NW_021161404.1 800 2.03% 72
NW_021161413.1 1230 3.11% 111
NW_021161421.1 200 0.50% 18
NW_021161422.1 170 0.43% 16
NW_021161427.1 920 2.29% 84
NW_021161433.1 90 0.22% 8
NW_021161437.1 380 1.26% 34
NW_021161446.1 520 1.27% 49
NW_021161463.1 70 0.17% 7
NW_021161468.1 1010 2.41% 88
NW_021161470.1 250 0.60% 22
NW_021161483.1 60 0.14% 6
NW_021161486.1 3930 9.23% 322
NW_021161494.1 640 1.49% 58
NW_021161497.1 470 1.09% 41
NW_021161505.1 3010 6.98% 255
NW_021161507.1 2920 6.75% 243
NW_021161508.1 9304 21.56% 759
NW_021161519.1 2830 6.45% 255
NW_021161520.1 2000 4.64% 186
NW_021161523.1 1370 3.17% 119
NW_021161525.1 4450 10.11% 375
NW_021161526.1 5500 12.49% 474
NW_021161532.1 290 0.65% 28
NW_021161535.1 330 0.74% 31
NW_021161537.1 7860 17.72% 645
NW_021161545.1 10530 23.57% 891
NW_021161552.1 450 1.06% 41
NW_021161554.1 1800 3.99% 168
NW_021161561.1 4430 9.80% 355
NW_021161562.1 5060 11.13% 417
NW_021161567.1 920 2.02% 80
NW_021161570.1 70 0.15% 6
NW_021161582.1 8240 17.94% 692
NW_021161585.1 6780 14.71% 566
NW_021161590.1 12880 27.99% 1046
NW_021161593.1 9130 19.62% 764
NW_021161596.1 33090 6.14% 2838
NW_021161601.1 2640 5.61% 228
NW_021161608.1 1090 2.33% 96
NW_021161609.1 390 0.83% 31
NW_021161614.1 1050 2.20% 91
NW_021161616.1 3600 7.52% 328
NW_021161617.1 160 0.33% 16
NW_021161627.1 2910 8.70% 242
NW_021161633.1 9750 19.73% 814
NW_021161642.1 1550 3.11% 141
NW_021161648.1 13870 27.26% 1144
NW_021161679.1 3500 6.71% 293
NW_021161680.1 1500 2.90% 130
NW_021161686.1 10500 7.76% 908
NW_021161694.1 1090 2.40% 98
NW_021161695.1 2050 3.84% 186
NW_021161696.1 1400 2.64% 123
NW_021161699.1 4244 8.78% 375
NW_021161700.1 260 0.49% 25
NW_021161713.1 290 0.54% 29
NW_021161715.1 410 0.75% 38
NW_021161718.1 9270 17.01% 759
NW_021161725.1 4430 14.08% 379
NW_021161737.1 1010 1.81% 90
NW_021161743.1 1010 1.80% 87
NW_021161747.1 430 0.76% 41
NW_021161754.1 7380 12.90% 622
NW_021161759.1 240 0.42% 24
NW_021161767.1 8960 8.78% 759
NW_021161769.1 2090 3.60% 192
NW_021161772.1 2360 3.19% 201
NW_021161784.1 530 10.30% 47
NW_021161790.1 9460 15.68% 775
NW_021161794.1 470 0.78% 42
NW_021161796.1 940 1.56% 89
NW_021161798.1 2110 4.48% 175
NW_021161830.1 4450 9.94% 385
NW_021161832.1 1520 2.40% 135
NW_021161839.1 1280 2.00% 114
NW_021161842.1 3110 4.77% 283
NW_021161843.1 2400 3.68% 209
NW_021161845.1 9020 13.79% 758
NW_021161850.1 146361 13.10% 12503
NW_021161853.1 6250 9.47% 512
NW_021161857.1 4900 7.39% 405
NW_021161862.1 810 1.22% 75
NW_021161876.1 6250 9.15% 524
NW_021161878.1 4490 6.60% 375
NW_021161881.1 5580 9.26% 471
NW_021161888.1 7570 10.90% 634
NW_021161902.1 8140 12.56% 688
NW_021161927.1 3810 5.09% 327
NW_021161934.1 5230 6.94% 440
NW_021161939.1 9480 12.52% 789
NW_021161954.1 4000 5.19% 333
NW_021161955.1 3080 3.97% 270
NW_021161956.1 8040 10.53% 676
NW_021161958.1 8540 10.87% 708
NW_021161961.1 5860 7.49% 489
NW_021161962.1 1220 1.53% 108
NW_021161965.1 5600 7.09% 475
NW_021161996.1 2950 3.43% 245
NW_021162004.1 770 2.71% 68
NW_021162007.1 2850 3.24% 257
NW_021162009.1 18960 21.75% 1578
NW_021162025.1 4570 5.13% 380
NW_021162035.1 1150 1.23% 111
NW_021162047.1 2930 3.06% 261
NW_021162055.1 7840 7.88% 673
NW_021162083.1 9940 5.77% 844
NW_021162091.1 11660 10.28% 944
NW_021162100.1 11940 9.50% 1037
NW_021162108.1 8060 25.29% 656
NW_021162157.1 1380 2.29% 125
NW_021162208.1 470 0.19% 45
NW_021162222.1 1030 2.72% 98
NW_021162226.1 1000 2.29% 91
NW_021162246.1 22280 21.09% 1831
NW_021162251.1 16180 22.66% 1348
NW_021162253.1 80 0.26% 8
NW_021162263.1 160 0.60% 16
NW_021162265.1 6830 17.67% 553
NW_021162274.1 21770 21.44% 1839
NW_021162277.1 1700 6.83% 155
NW_021162460.1 20 0.27% 2
NW_021162463.1 260 3.44% 24
NW_021162495.1 140 2.13% 14
NW_021162553.1 390 4.50% 37
NW_021162593.1 170 1.83% 17
NW_021162599.1 2540 27.09% 209
NW_021162621.1 410 4.20% 36
NW_021162643.1 5520 21.72% 468
NW_021162814.1 290 2.34% 23
NW_021162871.1 820 5.91% 71
NW_021163002.1 20 0.13% 2
2540 contigs with no values (90277787 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 68574239 1 170 12.18 10
global segment-length histogram

Files

Filename Size md5
SN_GATA3-PVALB_GABA.bw 497.14 MB 228e97cd20f476413a4386a7b95abdee
genomic_resource.yaml 1.14 KB ad0e0de11dd4443ae83522390f3df62a
statistics/