Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/SN_SOX6_Dopa/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for SN_SOX6_Dopa cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: SN_SOX6_Dopa
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_SN_SOX6_Dopa float

johansen2025Crossspecies_atac_macaque_SN_SOX6_Dopa

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_SN_SOX6_Dopa [0.0475, 72.2]
n
1,580,963,010
mean
0.165
sd
0.302

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 158096301053.21% 132433283
NC_005943.1 2060 12.44% 185
NC_027914.1 2383620 20.28% 197201
NC_041754.1 134289510 60.05% 11315899
NC_041755.1 108281960 55.19% 9050253
NC_041756.1 104950290 56.64% 8791900
NC_041757.1 91946400 54.10% 7662175
NC_041758.1 93666970 50.00% 7772788
NC_041759.1 95628090 53.40% 7979304
NC_041760.1 99302300 58.46% 8342935
NC_041761.1 79848910 54.81% 6666070
NC_041762.1 77724560 57.95% 6527593
NC_041763.1 62878740 63.18% 5320690
NC_041764.1 75346760 56.62% 6306434
NC_041765.1 71363026 54.88% 5954738
NC_041766.1 61982210 57.00% 5194741
NC_041767.1 74786266 58.40% 6294363
NC_041768.1 65072230 57.44% 5466659
NC_041769.1 51044450 64.10% 4341757
NC_041770.1 46403540 48.62% 3856857
NC_041771.1 40828680 54.82% 3408688
NC_041772.1 35193540 60.35% 2988096
NC_041773.1 48597415 63.00% 4107857
NC_041774.1 55303810 36.05% 4536952
NW_021160097.1 580 1.57% 52
NW_021160098.1 3460 8.65% 299
NW_021160099.1 1490 3.68% 141
NW_021160102.1 4700 9.36% 397
NW_021160105.1 4620 8.42% 402
NW_021160106.1 7660 13.79% 649
NW_021160107.1 4460 8.02% 379
NW_021160109.1 10700 13.00% 917
NW_021160110.1 22240 18.83% 1845
NW_021160111.1 37375 28.10% 3050
NW_021160113.1 56300 48.40% 4963
NW_021160114.1 13330 20.22% 1119
NW_021160116.1 2380 6.72% 204
NW_021160121.1 3740 4.34% 327
NW_021160122.1 9290 10.09% 800
NW_021160123.1 6590 12.45% 560
NW_021160125.1 400 1.58% 38
NW_021160136.1 3980 6.66% 325
NW_021160140.1 12790 9.82% 1082
NW_021160141.1 14950 11.14% 1266
NW_021160142.1 23250 48.63% 1948
NW_021160144.1 255089 20.74% 21699
NW_021160145.1 2790 10.38% 227
NW_021160147.1 3540 11.79% 295
NW_021160148.1 7000 20.40% 604
NW_021160150.1 3330 8.88% 296
NW_021160155.1 4330 7.94% 369
NW_021160158.1 5750 7.63% 472
NW_021160159.1 15080 17.58% 1238
NW_021160161.1 148632 20.13% 12281
NW_021160167.1 1000 2.64% 82
NW_021160168.1 1110 2.67% 96
NW_021160175.1 80870 43.68% 6615
NW_021160179.1 3390 8.72% 294
NW_021160182.1 8820 15.18% 745
NW_021160184.1 4360 7.11% 363
NW_021160185.1 2390 3.85% 210
NW_021160186.1 12080 18.73% 1013
NW_021160187.1 2840 3.72% 254
NW_021160188.1 14710 17.73% 1211
NW_021160189.1 10810 10.67% 914
NW_021160190.1 8250 23.09% 693
NW_021160191.1 2300 8.26% 190
NW_021160193.1 880 2.82% 73
NW_021160196.1 13410 29.09% 1108
NW_021160197.1 6450 12.45% 533
NW_021160199.1 4930 8.82% 426
NW_021160200.1 3450 5.85% 294
NW_021160201.1 14130 23.00% 1197
NW_021160202.1 3890 5.94% 336
NW_021160203.1 9700 13.43% 788
NW_021160204.1 13090 17.97% 1109
NW_021160205.1 5160 7.04% 434
NW_021160206.1 6000 7.16% 509
NW_021160207.1 10180 10.30% 847
NW_021160209.1 39020 5.82% 3292
NW_021160211.1 14900 11.18% 1264
NW_021160220.1 11530 17.28% 977
NW_021160221.1 9910 13.98% 853
NW_021160222.1 4640 6.08% 394
NW_021160223.1 18680 22.42% 1570
NW_021160225.1 11490 21.34% 939
NW_021160226.1 3090 8.58% 270
NW_021160228.1 3030 6.33% 269
NW_021160229.1 9800 20.43% 799
NW_021160231.1 6480 11.89% 539
NW_021160233.1 5500 8.51% 454
NW_021160234.1 19740 30.12% 1735
NW_021160236.1 8690 11.17% 740
NW_021160237.1 28040 32.71% 2357
NW_021160238.1 20180 19.32% 1701
NW_021160239.1 2700 9.26% 234
NW_021160242.1 1880 6.36% 152
NW_021160243.1 1670 5.30% 142
NW_021160244.1 21010 59.65% 1905
NW_021160245.1 1900 4.34% 171
NW_021160248.1 2910 3.89% 263
NW_021160249.1 9260 12.23% 799
NW_021160250.1 3230 5.02% 274
NW_021160251.1 11880 14.07% 961
NW_021160252.1 16860 19.02% 1391
NW_021160255.1 3560 12.68% 307
NW_021160263.1 5020 9.54% 436
NW_021160266.1 3490 4.65% 313
NW_021160268.1 5440 8.03% 462
NW_021160270.1 4530 13.01% 367
NW_021160271.1 2140 6.16% 176
NW_021160272.1 5120 14.63% 447
NW_021160273.1 3610 8.98% 313
NW_021160277.1 1150 2.56% 108
NW_021160278.1 9850 17.70% 837
NW_021160279.1 8320 12.61% 691
NW_021160282.1 14140 11.43% 1185
NW_021160284.1 1460 4.20% 115
NW_021160285.1 3470 7.78% 300
NW_021160291.1 1330 2.94% 110
NW_021160293.1 8370 15.84% 706
NW_021160294.1 11630 14.61% 965
NW_021160295.1 6430 7.79% 569
NW_021160297.1 7430 13.21% 636
NW_021160298.1 4180 15.34% 353
NW_021160300.1 9880 15.87% 819
NW_021160305.1 2750 6.82% 238
NW_021160306.1 3560 9.02% 300
NW_021160307.1 6460 12.26% 556
NW_021160308.1 6910 12.81% 585
NW_021160310.1 27000 46.34% 2426
NW_021160311.1 17480 22.20% 1457
NW_021160312.1 14120 15.97% 1211
NW_021160313.1 11050 11.68% 913
NW_021160319.1 6850 15.77% 576
NW_021160320.1 6800 12.94% 574
NW_021160324.1 13250 20.83% 1112
NW_021160325.1 11670 17.91% 958
NW_021160326.1 4370 6.71% 378
NW_021160327.1 8910 13.50% 783
NW_021160328.1 14850 23.45% 1285
NW_021160329.1 10040 18.70% 868
NW_021160338.1 1960 5.22% 169
NW_021160339.1 1120 2.91% 95
NW_021160341.1 6260 13.52% 512
NW_021160347.1 20460 12.38% 1713
NW_021160353.1 7090 17.22% 583
NW_021160354.1 2610 6.22% 222
NW_021160355.1 5520 9.94% 464
NW_021160356.1 6640 8.70% 559
NW_021160357.1 1670 5.48% 145
NW_021160358.1 5590 14.17% 470
NW_021160359.1 6780 16.51% 567
NW_021160361.1 2550 5.42% 220
NW_021160362.1 2120 3.95% 194
NW_021160363.1 8150 13.38% 691
NW_021160364.1 8460 13.69% 717
NW_021160365.1 8920 13.43% 750
NW_021160366.1 10560 14.82% 882
NW_021160367.1 17990 23.55% 1521
NW_021160368.1 4980 6.31% 413
NW_021160369.1 7500 9.17% 619
NW_021160370.1 12020 13.43% 1018
NW_021160371.1 7900 8.74% 664
NW_021160372.1 21590 16.06% 1798
NW_021160373.1 13420 23.08% 1114
NW_021160374.1 23850 19.18% 1998
NW_021160375.1 38150 20.75% 3141
NW_021160376.1 199180 23.08% 16377
NW_021160381.1 860 1.77% 72
NW_021160383.1 29747 43.11% 2523
NW_021160384.1 2320 2.91% 210
NW_021160401.1 1320 8.11% 120
NW_021160410.1 7900 48.01% 698
NW_021160417.1 3920 6.92% 301
NW_021160452.1 2690 15.89% 231
NW_021160482.1 410 2.37% 35
NW_021160484.1 3320 19.08% 286
NW_021160495.1 102440 12.43% 8697
NW_021160514.1 2210 12.27% 192
NW_021160523.1 800 4.43% 65
NW_021160525.1 3910 21.55% 310
NW_021160535.1 4030 21.99% 353
NW_021160549.1 2470 13.30% 212
NW_021160573.1 7120 37.40% 605
NW_021160589.1 180 0.94% 17
NW_021160606.1 62490 6.21% 5298
NW_021160623.1 1660 8.39% 146
NW_021160625.1 200 1.01% 20
NW_021160629.1 200 1.00% 19
NW_021160635.1 630 3.14% 55
NW_021160655.1 5020 24.40% 416
NW_021160656.1 2090 10.21% 176
NW_021160678.1 440 2.12% 42
NW_021160682.1 11545 55.71% 974
NW_021160688.1 4390 21.50% 365
NW_021160701.1 8770 41.34% 799
NW_021160725.1 760 3.51% 66
NW_021160726.1 14620 67.22% 1383
NW_021160734.1 900 4.13% 75
NW_021160737.1 20 0.09% 2
NW_021160757.1 130 0.59% 11
NW_021160770.1 14500 64.07% 1360
NW_021160772.1 1880 8.29% 165
NW_021160805.1 7120 30.37% 596
NW_021160821.1 790 3.30% 72
NW_021160827.1 65540 8.93% 5661
NW_021160832.1 990 4.11% 81
NW_021160834.1 2340 9.70% 202
NW_021160835.1 20 0.12% 2
NW_021160848.1 330 1.36% 25
NW_021160868.1 90 0.37% 9
NW_021160890.1 4120 16.32% 348
NW_021160903.1 6616 24.98% 563
NW_021160919.1 1300 4.99% 106
NW_021160925.1 780 2.99% 71
NW_021160946.1 2390 9.03% 204
NW_021160955.1 3730 14.05% 312
NW_021160961.1 2920 10.91% 253
NW_021160976.1 9570 35.16% 800
NW_021160983.1 280 1.03% 24
NW_021160986.1 40 0.15% 4
NW_021161026.1 150 0.54% 13
NW_021161033.1 120 0.42% 11
NW_021161038.1 1420 5.25% 117
NW_021161041.1 1440 5.05% 119
NW_021161043.1 850 2.91% 77
NW_021161046.1 5150 17.45% 451
NW_021161062.1 800 2.70% 65
NW_021161066.1 9620 32.24% 785
NW_021161106.1 5260 17.16% 447
NW_021161107.1 1980 6.44% 170
NW_021161113.1 8120 24.08% 676
NW_021161114.1 8020 26.00% 719
NW_021161131.1 230 0.74% 23
NW_021161133.1 8460 5.69% 718
NW_021161138.1 530 1.70% 45
NW_021161152.1 3430 10.90% 290
NW_021161164.1 4670 14.45% 409
NW_021161166.1 6860 21.11% 564
NW_021161184.1 1390 4.70% 119
NW_021161201.1 2850 8.58% 240
NW_021161211.1 3920 11.75% 345
NW_021161213.1 520 1.56% 44
NW_021161224.1 6020 17.86% 520
NW_021161226.1 6010 18.03% 507
NW_021161241.1 1050 3.06% 91
NW_021161247.1 20 0.06% 2
NW_021161253.1 230 0.66% 21
NW_021161261.1 2280 6.52% 193
NW_021161269.1 9960 28.38% 822
NW_021161274.1 70 0.20% 6
NW_021161282.1 17830 45.86% 1523
NW_021161303.1 1620 4.50% 145
NW_021161305.1 1210 3.35% 110
NW_021161307.1 1550 5.84% 132
NW_021161312.1 460 1.29% 39
NW_021161320.1 13940 14.19% 1181
NW_021161336.1 5400 14.65% 457
NW_021161338.1 1870 5.03% 164
NW_021161340.1 2490 6.77% 217
NW_021161348.1 5670 15.14% 478
NW_021161355.1 8540 22.10% 740
NW_021161360.1 820 2.19% 75
NW_021161364.1 3920 10.27% 337
NW_021161377.1 14990 37.70% 1275
NW_021161379.1 470 1.23% 44
NW_021161380.1 140 0.44% 14
NW_021161385.1 1030 2.65% 83
NW_021161392.1 9240 23.62% 808
NW_021161394.1 3820 9.84% 319
NW_021161396.1 480 1.23% 39
NW_021161399.1 2520 11.49% 216
NW_021161404.1 2380 6.04% 209
NW_021161413.1 4800 12.12% 390
NW_021161421.1 1180 2.97% 109
NW_021161422.1 580 1.47% 47
NW_021161427.1 2830 7.06% 248
NW_021161433.1 390 0.96% 36
NW_021161437.1 1470 4.89% 126
NW_021161446.1 1900 4.64% 172
NW_021161463.1 80 0.19% 8
NW_021161468.1 2670 6.36% 235
NW_021161470.1 550 1.31% 48
NW_021161483.1 60 0.14% 6
NW_021161486.1 6790 15.95% 551
NW_021161494.1 1800 4.20% 159
NW_021161497.1 830 1.93% 74
NW_021161505.1 6380 14.80% 538
NW_021161507.1 9770 22.57% 819
NW_021161508.1 14830 34.37% 1230
NW_021161519.1 8600 19.61% 702
NW_021161520.1 3390 7.87% 304
NW_021161523.1 3750 8.67% 303
NW_021161525.1 9940 22.58% 817
NW_021161526.1 10910 24.77% 943
NW_021161532.1 970 2.18% 89
NW_021161535.1 1160 2.60% 101
NW_021161537.1 14390 32.44% 1253
NW_021161545.1 16209 36.28% 1441
NW_021161552.1 1640 3.86% 141
NW_021161554.1 5560 12.31% 468
NW_021161561.1 10370 22.95% 886
NW_021161562.1 10470 23.03% 885
NW_021161567.1 2770 6.08% 243
NW_021161570.1 150 0.33% 15
NW_021161582.1 15280 33.26% 1285
NW_021161585.1 12570 27.28% 1066
NW_021161590.1 22280 48.43% 1875
NW_021161593.1 18580 39.93% 1560
NW_021161596.1 73750 13.68% 6241
NW_021161601.1 7620 16.20% 630
NW_021161608.1 2320 4.97% 190
NW_021161609.1 1120 2.38% 98
NW_021161614.1 2820 5.91% 244
NW_021161616.1 6650 13.90% 582
NW_021161617.1 600 1.25% 59
NW_021161627.1 5230 15.64% 448
NW_021161633.1 21760 44.04% 1834
NW_021161642.1 5030 10.11% 424
NW_021161648.1 21940 43.12% 1931
NW_021161679.1 6650 12.76% 558
NW_021161680.1 3510 6.78% 285
NW_021161686.1 23730 17.54% 1990
NW_021161694.1 2650 5.82% 236
NW_021161695.1 5180 9.69% 441
NW_021161696.1 3540 6.67% 307
NW_021161699.1 11804 24.41% 989
NW_021161700.1 790 1.49% 72
NW_021161713.1 1080 2.00% 96
NW_021161715.1 1010 1.86% 87
NW_021161718.1 16400 30.10% 1387
NW_021161725.1 10050 31.94% 824
NW_021161737.1 4030 7.22% 350
NW_021161743.1 3160 5.64% 275
NW_021161747.1 510 0.90% 46
NW_021161754.1 16140 28.22% 1371
NW_021161759.1 1270 2.21% 115
NW_021161767.1 15510 15.19% 1295
NW_021161769.1 4710 8.12% 404
NW_021161772.1 5350 7.24% 473
NW_021161784.1 1390 27.00% 115
NW_021161790.1 17090 28.32% 1454
NW_021161794.1 1200 1.99% 101
NW_021161796.1 3540 5.86% 294
NW_021161798.1 4180 8.88% 355
NW_021161830.1 10850 24.25% 890
NW_021161832.1 3880 6.12% 329
NW_021161839.1 3350 5.23% 294
NW_021161842.1 11700 17.94% 953
NW_021161843.1 5930 9.10% 514
NW_021161845.1 20640 31.56% 1747
NW_021161850.1 362301 32.43% 29967
NW_021161853.1 12710 19.26% 1075
NW_021161857.1 12140 18.30% 1003
NW_021161862.1 3860 5.83% 324
NW_021161876.1 15750 23.07% 1287
NW_021161878.1 12310 18.10% 1029
NW_021161881.1 11930 19.81% 1031
NW_021161888.1 16570 23.87% 1411
NW_021161902.1 15190 23.44% 1268
NW_021161927.1 10070 13.46% 838
NW_021161934.1 11700 15.54% 965
NW_021161939.1 20350 26.87% 1730
NW_021161954.1 11260 14.60% 932
NW_021161955.1 6740 8.70% 529
NW_021161956.1 16590 21.72% 1423
NW_021161958.1 25400 32.34% 2072
NW_021161961.1 16070 20.55% 1340
NW_021161962.1 3210 4.02% 272
NW_021161965.1 10250 12.97% 866
NW_021161996.1 8670 10.09% 749
NW_021162004.1 1600 5.63% 141
NW_021162007.1 8210 9.34% 691
NW_021162009.1 37220 42.70% 3131
NW_021162025.1 11870 13.31% 1002
NW_021162035.1 5080 5.45% 444
NW_021162047.1 8910 9.31% 766
NW_021162055.1 21800 21.91% 1844
NW_021162083.1 25110 14.57% 2131
NW_021162091.1 21640 19.08% 1893
NW_021162100.1 18860 15.00% 1710
NW_021162108.1 16630 52.18% 1410
NW_021162157.1 3620 6.01% 325
NW_021162185.1 20 0.23% 2
NW_021162208.1 1480 0.59% 142
NW_021162222.1 5880 15.53% 502
NW_021162226.1 1680 3.85% 148
NW_021162246.1 52330 49.54% 4319
NW_021162251.1 32030 44.85% 2650
NW_021162253.1 400 1.28% 37
NW_021162263.1 860 3.25% 71
NW_021162265.1 16070 41.58% 1377
NW_021162274.1 41180 40.55% 3470
NW_021162277.1 4130 16.60% 337
NW_021162460.1 60 0.80% 5
NW_021162463.1 780 10.33% 70
NW_021162495.1 510 7.74% 40
NW_021162553.1 670 7.73% 58
NW_021162593.1 400 4.30% 39
NW_021162599.1 4780 50.99% 414
NW_021162621.1 1120 11.46% 90
NW_021162643.1 12945 50.93% 1114
NW_021162814.1 630 5.08% 56
NW_021162871.1 1980 14.26% 170
NW_021162949.1 40 0.27% 4
NW_021163002.1 130 0.82% 13
2533 contigs with no values (90119066 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 132433283 1 160 11.94 10
global segment-length histogram

Files

Filename Size md5
SN_SOX6_Dopa.bw 787.83 MB a19891cbb5d9daaf586010a10923037d
genomic_resource.yaml 1.11 KB a1889e34d9ab2acfc69ad24739da8ede
statistics/