Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STH_PVALB-PITX2_Glut/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STH_PVALB-PITX2_Glut cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STH_PVALB-PITX2_Glut
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STH_PVALB-PITX2_Glut float

johansen2025Crossspecies_atac_macaque_STH_PVALB-PITX2_Glut

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STH_PVALB-PITX2_Glut [0.0323, 150]
n
1,798,193,678
mean
0.139
sd
0.285

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 179819367860.52% 153543644
NC_005943.1 1980 11.95% 190
NC_027914.1 1585480 13.49% 135092
NC_041754.1 149974760 67.07% 12891457
NC_041755.1 124214830 63.31% 10584728
NC_041756.1 119112160 64.28% 10174486
NC_041757.1 104497370 61.48% 8859235
NC_041758.1 108460520 57.90% 9136158
NC_041759.1 109705400 61.26% 9305215
NC_041760.1 111799480 65.82% 9581869
NC_041761.1 89812110 61.65% 7629080
NC_041762.1 87370030 65.14% 7490415
NC_041763.1 68955790 69.29% 5974777
NC_041764.1 85456110 64.22% 7304336
NC_041765.1 81746326 62.86% 6947428
NC_041766.1 70196800 64.56% 5996657
NC_041767.1 84624000 66.08% 7279258
NC_041768.1 72828320 64.29% 6245869
NC_041769.1 56723220 71.24% 4948673
NC_041770.1 56135470 58.82% 4748507
NC_041771.1 46507720 62.45% 3953846
NC_041772.1 38362580 65.78% 3352043
NC_041773.1 54362835 70.48% 4725048
NC_041774.1 70754910 46.13% 5853602
NW_021160097.1 500 1.35% 44
NW_021160098.1 4200 10.50% 355
NW_021160099.1 2540 6.28% 225
NW_021160102.1 7840 15.62% 663
NW_021160105.1 4580 8.35% 397
NW_021160106.1 9620 17.32% 804
NW_021160107.1 3900 7.02% 325
NW_021160109.1 11280 13.71% 962
NW_021160110.1 25620 21.69% 2153
NW_021160111.1 43980 33.06% 3646
NW_021160113.1 63280 54.40% 5617
NW_021160114.1 17610 26.72% 1461
NW_021160116.1 2420 6.84% 210
NW_021160121.1 4910 5.70% 415
NW_021160122.1 13320 14.47% 1125
NW_021160123.1 7270 13.73% 620
NW_021160125.1 530 2.09% 49
NW_021160136.1 7620 12.76% 636
NW_021160140.1 14890 11.43% 1264
NW_021160141.1 19180 14.30% 1634
NW_021160142.1 25740 53.83% 2226
NW_021160144.1 311589 25.33% 26553
NW_021160145.1 3800 14.14% 324
NW_021160147.1 4430 14.75% 387
NW_021160148.1 7650 22.29% 648
NW_021160150.1 3240 8.64% 297
NW_021160155.1 5280 9.68% 468
NW_021160158.1 6250 8.29% 538
NW_021160159.1 18170 21.18% 1512
NW_021160161.1 192222 26.03% 16206
NW_021160167.1 1100 2.91% 94
NW_021160168.1 1230 2.95% 107
NW_021160175.1 86060 46.48% 7124
NW_021160179.1 3220 8.28% 284
NW_021160182.1 12150 20.92% 1035
NW_021160184.1 6320 10.31% 544
NW_021160185.1 3040 4.89% 270
NW_021160186.1 16290 25.26% 1338
NW_021160187.1 5270 6.90% 441
NW_021160188.1 13030 15.71% 1071
NW_021160189.1 14330 14.14% 1207
NW_021160190.1 9830 27.51% 853
NW_021160191.1 2820 10.12% 241
NW_021160193.1 1230 3.95% 101
NW_021160196.1 14215 30.83% 1206
NW_021160197.1 8160 15.75% 683
NW_021160199.1 5730 10.25% 476
NW_021160200.1 2740 4.64% 237
NW_021160201.1 17400 28.32% 1464
NW_021160202.1 3680 5.62% 310
NW_021160203.1 12900 17.87% 1091
NW_021160204.1 12200 16.75% 1023
NW_021160205.1 7230 9.87% 596
NW_021160206.1 9170 10.95% 765
NW_021160207.1 9160 9.27% 767
NW_021160209.1 59770 8.92% 5072
NW_021160211.1 19580 14.69% 1701
NW_021160220.1 13590 20.37% 1172
NW_021160221.1 10460 14.76% 890
NW_021160222.1 6310 8.26% 539
NW_021160223.1 21700 26.05% 1861
NW_021160225.1 12150 22.57% 1033
NW_021160226.1 4250 11.80% 361
NW_021160228.1 5090 10.64% 431
NW_021160229.1 10830 22.57% 896
NW_021160231.1 8590 15.76% 711
NW_021160233.1 6720 10.40% 595
NW_021160234.1 21470 32.76% 1894
NW_021160236.1 9150 11.76% 779
NW_021160237.1 28860 33.67% 2475
NW_021160238.1 21530 20.61% 1795
NW_021160239.1 3570 12.24% 305
NW_021160242.1 3070 10.39% 259
NW_021160243.1 1520 4.82% 134
NW_021160244.1 22360 63.49% 2089
NW_021160245.1 2840 6.49% 243
NW_021160248.1 4520 6.05% 394
NW_021160249.1 10220 13.50% 845
NW_021160250.1 6020 9.36% 525
NW_021160251.1 16490 19.53% 1376
NW_021160252.1 17380 19.61% 1433
NW_021160255.1 4070 14.50% 356
NW_021160263.1 3850 7.32% 323
NW_021160266.1 4610 6.14% 402
NW_021160268.1 6720 9.92% 580
NW_021160270.1 6600 18.95% 580
NW_021160271.1 2620 7.54% 230
NW_021160272.1 5720 16.35% 505
NW_021160273.1 4020 10.00% 337
NW_021160277.1 2400 5.35% 207
NW_021160278.1 11160 20.06% 920
NW_021160279.1 11810 17.90% 997
NW_021160282.1 19950 16.13% 1708
NW_021160284.1 1970 5.66% 166
NW_021160285.1 4980 11.16% 417
NW_021160291.1 1780 3.93% 151
NW_021160293.1 10290 19.48% 866
NW_021160294.1 15510 19.48% 1299
NW_021160295.1 8570 10.38% 724
NW_021160297.1 8620 15.33% 724
NW_021160298.1 5600 20.55% 460
NW_021160300.1 11790 18.93% 980
NW_021160305.1 3200 7.94% 264
NW_021160306.1 3240 8.21% 267
NW_021160307.1 7970 15.13% 674
NW_021160308.1 3340 6.19% 299
NW_021160310.1 29410 50.48% 2633
NW_021160311.1 21880 27.78% 1828
NW_021160312.1 17680 20.00% 1521
NW_021160313.1 17860 18.87% 1485
NW_021160319.1 8530 19.64% 718
NW_021160320.1 8100 15.41% 691
NW_021160324.1 14740 23.17% 1202
NW_021160325.1 12690 19.48% 1057
NW_021160326.1 5130 7.88% 438
NW_021160327.1 11329 17.17% 981
NW_021160328.1 16150 25.50% 1432
NW_021160329.1 12570 23.41% 1075
NW_021160338.1 3360 8.95% 284
NW_021160339.1 2000 5.19% 179
NW_021160341.1 10260 22.16% 875
NW_021160347.1 25050 15.16% 2134
NW_021160353.1 8350 20.28% 685
NW_021160354.1 3380 8.05% 285
NW_021160355.1 7080 12.74% 592
NW_021160356.1 7440 9.75% 616
NW_021160357.1 2360 7.75% 189
NW_021160358.1 7820 19.82% 670
NW_021160359.1 8170 19.90% 689
NW_021160361.1 3380 7.18% 287
NW_021160362.1 3880 7.23% 327
NW_021160363.1 10650 17.48% 863
NW_021160364.1 10970 17.75% 934
NW_021160365.1 12800 19.27% 1065
NW_021160366.1 13560 19.03% 1130
NW_021160367.1 21250 27.82% 1786
NW_021160368.1 5170 6.55% 411
NW_021160369.1 10460 12.79% 900
NW_021160370.1 17300 19.33% 1450
NW_021160371.1 8950 9.90% 758
NW_021160372.1 35900 26.70% 3004
NW_021160373.1 15790 27.15% 1340
NW_021160374.1 23710 19.07% 2009
NW_021160375.1 49540 26.95% 4147
NW_021160376.1 180820 20.96% 14971
NW_021160381.1 1030 2.12% 88
NW_021160383.1 31497 45.65% 2716
NW_021160384.1 5450 6.84% 474
NW_021160401.1 2790 17.14% 236
NW_021160410.1 7990 48.56% 722
NW_021160417.1 4240 7.49% 347
NW_021160452.1 3180 18.78% 260
NW_021160482.1 910 5.27% 80
NW_021160484.1 4760 27.36% 384
NW_021160495.1 245080 29.75% 20709
NW_021160514.1 2400 13.32% 206
NW_021160523.1 880 4.87% 75
NW_021160525.1 2740 15.10% 231
NW_021160535.1 5760 31.43% 488
NW_021160549.1 2650 14.27% 229
NW_021160573.1 7570 39.77% 665
NW_021160589.1 280 1.46% 27
NW_021160606.1 102120 10.15% 8614
NW_021160623.1 970 4.90% 79
NW_021160625.1 140 0.71% 14
NW_021160629.1 230 1.16% 22
NW_021160635.1 1020 5.08% 82
NW_021160655.1 4830 23.48% 410
NW_021160656.1 2170 10.61% 179
NW_021160678.1 600 2.89% 54
NW_021160682.1 13805 66.61% 1220
NW_021160688.1 5130 25.12% 436
NW_021160701.1 9540 44.97% 866
NW_021160725.1 1220 5.64% 106
NW_021160726.1 15108 69.47% 1451
NW_021160734.1 1210 5.56% 98
NW_021160757.1 150 0.68% 15
NW_021160770.1 15280 67.52% 1445
NW_021160772.1 2650 11.69% 229
NW_021160805.1 8340 35.57% 724
NW_021160821.1 1330 5.56% 115
NW_021160827.1 78280 10.67% 6863
NW_021160832.1 1740 7.23% 151
NW_021160834.1 3070 12.73% 261
NW_021160835.1 100 0.59% 10
NW_021160848.1 590 2.43% 50
NW_021160868.1 60 0.25% 6
NW_021160890.1 3860 15.29% 329
NW_021160903.1 6680 25.22% 572
NW_021160919.1 1510 5.79% 127
NW_021160925.1 790 3.03% 74
NW_021160946.1 3680 13.90% 311
NW_021160955.1 3440 12.96% 282
NW_021160961.1 5750 21.49% 483
NW_021160976.1 9000 33.07% 745
NW_021160983.1 280 1.03% 20
NW_021160986.1 110 0.40% 11
NW_021161026.1 140 0.50% 14
NW_021161033.1 140 0.49% 12
NW_021161038.1 1410 5.21% 125
NW_021161041.1 2910 10.21% 238
NW_021161043.1 780 2.67% 67
NW_021161046.1 5310 18.00% 483
NW_021161062.1 780 2.63% 62
NW_021161066.1 10990 36.83% 915
NW_021161106.1 10540 34.39% 914
NW_021161107.1 2660 8.65% 229
NW_021161113.1 8710 25.83% 734
NW_021161114.1 7980 25.87% 734
NW_021161131.1 200 0.64% 20
NW_021161133.1 14800 9.96% 1227
NW_021161138.1 1130 3.62% 91
NW_021161152.1 4830 15.35% 402
NW_021161164.1 5050 15.62% 444
NW_021161166.1 10030 30.86% 813
NW_021161184.1 1970 6.67% 166
NW_021161201.1 2880 8.67% 247
NW_021161211.1 4170 12.50% 350
NW_021161213.1 830 2.49% 75
NW_021161224.1 6850 20.32% 593
NW_021161226.1 6850 20.55% 609
NW_021161241.1 1350 3.94% 116
NW_021161247.1 20 0.06% 2
NW_021161253.1 210 0.61% 18
NW_021161261.1 2550 7.30% 223
NW_021161269.1 12920 36.81% 1081
NW_021161274.1 140 0.40% 13
NW_021161282.1 18910 48.64% 1645
NW_021161303.1 3820 10.61% 307
NW_021161305.1 1220 3.38% 99
NW_021161307.1 1850 6.97% 159
NW_021161312.1 550 1.54% 49
NW_021161320.1 15300 15.58% 1306
NW_021161336.1 3840 10.42% 326
NW_021161338.1 3130 8.42% 265
NW_021161340.1 2610 7.10% 227
NW_021161348.1 6840 18.27% 576
NW_021161355.1 11500 29.76% 970
NW_021161360.1 1200 3.20% 103
NW_021161364.1 3810 9.98% 337
NW_021161377.1 16750 42.13% 1424
NW_021161379.1 600 1.57% 51
NW_021161380.1 560 1.76% 53
NW_021161385.1 1400 3.60% 119
NW_021161392.1 10330 26.41% 889
NW_021161394.1 4670 12.03% 396
NW_021161396.1 520 1.33% 47
NW_021161399.1 3420 15.60% 287
NW_021161404.1 1690 4.29% 151
NW_021161413.1 5310 13.41% 439
NW_021161421.1 1380 3.47% 122
NW_021161422.1 760 1.92% 61
NW_021161427.1 3470 8.65% 285
NW_021161433.1 550 1.36% 52
NW_021161437.1 1270 4.23% 112
NW_021161446.1 1770 4.33% 154
NW_021161463.1 180 0.43% 18
NW_021161468.1 3730 8.89% 317
NW_021161470.1 810 1.93% 72
NW_021161483.1 60 0.14% 6
NW_021161486.1 9150 21.50% 784
NW_021161494.1 2220 5.18% 192
NW_021161497.1 1620 3.77% 128
NW_021161505.1 7460 17.31% 644
NW_021161507.1 10650 24.60% 878
NW_021161508.1 12954 30.02% 1107
NW_021161519.1 13689 31.21% 1152
NW_021161520.1 3760 8.72% 348
NW_021161523.1 3540 8.18% 298
NW_021161525.1 8990 20.42% 741
NW_021161526.1 8010 18.18% 692
NW_021161532.1 2800 6.30% 239
NW_021161535.1 1800 4.03% 154
NW_021161537.1 15645 35.27% 1381
NW_021161545.1 17000 38.05% 1546
NW_021161552.1 2840 6.68% 245
NW_021161554.1 8410 18.63% 708
NW_021161561.1 11470 25.38% 969
NW_021161562.1 13930 30.64% 1198
NW_021161567.1 4990 10.96% 421
NW_021161570.1 160 0.35% 16
NW_021161582.1 13840 30.13% 1197
NW_021161585.1 13020 28.25% 1115
NW_021161590.1 26080 56.68% 2354
NW_021161593.1 22504 48.36% 1931
NW_021161596.1 93150 17.28% 8064
NW_021161601.1 9100 19.35% 762
NW_021161608.1 3690 7.90% 325
NW_021161609.1 1120 2.38% 96
NW_021161614.1 3920 8.22% 337
NW_021161616.1 7820 16.34% 651
NW_021161617.1 1500 3.12% 128
NW_021161627.1 7530 22.52% 631
NW_021161633.1 25020 50.63% 2136
NW_021161642.1 8250 16.58% 666
NW_021161648.1 24000 47.17% 2148
NW_021161679.1 6860 13.16% 576
NW_021161680.1 6050 11.69% 521
NW_021161686.1 32830 24.27% 2861
NW_021161694.1 3840 8.44% 322
NW_021161695.1 6460 12.09% 518
NW_021161696.1 6190 11.67% 526
NW_021161699.1 15624 32.31% 1321
NW_021161700.1 1180 2.22% 104
NW_021161713.1 2140 3.97% 186
NW_021161715.1 1600 2.94% 141
NW_021161718.1 13350 24.50% 1115
NW_021161725.1 7320 23.26% 602
NW_021161737.1 6680 11.96% 567
NW_021161743.1 3920 7.00% 344
NW_021161747.1 600 1.06% 51
NW_021161754.1 21290 37.23% 1801
NW_021161759.1 2880 5.01% 246
NW_021161767.1 12690 12.43% 1065
NW_021161769.1 7040 12.14% 606
NW_021161772.1 6200 8.39% 534
NW_021161784.1 1740 33.80% 154
NW_021161790.1 15740 26.08% 1367
NW_021161794.1 1870 3.09% 165
NW_021161796.1 4420 7.32% 371
NW_021161798.1 7290 15.49% 627
NW_021161830.1 9690 21.65% 812
NW_021161832.1 5430 8.56% 464
NW_021161839.1 5520 8.62% 467
NW_021161842.1 5670 8.69% 483
NW_021161843.1 7160 10.99% 611
NW_021161845.1 25760 39.39% 2217
NW_021161850.1 451411 40.40% 38062
NW_021161853.1 13020 19.73% 1120
NW_021161857.1 11390 17.17% 934
NW_021161862.1 3650 5.52% 311
NW_021161876.1 16710 24.47% 1356
NW_021161878.1 13920 20.47% 1178
NW_021161881.1 12700 21.09% 1083
NW_021161888.1 16740 24.11% 1391
NW_021161902.1 12690 19.58% 1114
NW_021161927.1 11540 15.43% 976
NW_021161934.1 9930 13.18% 853
NW_021161939.1 21040 27.78% 1804
NW_021161954.1 12380 16.05% 1067
NW_021161955.1 10020 12.93% 832
NW_021161956.1 13790 18.06% 1200
NW_021161958.1 29020 36.95% 2386
NW_021161961.1 18210 23.29% 1508
NW_021161962.1 4640 5.81% 394
NW_021161965.1 11890 15.04% 1009
NW_021161996.1 7140 8.31% 626
NW_021162004.1 2060 7.25% 171
NW_021162007.1 9380 10.67% 772
NW_021162009.1 39490 45.30% 3463
NW_021162025.1 12610 14.14% 1095
NW_021162035.1 5530 5.93% 480
NW_021162047.1 9170 9.58% 801
NW_021162055.1 29210 29.36% 2457
NW_021162083.1 25860 15.01% 2152
NW_021162091.1 24230 21.37% 2160
NW_021162100.1 21860 17.39% 1965
NW_021162108.1 18720 58.73% 1634
NW_021162157.1 4800 7.97% 413
NW_021162185.1 20 0.23% 2
NW_021162208.1 1720 0.69% 154
NW_021162222.1 9450 24.96% 791
NW_021162226.1 3900 8.93% 330
NW_021162246.1 55820 52.84% 4609
NW_021162251.1 36180 50.66% 3013
NW_021162253.1 720 2.30% 64
NW_021162263.1 890 3.36% 73
NW_021162265.1 13860 35.86% 1161
NW_021162274.1 48180 47.45% 4136
NW_021162277.1 4740 19.06% 414
NW_021162460.1 20 0.27% 2
NW_021162463.1 840 11.13% 70
NW_021162495.1 840 12.75% 73
NW_021162553.1 650 7.50% 55
NW_021162593.1 330 3.55% 29
NW_021162599.1 5400 57.60% 471
NW_021162621.1 920 9.42% 84
NW_021162643.1 14375 56.56% 1240
NW_021162814.1 860 6.94% 74
NW_021162871.1 1290 9.29% 103
NW_021162949.1 60 0.40% 6
NW_021163002.1 200 1.26% 18
2534 contigs with no values (90140842 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 153543644 1 130 11.71 10
global segment-length histogram

Files

Filename Size md5
STH_PVALB-PITX2_Glut.bw 889.21 MB 85afcc6efbacb977f9916a7b854a7d65
genomic_resource.yaml 1.14 KB 21cd9f3d2bf37e3ed28ac0ad535a5630
statistics/