Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STR-BF_TAC3-PLPP4-LHX8_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR-BF_TAC3-PLPP4-LHX8_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR-BF_TAC3-PLPP4-LHX8_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STR-BF_TAC3-PLPP4-LHX8_GABA float

johansen2025Crossspecies_atac_macaque_STR-BF_TAC3-PLPP4-LHX8_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STR-BF_TAC3-PLPP4-LHX8_GABA [0.179, 90.3]
n
648,644,016
mean
0.32
sd
0.444

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 64864401621.83% 53923319
NC_005943.1 1510 9.12% 141
NC_027914.1 599780 5.10% 54258
NC_041754.1 57965510 25.92% 4784505
NC_041755.1 42656400 21.74% 3558466
NC_041756.1 42559320 22.97% 3537058
NC_041757.1 35045590 20.62% 2935238
NC_041758.1 32252650 17.22% 2734094
NC_041759.1 36338920 20.29% 3046074
NC_041760.1 43262580 25.47% 3574547
NC_041761.1 30375720 20.85% 2541002
NC_041762.1 32056250 23.90% 2655761
NC_041763.1 31728470 31.88% 2588130
NC_041764.1 30801600 23.15% 2559110
NC_041765.1 27690360 21.29% 2313876
NC_041766.1 25709420 23.64% 2131348
NC_041767.1 33389830 26.07% 2756480
NC_041768.1 27140410 23.96% 2250745
NC_041769.1 26523670 33.31% 2166345
NC_041770.1 17689780 18.54% 1485882
NC_041771.1 15826380 21.25% 1321055
NC_041772.1 18510890 31.74% 1515082
NC_041773.1 22714020 29.45% 1864572
NC_041774.1 16518380 10.77% 1438046
NW_021160097.1 140 0.38% 13
NW_021160098.1 980 2.45% 91
NW_021160099.1 340 0.84% 33
NW_021160102.1 1400 2.79% 130
NW_021160105.1 1020 1.86% 92
NW_021160106.1 2140 3.85% 190
NW_021160107.1 810 1.46% 75
NW_021160109.1 3510 4.26% 316
NW_021160110.1 9110 7.71% 798
NW_021160111.1 5800 4.36% 535
NW_021160113.1 34020 29.24% 2847
NW_021160114.1 5400 8.19% 462
NW_021160116.1 280 0.79% 27
NW_021160121.1 1110 1.29% 109
NW_021160122.1 3200 3.48% 297
NW_021160123.1 2270 4.29% 199
NW_021160125.1 60 0.24% 6
NW_021160136.1 2200 3.68% 188
NW_021160140.1 4880 3.75% 438
NW_021160141.1 3600 2.68% 332
NW_021160142.1 8870 18.55% 724
NW_021160144.1 38370 3.12% 3663
NW_021160145.1 790 2.94% 71
NW_021160147.1 710 2.36% 69
NW_021160148.1 3600 10.49% 282
NW_021160150.1 1860 4.96% 167
NW_021160155.1 2070 3.80% 184
NW_021160158.1 2220 2.95% 195
NW_021160159.1 3000 3.50% 275
NW_021160161.1 36260 4.91% 3152
NW_021160167.1 480 1.27% 46
NW_021160168.1 180 0.43% 17
NW_021160175.1 36640 19.79% 3050
NW_021160179.1 400 1.03% 38
NW_021160182.1 5290 9.11% 447
NW_021160184.1 990 1.62% 86
NW_021160185.1 940 1.51% 85
NW_021160186.1 4860 7.54% 425
NW_021160187.1 980 1.28% 88
NW_021160188.1 2540 3.06% 216
NW_021160189.1 2160 2.13% 189
NW_021160190.1 2170 6.07% 180
NW_021160191.1 1150 4.13% 95
NW_021160193.1 150 0.48% 15
NW_021160196.1 6430 13.95% 532
NW_021160197.1 2080 4.01% 185
NW_021160199.1 1310 2.34% 121
NW_021160200.1 2110 3.58% 188
NW_021160201.1 6270 10.20% 532
NW_021160202.1 1280 1.95% 109
NW_021160203.1 3590 4.97% 320
NW_021160204.1 3680 5.05% 315
NW_021160205.1 1430 1.95% 133
NW_021160206.1 2900 3.46% 262
NW_021160207.1 3170 3.21% 291
NW_021160209.1 11810 1.76% 1013
NW_021160211.1 3340 2.51% 299
NW_021160220.1 6290 9.43% 511
NW_021160221.1 1510 2.13% 141
NW_021160222.1 750 0.98% 71
NW_021160223.1 10240 12.29% 845
NW_021160225.1 3600 6.69% 309
NW_021160226.1 1620 4.50% 146
NW_021160228.1 1530 3.20% 138
NW_021160229.1 870 1.81% 85
NW_021160231.1 840 1.54% 79
NW_021160233.1 2020 3.12% 160
NW_021160234.1 12480 19.04% 1038
NW_021160236.1 2580 3.32% 245
NW_021160237.1 9630 11.23% 831
NW_021160238.1 6830 6.54% 594
NW_021160239.1 470 1.61% 45
NW_021160242.1 1040 3.52% 89
NW_021160243.1 330 1.05% 32
NW_021160244.1 15770 44.78% 1314
NW_021160245.1 1410 3.22% 119
NW_021160248.1 820 1.10% 77
NW_021160249.1 3950 5.22% 328
NW_021160250.1 1140 1.77% 96
NW_021160251.1 4980 5.90% 421
NW_021160252.1 6330 7.14% 535
NW_021160255.1 1610 5.73% 140
NW_021160263.1 390 0.74% 38
NW_021160266.1 1150 1.53% 110
NW_021160268.1 1490 2.20% 139
NW_021160270.1 1920 5.51% 161
NW_021160271.1 1120 3.22% 97
NW_021160272.1 2480 7.09% 211
NW_021160273.1 560 1.39% 53
NW_021160277.1 350 0.78% 33
NW_021160278.1 1700 3.06% 155
NW_021160279.1 3080 4.67% 283
NW_021160282.1 7540 6.09% 640
NW_021160284.1 650 1.87% 58
NW_021160285.1 1680 3.77% 151
NW_021160291.1 180 0.40% 17
NW_021160293.1 3770 7.14% 327
NW_021160294.1 5350 6.72% 463
NW_021160295.1 1700 2.06% 153
NW_021160297.1 2560 4.55% 217
NW_021160298.1 1770 6.50% 153
NW_021160300.1 5440 8.74% 454
NW_021160305.1 280 0.69% 27
NW_021160306.1 1360 3.45% 116
NW_021160307.1 2947 5.59% 262
NW_021160308.1 1360 2.52% 130
NW_021160310.1 12860 22.07% 1039
NW_021160311.1 7380 9.37% 641
NW_021160312.1 6220 7.03% 544
NW_021160313.1 5220 5.52% 449
NW_021160319.1 2830 6.52% 242
NW_021160320.1 2210 4.21% 196
NW_021160324.1 3190 5.01% 274
NW_021160325.1 3120 4.79% 273
NW_021160326.1 2450 3.76% 218
NW_021160327.1 3840 5.82% 328
NW_021160328.1 8540 13.49% 706
NW_021160329.1 3460 6.44% 284
NW_021160338.1 580 1.55% 55
NW_021160339.1 280 0.73% 28
NW_021160341.1 1930 4.17% 170
NW_021160347.1 6660 4.03% 595
NW_021160353.1 2210 5.37% 189
NW_021160354.1 750 1.79% 69
NW_021160355.1 1680 3.02% 157
NW_021160356.1 1580 2.07% 139
NW_021160357.1 300 0.99% 28
NW_021160358.1 2760 7.00% 235
NW_021160359.1 2890 7.04% 252
NW_021160361.1 480 1.02% 44
NW_021160362.1 860 1.60% 81
NW_021160363.1 3690 6.06% 322
NW_021160364.1 2870 4.64% 250
NW_021160365.1 3360 5.06% 302
NW_021160366.1 2980 4.18% 276
NW_021160367.1 8190 10.72% 690
NW_021160368.1 1020 1.29% 95
NW_021160369.1 660 0.81% 60
NW_021160370.1 4880 5.45% 412
NW_021160371.1 1440 1.59% 140
NW_021160372.1 9790 7.28% 854
NW_021160373.1 6120 10.52% 519
NW_021160374.1 3060 2.46% 281
NW_021160375.1 8910 4.85% 800
NW_021160376.1 34900 4.04% 3133
NW_021160381.1 450 0.92% 38
NW_021160383.1 5607 8.13% 490
NW_021160384.1 830 1.04% 80
NW_021160401.1 470 2.89% 45
NW_021160410.1 4420 26.86% 361
NW_021160417.1 610 1.08% 55
NW_021160452.1 620 3.66% 50
NW_021160482.1 220 1.27% 20
NW_021160484.1 680 3.91% 65
NW_021160495.1 31000 3.76% 2781
NW_021160514.1 1020 5.66% 88
NW_021160523.1 350 1.94% 27
NW_021160525.1 350 1.93% 34
NW_021160535.1 760 4.15% 66
NW_021160549.1 1450 7.81% 110
NW_021160573.1 2090 10.98% 177
NW_021160589.1 20 0.10% 2
NW_021160606.1 24280 2.41% 2196
NW_021160623.1 620 3.13% 52
NW_021160625.1 60 0.30% 6
NW_021160629.1 20 0.10% 2
NW_021160635.1 120 0.60% 12
NW_021160655.1 1300 6.32% 119
NW_021160656.1 690 3.37% 64
NW_021160678.1 90 0.43% 9
NW_021160682.1 6945 33.51% 538
NW_021160688.1 2520 12.34% 218
NW_021160701.1 3310 15.60% 286
NW_021160725.1 240 1.11% 24
NW_021160726.1 9900 45.52% 867
NW_021160734.1 110 0.51% 10
NW_021160757.1 20 0.09% 2
NW_021160770.1 9040 39.94% 780
NW_021160772.1 650 2.87% 59
NW_021160805.1 2410 10.28% 196
NW_021160821.1 40 0.17% 4
NW_021160827.1 23920 3.26% 1995
NW_021160832.1 180 0.75% 14
NW_021160834.1 280 1.16% 28
NW_021160868.1 20 0.08% 2
NW_021160890.1 650 2.57% 61
NW_021160903.1 1920 7.25% 164
NW_021160919.1 460 1.76% 41
NW_021160925.1 120 0.46% 11
NW_021160946.1 1310 4.95% 113
NW_021160955.1 630 2.37% 59
NW_021160961.1 440 1.64% 42
NW_021160976.1 2930 10.76% 254
NW_021160983.1 20 0.07% 2
NW_021160986.1 40 0.15% 4
NW_021161038.1 1400 5.17% 118
NW_021161041.1 340 1.19% 33
NW_021161043.1 200 0.69% 20
NW_021161046.1 2060 6.98% 170
NW_021161062.1 370 1.25% 36
NW_021161066.1 2520 8.45% 213
NW_021161106.1 1470 4.80% 127
NW_021161107.1 240 0.78% 22
NW_021161113.1 1830 5.43% 169
NW_021161114.1 2910 9.43% 258
NW_021161131.1 30 0.10% 3
NW_021161133.1 1160 0.78% 108
NW_021161138.1 60 0.19% 6
NW_021161152.1 1560 4.96% 132
NW_021161164.1 1170 3.62% 102
NW_021161166.1 1420 4.37% 129
NW_021161184.1 300 1.02% 26
NW_021161201.1 630 1.90% 58
NW_021161211.1 880 2.64% 84
NW_021161213.1 100 0.30% 10
NW_021161224.1 2910 8.63% 243
NW_021161226.1 1560 4.68% 122
NW_021161241.1 160 0.47% 16
NW_021161253.1 80 0.23% 7
NW_021161261.1 570 1.63% 55
NW_021161269.1 3000 8.55% 262
NW_021161282.1 8570 22.04% 709
NW_021161303.1 280 0.78% 27
NW_021161305.1 240 0.67% 23
NW_021161307.1 220 0.83% 20
NW_021161312.1 150 0.42% 13
NW_021161320.1 1780 1.81% 159
NW_021161336.1 1370 3.72% 115
NW_021161338.1 380 1.02% 37
NW_021161340.1 1250 3.40% 108
NW_021161348.1 1360 3.63% 119
NW_021161355.1 1780 4.61% 151
NW_021161360.1 180 0.48% 17
NW_021161364.1 940 2.46% 80
NW_021161377.1 5580 14.03% 483
NW_021161379.1 60 0.16% 5
NW_021161380.1 20 0.06% 2
NW_021161385.1 180 0.46% 18
NW_021161392.1 5100 13.04% 446
NW_021161394.1 1440 3.71% 117
NW_021161396.1 80 0.20% 8
NW_021161399.1 1410 6.43% 123
NW_021161404.1 360 0.91% 32
NW_021161413.1 990 2.50% 90
NW_021161421.1 140 0.35% 12
NW_021161422.1 220 0.56% 20
NW_021161427.1 1040 2.59% 90
NW_021161433.1 350 0.87% 34
NW_021161437.1 140 0.47% 14
NW_021161446.1 420 1.03% 42
NW_021161463.1 100 0.24% 8
NW_021161468.1 860 2.05% 81
NW_021161470.1 170 0.41% 17
NW_021161483.1 20 0.05% 2
NW_021161486.1 3770 8.86% 313
NW_021161494.1 530 1.24% 49
NW_021161497.1 280 0.65% 25
NW_021161505.1 2350 5.45% 198
NW_021161507.1 1220 2.82% 115
NW_021161508.1 5140 11.91% 427
NW_021161519.1 1700 3.88% 161
NW_021161520.1 2810 6.52% 256
NW_021161523.1 930 2.15% 81
NW_021161525.1 4380 9.95% 374
NW_021161526.1 2280 5.18% 192
NW_021161532.1 570 1.28% 49
NW_021161535.1 820 1.84% 76
NW_021161537.1 4720 10.64% 397
NW_021161545.1 5420 12.13% 436
NW_021161552.1 250 0.59% 23
NW_021161554.1 844 1.87% 81
NW_021161561.1 2380 5.27% 196
NW_021161562.1 3670 8.07% 313
NW_021161567.1 640 1.41% 62
NW_021161570.1 60 0.13% 5
NW_021161582.1 3360 7.31% 281
NW_021161585.1 5100 11.07% 445
NW_021161590.1 6470 14.06% 551
NW_021161593.1 5990 12.87% 488
NW_021161596.1 16950 3.14% 1479
NW_021161601.1 790 1.68% 75
NW_021161608.1 540 1.16% 47
NW_021161609.1 160 0.34% 15
NW_021161614.1 740 1.55% 69
NW_021161616.1 2710 5.66% 249
NW_021161617.1 140 0.29% 14
NW_021161627.1 2110 6.31% 181
NW_021161633.1 9520 19.27% 808
NW_021161642.1 790 1.59% 74
NW_021161648.1 11330 22.27% 931
NW_021161679.1 3180 6.10% 271
NW_021161680.1 1260 2.44% 105
NW_021161686.1 7100 5.25% 594
NW_021161694.1 440 0.97% 41
NW_021161695.1 720 1.35% 71
NW_021161696.1 600 1.13% 55
NW_021161699.1 2314 4.79% 205
NW_021161700.1 140 0.26% 13
NW_021161713.1 270 0.50% 26
NW_021161715.1 90 0.17% 7
NW_021161718.1 4690 8.61% 399
NW_021161725.1 900 2.86% 84
NW_021161737.1 1810 3.24% 168
NW_021161743.1 340 0.61% 29
NW_021161747.1 300 0.53% 29
NW_021161754.1 10010 17.50% 844
NW_021161759.1 200 0.35% 20
NW_021161767.1 2430 2.38% 221
NW_021161769.1 1780 3.07% 156
NW_021161772.1 1660 2.25% 142
NW_021161784.1 528 10.26% 49
NW_021161790.1 6760 11.20% 575
NW_021161794.1 780 1.29% 67
NW_021161796.1 680 1.13% 65
NW_021161798.1 1920 4.08% 167
NW_021161830.1 1430 3.20% 133
NW_021161832.1 590 0.93% 57
NW_021161839.1 620 0.97% 54
NW_021161842.1 830 1.27% 82
NW_021161843.1 770 1.18% 70
NW_021161845.1 7450 11.39% 626
NW_021161850.1 102031 9.13% 8879
NW_021161853.1 3410 5.17% 292
NW_021161857.1 2260 3.41% 206
NW_021161862.1 1230 1.86% 108
NW_021161876.1 3510 5.14% 314
NW_021161878.1 2090 3.07% 180
NW_021161881.1 4650 7.72% 396
NW_021161888.1 3930 5.66% 338
NW_021161902.1 4320 6.67% 376
NW_021161927.1 1740 2.33% 151
NW_021161934.1 2050 2.72% 189
NW_021161939.1 6960 9.19% 587
NW_021161954.1 2270 2.94% 193
NW_021161955.1 2580 3.33% 216
NW_021161956.1 5220 6.83% 458
NW_021161958.1 8050 10.25% 686
NW_021161961.1 3850 4.92% 356
NW_021161962.1 380 0.48% 33
NW_021161965.1 1920 2.43% 173
NW_021161996.1 1950 2.27% 176
NW_021162004.1 550 1.94% 50
NW_021162007.1 1570 1.79% 150
NW_021162009.1 17580 20.17% 1468
NW_021162025.1 1840 2.06% 169
NW_021162035.1 1180 1.26% 108
NW_021162047.1 1610 1.68% 150
NW_021162055.1 4610 4.63% 397
NW_021162083.1 3580 2.08% 336
NW_021162091.1 5510 4.86% 450
NW_021162100.1 7840 6.24% 644
NW_021162108.1 6950 21.81% 585
NW_021162157.1 770 1.28% 67
NW_021162185.1 20 0.23% 2
NW_021162208.1 540 0.22% 51
NW_021162222.1 870 2.30% 85
NW_021162226.1 450 1.03% 42
NW_021162246.1 19750 18.70% 1661
NW_021162251.1 13260 18.57% 1109
NW_021162253.1 140 0.45% 12
NW_021162263.1 300 1.13% 28
NW_021162265.1 5070 13.12% 411
NW_021162274.1 19680 19.38% 1654
NW_021162277.1 1370 5.51% 119
NW_021162463.1 200 2.65% 18
NW_021162495.1 150 2.28% 14
NW_021162553.1 250 2.89% 20
NW_021162593.1 80 0.86% 8
NW_021162599.1 2330 24.85% 185
NW_021162621.1 170 1.74% 16
NW_021162643.1 2980 11.73% 255
NW_021162814.1 250 2.02% 22
NW_021162871.1 360 2.59% 32
2543 contigs with no values (90345934 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53923319 1 150 12.03 10
global segment-length histogram

Files

Filename Size md5
STR-BF_TAC3-PLPP4-LHX8_GABA.bw 293.79 MB 56aba1d3469e1923869ddc02d207294d
genomic_resource.yaml 1.17 KB 86bf7ee1bdacd466f89fc4fed865624b
statistics/