Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STR_Cholinergic_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_Cholinergic_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_Cholinergic_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STR_Cholinergic_GABA float

johansen2025Crossspecies_atac_macaque_STR_Cholinergic_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STR_Cholinergic_GABA [0.463, 51.9]
n
397,083,747
mean
0.649
sd
0.55

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 39708374713.36% 34017947
NC_005943.1 1400 8.45% 126
NC_027914.1 349540 2.97% 32705
NC_041754.1 34782660 15.55% 2960504
NC_041755.1 26764320 13.64% 2302306
NC_041756.1 26475930 14.29% 2266522
NC_041757.1 21920110 12.90% 1895391
NC_041758.1 21114680 11.27% 1841075
NC_041759.1 22813970 12.74% 1971501
NC_041760.1 25844680 15.21% 2204481
NC_041761.1 19431310 13.34% 1672784
NC_041762.1 19835170 14.79% 1692332
NC_041763.1 18297730 18.39% 1534390
NC_041764.1 19144430 14.39% 1638778
NC_041765.1 17334956 13.33% 1494261
NC_041766.1 15679470 14.42% 1341957
NC_041767.1 19819420 15.48% 1684043
NC_041768.1 16647690 14.70% 1419684
NC_041769.1 15020350 18.86% 1258551
NC_041770.1 11235450 11.77% 975896
NC_041771.1 9630660 12.93% 831360
NC_041772.1 10498120 18.00% 878364
NC_041773.1 13592090 17.62% 1145502
NC_041774.1 10073350 6.57% 906821
NW_021160097.1 40 0.11% 4
NW_021160098.1 490 1.23% 40
NW_021160099.1 180 0.45% 17
NW_021160102.1 710 1.41% 68
NW_021160105.1 570 1.04% 55
NW_021160106.1 1030 1.85% 92
NW_021160107.1 430 0.77% 42
NW_021160109.1 2420 2.94% 220
NW_021160110.1 5400 4.57% 472
NW_021160111.1 4890 3.68% 464
NW_021160113.1 21750 18.70% 1795
NW_021160114.1 2980 4.52% 266
NW_021160116.1 330 0.93% 30
NW_021160121.1 690 0.80% 65
NW_021160122.1 1300 1.41% 124
NW_021160123.1 1040 1.96% 98
NW_021160125.1 20 0.08% 2
NW_021160136.1 1010 1.69% 89
NW_021160140.1 2150 1.65% 203
NW_021160141.1 2360 1.76% 220
NW_021160142.1 4280 8.95% 377
NW_021160144.1 25700 2.09% 2429
NW_021160145.1 300 1.12% 28
NW_021160147.1 360 1.20% 35
NW_021160148.1 1800 5.24% 154
NW_021160150.1 1130 3.01% 101
NW_021160155.1 1300 2.38% 113
NW_021160158.1 920 1.22% 86
NW_021160159.1 1990 2.32% 187
NW_021160161.1 22180 3.00% 1994
NW_021160167.1 460 1.22% 39
NW_021160168.1 120 0.29% 12
NW_021160175.1 14550 7.86% 1314
NW_021160179.1 400 1.03% 39
NW_021160182.1 2180 3.75% 192
NW_021160184.1 750 1.22% 63
NW_021160185.1 370 0.60% 33
NW_021160186.1 2010 3.12% 178
NW_021160187.1 550 0.72% 54
NW_021160188.1 1660 2.00% 154
NW_021160189.1 2220 2.19% 208
NW_021160190.1 1510 4.23% 128
NW_021160191.1 590 2.12% 54
NW_021160193.1 20 0.06% 2
NW_021160196.1 3080 6.68% 272
NW_021160197.1 1220 2.35% 112
NW_021160199.1 600 1.07% 56
NW_021160200.1 870 1.47% 77
NW_021160201.1 2580 4.20% 229
NW_021160202.1 600 0.92% 57
NW_021160203.1 1640 2.27% 151
NW_021160204.1 1840 2.53% 171
NW_021160205.1 1260 1.72% 118
NW_021160206.1 1080 1.29% 101
NW_021160207.1 1670 1.69% 148
NW_021160209.1 5810 0.87% 531
NW_021160211.1 2890 2.17% 245
NW_021160220.1 2800 4.20% 249
NW_021160221.1 1100 1.55% 100
NW_021160222.1 550 0.72% 51
NW_021160223.1 5530 6.64% 457
NW_021160225.1 2110 3.92% 188
NW_021160226.1 870 2.41% 82
NW_021160228.1 450 0.94% 44
NW_021160229.1 920 1.92% 87
NW_021160231.1 730 1.34% 65
NW_021160233.1 1010 1.56% 89
NW_021160234.1 7070 10.79% 583
NW_021160236.1 1820 2.34% 158
NW_021160237.1 6520 7.61% 561
NW_021160238.1 4470 4.28% 390
NW_021160239.1 480 1.65% 46
NW_021160242.1 540 1.83% 48
NW_021160243.1 200 0.63% 20
NW_021160244.1 9820 27.88% 810
NW_021160245.1 380 0.87% 37
NW_021160248.1 260 0.35% 26
NW_021160249.1 1890 2.50% 172
NW_021160250.1 570 0.89% 48
NW_021160251.1 2200 2.61% 198
NW_021160252.1 2460 2.78% 219
NW_021160255.1 820 2.92% 70
NW_021160263.1 710 1.35% 67
NW_021160266.1 310 0.41% 30
NW_021160268.1 870 1.28% 86
NW_021160270.1 890 2.56% 80
NW_021160271.1 460 1.32% 44
NW_021160272.1 1740 4.97% 150
NW_021160273.1 550 1.37% 54
NW_021160277.1 70 0.16% 7
NW_021160278.1 940 1.69% 88
NW_021160279.1 1110 1.68% 98
NW_021160282.1 2860 2.31% 257
NW_021160284.1 310 0.89% 28
NW_021160285.1 540 1.21% 52
NW_021160291.1 100 0.22% 10
NW_021160293.1 1760 3.33% 162
NW_021160294.1 2890 3.63% 252
NW_021160295.1 850 1.03% 85
NW_021160297.1 1310 2.33% 115
NW_021160298.1 840 3.08% 77
NW_021160300.1 2240 3.60% 207
NW_021160305.1 140 0.35% 12
NW_021160306.1 750 1.90% 71
NW_021160307.1 1140 2.16% 109
NW_021160308.1 1530 2.84% 142
NW_021160310.1 10130 17.39% 810
NW_021160311.1 3300 4.19% 289
NW_021160312.1 3720 4.21% 322
NW_021160313.1 2300 2.43% 214
NW_021160319.1 830 1.91% 75
NW_021160320.1 1130 2.15% 102
NW_021160324.1 2580 4.06% 236
NW_021160325.1 1290 1.98% 115
NW_021160326.1 940 1.44% 87
NW_021160327.1 1960 2.97% 172
NW_021160328.1 4550 7.19% 375
NW_021160329.1 1910 3.56% 169
NW_021160338.1 180 0.48% 18
NW_021160339.1 190 0.49% 19
NW_021160341.1 860 1.86% 80
NW_021160347.1 3860 2.34% 349
NW_021160353.1 1430 3.47% 127
NW_021160354.1 380 0.91% 37
NW_021160355.1 670 1.21% 62
NW_021160356.1 700 0.92% 65
NW_021160357.1 190 0.62% 18
NW_021160358.1 1120 2.84% 100
NW_021160359.1 1200 2.92% 107
NW_021160361.1 260 0.55% 26
NW_021160362.1 420 0.78% 42
NW_021160363.1 1560 2.56% 146
NW_021160364.1 1650 2.67% 157
NW_021160365.1 1900 2.86% 175
NW_021160366.1 1340 1.88% 123
NW_021160367.1 4530 5.93% 402
NW_021160368.1 470 0.60% 46
NW_021160369.1 560 0.68% 53
NW_021160370.1 1980 2.21% 182
NW_021160371.1 860 0.95% 81
NW_021160372.1 3520 2.62% 312
NW_021160373.1 3200 5.50% 280
NW_021160374.1 3310 2.66% 299
NW_021160375.1 6010 3.27% 548
NW_021160376.1 24200 2.80% 2217
NW_021160381.1 220 0.45% 19
NW_021160383.1 6470 9.38% 535
NW_021160384.1 380 0.48% 38
NW_021160401.1 240 1.47% 23
NW_021160410.1 2560 15.56% 198
NW_021160417.1 410 0.72% 41
NW_021160452.1 330 1.95% 31
NW_021160482.1 30 0.17% 2
NW_021160484.1 340 1.95% 32
NW_021160495.1 19470 2.36% 1777
NW_021160514.1 380 2.11% 37
NW_021160523.1 140 0.77% 14
NW_021160525.1 490 2.70% 46
NW_021160535.1 540 2.95% 49
NW_021160549.1 610 3.29% 52
NW_021160573.1 1800 9.46% 154
NW_021160589.1 40 0.21% 4
NW_021160606.1 14550 1.45% 1329
NW_021160623.1 160 0.81% 16
NW_021160625.1 40 0.20% 4
NW_021160629.1 20 0.10% 2
NW_021160635.1 40 0.20% 4
NW_021160655.1 750 3.65% 70
NW_021160656.1 280 1.37% 26
NW_021160678.1 140 0.67% 14
NW_021160682.1 3380 16.31% 274
NW_021160688.1 1070 5.24% 93
NW_021160701.1 3160 14.89% 277
NW_021160725.1 140 0.65% 11
NW_021160726.1 8920 41.02% 732
NW_021160734.1 170 0.78% 16
NW_021160757.1 20 0.09% 2
NW_021160770.1 8290 36.63% 709
NW_021160772.1 370 1.63% 32
NW_021160805.1 1680 7.17% 143
NW_021160821.1 40 0.17% 4
NW_021160827.1 15720 2.14% 1294
NW_021160832.1 140 0.58% 14
NW_021160834.1 290 1.20% 29
NW_021160848.1 80 0.33% 7
NW_021160890.1 390 1.54% 38
NW_021160903.1 1200 4.53% 109
NW_021160919.1 400 1.53% 33
NW_021160925.1 100 0.38% 10
NW_021160946.1 610 2.30% 56
NW_021160955.1 340 1.28% 30
NW_021160961.1 220 0.82% 22
NW_021160976.1 880 3.23% 78
NW_021160983.1 20 0.07% 2
NW_021161038.1 480 1.77% 42
NW_021161041.1 280 0.98% 27
NW_021161043.1 140 0.48% 14
NW_021161046.1 1100 3.73% 98
NW_021161062.1 50 0.17% 5
NW_021161066.1 1510 5.06% 137
NW_021161106.1 1100 3.59% 99
NW_021161107.1 180 0.59% 18
NW_021161113.1 1130 3.35% 109
NW_021161114.1 2410 7.81% 205
NW_021161133.1 640 0.43% 60
NW_021161138.1 80 0.26% 7
NW_021161152.1 480 1.53% 46
NW_021161164.1 1610 4.98% 144
NW_021161166.1 640 1.97% 62
NW_021161184.1 130 0.44% 12
NW_021161201.1 340 1.02% 31
NW_021161211.1 510 1.53% 47
NW_021161213.1 40 0.12% 4
NW_021161224.1 1580 4.69% 134
NW_021161226.1 1830 5.49% 152
NW_021161241.1 240 0.70% 20
NW_021161247.1 20 0.06% 2
NW_021161253.1 50 0.14% 5
NW_021161261.1 200 0.57% 19
NW_021161269.1 1630 4.64% 144
NW_021161282.1 6040 15.54% 508
NW_021161303.1 100 0.28% 10
NW_021161305.1 80 0.22% 8
NW_021161307.1 270 1.02% 24
NW_021161312.1 40 0.11% 4
NW_021161320.1 1950 1.99% 170
NW_021161336.1 1680 4.56% 144
NW_021161338.1 180 0.48% 18
NW_021161340.1 320 0.87% 27
NW_021161348.1 1040 2.78% 93
NW_021161355.1 1200 3.11% 101
NW_021161360.1 100 0.27% 10
NW_021161364.1 500 1.31% 48
NW_021161377.1 3260 8.20% 281
NW_021161379.1 80 0.21% 6
NW_021161380.1 20 0.06% 2
NW_021161385.1 60 0.15% 5
NW_021161392.1 3540 9.05% 309
NW_021161394.1 1220 3.14% 105
NW_021161396.1 60 0.15% 6
NW_021161399.1 450 2.05% 38
NW_021161404.1 180 0.46% 17
NW_021161413.1 430 1.09% 39
NW_021161421.1 140 0.35% 13
NW_021161422.1 110 0.28% 10
NW_021161427.1 370 0.92% 37
NW_021161433.1 100 0.25% 10
NW_021161437.1 80 0.27% 8
NW_021161446.1 190 0.46% 18
NW_021161463.1 40 0.10% 4
NW_021161468.1 490 1.17% 45
NW_021161470.1 80 0.19% 8
NW_021161486.1 2100 4.93% 170
NW_021161494.1 310 0.72% 28
NW_021161497.1 110 0.26% 11
NW_021161505.1 1790 4.15% 149
NW_021161507.1 680 1.57% 65
NW_021161508.1 3890 9.01% 333
NW_021161519.1 800 1.82% 78
NW_021161520.1 1650 3.83% 143
NW_021161523.1 390 0.90% 38
NW_021161525.1 2040 4.63% 180
NW_021161526.1 2730 6.20% 245
NW_021161532.1 210 0.47% 19
NW_021161535.1 140 0.31% 11
NW_021161537.1 3800 8.57% 313
NW_021161545.1 4570 10.23% 376
NW_021161552.1 100 0.24% 10
NW_021161554.1 410 0.91% 41
NW_021161561.1 2210 4.89% 188
NW_021161562.1 1710 3.76% 153
NW_021161567.1 230 0.51% 23
NW_021161570.1 30 0.07% 3
NW_021161582.1 3570 7.77% 322
NW_021161585.1 3620 7.86% 305
NW_021161590.1 5130 11.15% 433
NW_021161593.1 3790 8.14% 327
NW_021161596.1 12140 2.25% 1078
NW_021161601.1 1360 2.89% 130
NW_021161608.1 250 0.54% 23
NW_021161609.1 100 0.21% 10
NW_021161614.1 180 0.38% 18
NW_021161616.1 1870 3.91% 169
NW_021161617.1 40 0.08% 4
NW_021161627.1 1130 3.38% 98
NW_021161633.1 3480 7.04% 316
NW_021161642.1 730 1.47% 70
NW_021161648.1 7720 15.17% 639
NW_021161679.1 1170 2.24% 103
NW_021161680.1 560 1.08% 49
NW_021161686.1 4710 3.48% 413
NW_021161694.1 300 0.66% 26
NW_021161695.1 440 0.82% 40
NW_021161696.1 530 1.00% 48
NW_021161699.1 1670 3.45% 146
NW_021161700.1 80 0.15% 7
NW_021161713.1 220 0.41% 21
NW_021161715.1 100 0.18% 10
NW_021161718.1 3000 5.51% 255
NW_021161725.1 1410 4.48% 127
NW_021161737.1 840 1.50% 75
NW_021161743.1 500 0.89% 49
NW_021161747.1 40 0.07% 4
NW_021161754.1 3780 6.61% 332
NW_021161759.1 120 0.21% 12
NW_021161767.1 2870 2.81% 261
NW_021161769.1 580 1.00% 55
NW_021161772.1 690 0.93% 66
NW_021161784.1 300 5.83% 24
NW_021161790.1 4260 7.06% 373
NW_021161794.1 140 0.23% 14
NW_021161796.1 260 0.43% 26
NW_021161798.1 1080 2.29% 91
NW_021161830.1 1180 2.64% 111
NW_021161832.1 540 0.85% 51
NW_021161839.1 360 0.56% 35
NW_021161842.1 830 1.27% 78
NW_021161843.1 470 0.72% 44
NW_021161845.1 4430 6.77% 387
NW_021161850.1 62161 5.56% 5570
NW_021161853.1 2120 3.21% 188
NW_021161857.1 2140 3.23% 198
NW_021161862.1 380 0.57% 37
NW_021161876.1 2190 3.21% 204
NW_021161878.1 2280 3.35% 198
NW_021161881.1 2360 3.92% 211
NW_021161888.1 3560 5.13% 298
NW_021161902.1 2940 4.54% 274
NW_021161927.1 1080 1.44% 99
NW_021161934.1 1820 2.42% 165
NW_021161939.1 4140 5.47% 349
NW_021161954.1 2200 2.85% 197
NW_021161955.1 1150 1.48% 108
NW_021161956.1 3220 4.22% 271
NW_021161958.1 3990 5.08% 375
NW_021161961.1 2080 2.66% 191
NW_021161962.1 400 0.50% 38
NW_021161965.1 1450 1.83% 135
NW_021161996.1 820 0.95% 78
NW_021162004.1 380 1.34% 33
NW_021162007.1 1330 1.51% 126
NW_021162009.1 10890 12.49% 913
NW_021162025.1 1800 2.02% 159
NW_021162035.1 400 0.43% 37
NW_021162047.1 810 0.85% 77
NW_021162055.1 4130 4.15% 351
NW_021162083.1 2760 1.60% 262
NW_021162091.1 5030 4.44% 435
NW_021162100.1 6320 5.03% 517
NW_021162108.1 4680 14.68% 388
NW_021162157.1 610 1.01% 57
NW_021162208.1 120 0.05% 12
NW_021162222.1 440 1.16% 44
NW_021162226.1 310 0.71% 29
NW_021162246.1 9880 9.35% 829
NW_021162251.1 7280 10.19% 630
NW_021162263.1 70 0.26% 6
NW_021162265.1 3160 8.18% 273
NW_021162274.1 10430 10.27% 881
NW_021162277.1 680 2.73% 60
NW_021162463.1 170 2.25% 15
NW_021162495.1 100 1.52% 10
NW_021162553.1 70 0.81% 7
NW_021162593.1 20 0.22% 2
NW_021162599.1 1660 17.71% 129
NW_021162621.1 180 1.84% 17
NW_021162643.1 2220 8.73% 199
NW_021162814.1 210 1.69% 20
NW_021162871.1 340 2.45% 30
NW_021163002.1 20 0.13% 2
2546 contigs with no values (90436929 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34017947 6 120 11.67 10
global segment-length histogram

Files

Filename Size md5
STR_Cholinergic_GABA.bw 210.77 MB 8be71e40513a9a6e4ba2bc651961c675
genomic_resource.yaml 1.14 KB 534b7d25b844f74ddc3deb96af4e6af5
statistics/