Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STR_FS_PTHLH-PVALB_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_FS_PTHLH-PVALB_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_FS_PTHLH-PVALB_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STR_FS_PTHLH-PVALB_GABA float

johansen2025Crossspecies_atac_macaque_STR_FS_PTHLH-PVALB_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STR_FS_PTHLH-PVALB_GABA [0.0154, 58.1]
n
2,090,725,590
mean
0.0973
sd
0.255

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 209072559070.36% 183034268
NC_005943.1 2310 13.95% 222
NC_027914.1 3441390 29.28% 284122
NC_041754.1 172350750 77.07% 15223222
NC_041755.1 145105140 73.96% 12655556
NC_041756.1 138890197 74.96% 12158945
NC_041757.1 124252160 73.11% 10800184
NC_041758.1 129807370 69.30% 11134406
NC_041759.1 129470320 72.30% 11236553
NC_041760.1 129347070 76.15% 11399498
NC_041761.1 105670480 72.54% 9206716
NC_041762.1 99769740 74.39% 8762175
NC_041763.1 79114720 79.50% 7112975
NC_041764.1 99193480 74.54% 8718280
NC_041765.1 96488736 74.20% 8407595
NC_041766.1 81481200 74.93% 7154129
NC_041767.1 96413856 75.29% 8514522
NC_041768.1 83770530 73.95% 7353933
NC_041769.1 63494724 79.74% 5728472
NC_041770.1 67360860 70.58% 5843197
NC_041771.1 54474560 73.15% 4746145
NC_041772.1 42724750 73.27% 3868890
NC_041773.1 60632325 78.60% 5422746
NC_041774.1 81997250 53.46% 6837930
NW_021160097.1 1280 3.45% 108
NW_021160098.1 5390 13.48% 456
NW_021160099.1 4050 10.02% 343
NW_021160102.1 7910 15.76% 641
NW_021160105.1 5300 9.66% 450
NW_021160106.1 12900 23.23% 1059
NW_021160107.1 6370 11.46% 531
NW_021160109.1 16320 19.83% 1394
NW_021160110.1 30580 25.89% 2585
NW_021160111.1 39940 30.02% 3206
NW_021160113.1 71010 61.04% 6290
NW_021160114.1 19570 29.69% 1710
NW_021160116.1 2880 8.14% 241
NW_021160121.1 6820 7.91% 577
NW_021160122.1 19040 20.69% 1606
NW_021160123.1 9200 17.38% 801
NW_021160125.1 710 2.81% 58
NW_021160136.1 9930 16.62% 827
NW_021160140.1 27520 21.13% 2328
NW_021160141.1 29190 21.76% 2468
NW_021160142.1 30680 64.17% 2721
NW_021160144.1 289639 23.55% 24263
NW_021160145.1 4510 16.78% 379
NW_021160147.1 4640 15.45% 398
NW_021160148.1 10290 29.98% 894
NW_021160150.1 5070 13.52% 468
NW_021160155.1 7660 14.05% 649
NW_021160158.1 11080 14.70% 947
NW_021160159.1 19230 22.41% 1520
NW_021160161.1 193122 26.15% 16167
NW_021160167.1 2520 6.66% 198
NW_021160168.1 1620 3.89% 149
NW_021160175.1 103470 55.89% 8615
NW_021160179.1 5010 12.89% 419
NW_021160182.1 15910 27.39% 1366
NW_021160184.1 5170 8.43% 444
NW_021160185.1 5980 9.63% 509
NW_021160186.1 19880 30.83% 1658
NW_021160187.1 7060 9.24% 599
NW_021160188.1 11560 13.94% 966
NW_021160189.1 12110 11.95% 1025
NW_021160190.1 9960 27.87% 872
NW_021160191.1 4210 15.11% 357
NW_021160193.1 500 1.60% 50
NW_021160196.1 20455 44.37% 1760
NW_021160197.1 12280 23.70% 1057
NW_021160199.1 9070 16.22% 750
NW_021160200.1 9150 15.51% 779
NW_021160201.1 19800 32.22% 1663
NW_021160202.1 6770 10.34% 551
NW_021160203.1 20620 28.56% 1746
NW_021160204.1 18380 25.23% 1556
NW_021160205.1 10130 13.83% 831
NW_021160206.1 13130 15.68% 1105
NW_021160207.1 18870 19.10% 1612
NW_021160209.1 47530 7.09% 3983
NW_021160211.1 14530 10.90% 1251
NW_021160220.1 22300 33.42% 1931
NW_021160221.1 12870 18.16% 1067
NW_021160222.1 4070 5.33% 347
NW_021160223.1 26900 32.29% 2357
NW_021160225.1 15460 28.72% 1303
NW_021160226.1 9870 27.39% 820
NW_021160228.1 7210 15.07% 629
NW_021160229.1 7350 15.32% 610
NW_021160231.1 6540 12.00% 546
NW_021160233.1 8970 13.88% 764
NW_021160234.1 25090 38.28% 2267
NW_021160236.1 12510 16.08% 1044
NW_021160237.1 28870 33.68% 2416
NW_021160238.1 24520 23.48% 2111
NW_021160239.1 4720 16.19% 392
NW_021160242.1 5120 17.33% 428
NW_021160243.1 2340 7.42% 200
NW_021160244.1 25060 71.15% 2358
NW_021160245.1 5930 13.55% 503
NW_021160248.1 6230 8.33% 532
NW_021160249.1 13410 17.72% 1161
NW_021160250.1 4180 6.50% 346
NW_021160251.1 21430 25.38% 1762
NW_021160252.1 27110 30.59% 2305
NW_021160255.1 5680 20.23% 499
NW_021160263.1 4790 9.10% 408
NW_021160266.1 6400 8.53% 568
NW_021160268.1 8720 12.88% 723
NW_021160270.1 7350 21.10% 614
NW_021160271.1 4050 11.65% 355
NW_021160272.1 6500 18.58% 590
NW_021160273.1 5120 12.74% 420
NW_021160277.1 2060 4.59% 182
NW_021160278.1 16840 30.27% 1427
NW_021160279.1 14230 21.56% 1194
NW_021160282.1 32080 25.93% 2728
NW_021160284.1 3710 10.66% 309
NW_021160285.1 7850 17.60% 679
NW_021160291.1 2170 4.79% 185
NW_021160293.1 15200 28.77% 1281
NW_021160294.1 21750 27.31% 1825
NW_021160295.1 15790 19.13% 1305
NW_021160297.1 12280 21.84% 1070
NW_021160298.1 6100 22.39% 516
NW_021160300.1 18830 30.24% 1635
NW_021160305.1 4300 10.67% 372
NW_021160306.1 6580 16.67% 561
NW_021160307.1 15320 29.08% 1272
NW_021160308.1 10240 18.99% 851
NW_021160310.1 27100 46.51% 2420
NW_021160311.1 29220 37.11% 2484
NW_021160312.1 22640 25.61% 1943
NW_021160313.1 20080 21.22% 1690
NW_021160319.1 11900 27.40% 996
NW_021160320.1 10500 19.98% 874
NW_021160324.1 17820 28.01% 1524
NW_021160325.1 13410 20.58% 1108
NW_021160326.1 11000 16.89% 922
NW_021160327.1 14540 22.04% 1234
NW_021160328.1 21580 34.08% 1919
NW_021160329.1 12970 24.15% 1086
NW_021160338.1 5290 14.10% 421
NW_021160339.1 2000 5.19% 164
NW_021160341.1 10430 22.52% 864
NW_021160347.1 41220 24.94% 3447
NW_021160353.1 13550 32.91% 1199
NW_021160354.1 5930 14.13% 490
NW_021160355.1 8590 15.46% 730
NW_021160356.1 9240 12.11% 794
NW_021160357.1 2550 8.37% 222
NW_021160358.1 10790 27.35% 920
NW_021160359.1 12350 30.08% 1041
NW_021160361.1 4880 10.37% 412
NW_021160362.1 6590 12.28% 557
NW_021160363.1 16210 26.61% 1353
NW_021160364.1 12990 21.01% 1105
NW_021160365.1 14690 22.11% 1220
NW_021160366.1 20940 29.39% 1732
NW_021160367.1 28190 36.90% 2413
NW_021160368.1 5410 6.85% 462
NW_021160369.1 4720 5.77% 421
NW_021160370.1 23450 26.20% 2018
NW_021160371.1 10850 12.00% 885
NW_021160372.1 41930 31.19% 3556
NW_021160373.1 21670 37.26% 1856
NW_021160374.1 27010 21.73% 2241
NW_021160375.1 50500 27.47% 4154
NW_021160376.1 158710 18.39% 12834
NW_021160381.1 1120 2.30% 97
NW_021160383.1 38767 56.19% 3327
NW_021160384.1 6680 8.39% 560
NW_021160401.1 2120 13.03% 186
NW_021160410.1 8940 54.33% 823
NW_021160417.1 4550 8.04% 383
NW_021160452.1 3700 21.85% 315
NW_021160482.1 670 3.88% 58
NW_021160484.1 5030 28.91% 415
NW_021160495.1 180050 21.85% 14908
NW_021160514.1 3880 21.53% 323
NW_021160523.1 1640 9.07% 147
NW_021160525.1 2270 12.51% 182
NW_021160535.1 4580 24.99% 377
NW_021160549.1 3360 18.10% 299
NW_021160573.1 7010 36.83% 595
NW_021160589.1 490 2.55% 40
NW_021160606.1 130820 13.01% 10862
NW_021160623.1 1870 9.45% 156
NW_021160625.1 350 1.77% 31
NW_021160629.1 600 3.01% 51
NW_021160635.1 890 4.43% 68
NW_021160655.1 6760 32.86% 561
NW_021160656.1 2710 13.24% 223
NW_021160678.1 1260 6.06% 106
NW_021160682.1 14175 68.40% 1283
NW_021160688.1 6840 33.50% 599
NW_021160701.1 7860 37.05% 699
NW_021160725.1 1660 7.67% 130
NW_021160726.1 14340 65.94% 1365
NW_021160734.1 1650 7.58% 141
NW_021160757.1 250 1.13% 21
NW_021160770.1 14050 62.08% 1323
NW_021160772.1 3630 16.01% 304
NW_021160805.1 9750 41.58% 852
NW_021160821.1 970 4.06% 80
NW_021160827.1 69280 9.44% 6034
NW_021160832.1 870 3.61% 73
NW_021160834.1 3480 14.43% 279
NW_021160835.1 30 0.18% 2
NW_021160848.1 340 1.40% 29
NW_021160868.1 140 0.57% 13
NW_021160890.1 6290 24.91% 518
NW_021160903.1 8676 32.76% 736
NW_021160919.1 2870 11.01% 243
NW_021160925.1 1620 6.21% 137
NW_021160946.1 5100 19.26% 448
NW_021160955.1 3730 14.05% 309
NW_021160961.1 2740 10.24% 238
NW_021160976.1 11020 40.49% 921
NW_021160983.1 290 1.06% 21
NW_021160986.1 130 0.48% 12
NW_021161026.1 150 0.54% 15
NW_021161033.1 150 0.52% 15
NW_021161038.1 3920 14.48% 329
NW_021161041.1 3000 10.52% 255
NW_021161043.1 880 3.02% 80
NW_021161046.1 5360 18.17% 480
NW_021161062.1 2060 6.95% 177
NW_021161066.1 11690 39.18% 1015
NW_021161106.1 7120 23.23% 584
NW_021161107.1 1660 5.40% 140
NW_021161113.1 12000 35.58% 1011
NW_021161114.1 6490 21.04% 577
NW_021161131.1 260 0.83% 25
NW_021161133.1 9010 6.06% 755
NW_021161138.1 720 2.31% 57
NW_021161152.1 6120 19.45% 511
NW_021161164.1 4320 13.37% 374
NW_021161166.1 11110 34.19% 916
NW_021161184.1 1630 5.52% 137
NW_021161201.1 3860 11.62% 318
NW_021161211.1 7170 21.49% 591
NW_021161213.1 1040 3.12% 98
NW_021161224.1 9450 28.04% 816
NW_021161226.1 5690 17.07% 492
NW_021161241.1 1120 3.27% 100
NW_021161247.1 130 0.38% 13
NW_021161253.1 270 0.78% 23
NW_021161261.1 3350 9.58% 271
NW_021161269.1 14030 39.97% 1162
NW_021161274.1 80 0.23% 6
NW_021161282.1 22420 57.67% 2010
NW_021161303.1 2090 5.81% 183
NW_021161305.1 1290 3.58% 111
NW_021161307.1 2190 8.25% 185
NW_021161312.1 590 1.65% 55
NW_021161320.1 11710 11.92% 998
NW_021161336.1 6160 16.71% 550
NW_021161338.1 3660 9.84% 312
NW_021161340.1 4750 12.92% 402
NW_021161348.1 8080 21.58% 660
NW_021161355.1 8070 20.89% 685
NW_021161360.1 1110 2.96% 101
NW_021161364.1 4510 11.81% 385
NW_021161377.1 17610 44.29% 1493
NW_021161379.1 450 1.18% 41
NW_021161380.1 390 1.23% 39
NW_021161385.1 1350 3.48% 116
NW_021161392.1 12380 31.65% 1093
NW_021161394.1 5960 15.35% 516
NW_021161396.1 250 0.64% 23
NW_021161399.1 4210 19.20% 347
NW_021161404.1 3360 8.52% 295
NW_021161413.1 6500 16.41% 518
NW_021161421.1 860 2.16% 71
NW_021161422.1 840 2.12% 74
NW_021161427.1 4190 10.45% 362
NW_021161433.1 1300 3.21% 116
NW_021161437.1 1660 5.53% 150
NW_021161446.1 3010 7.36% 251
NW_021161463.1 170 0.41% 15
NW_021161468.1 3750 8.94% 324
NW_021161470.1 1390 3.32% 113
NW_021161483.1 210 0.50% 20
NW_021161486.1 8260 19.41% 706
NW_021161494.1 1510 3.53% 126
NW_021161497.1 1230 2.87% 107
NW_021161505.1 8460 19.63% 741
NW_021161507.1 10540 24.35% 858
NW_021161508.1 20304 47.05% 1736
NW_021161519.1 8420 19.20% 674
NW_021161520.1 5910 13.71% 528
NW_021161523.1 5350 12.37% 445
NW_021161525.1 16830 38.23% 1414
NW_021161526.1 9500 21.57% 821
NW_021161532.1 1840 4.14% 166
NW_021161535.1 2730 6.11% 234
NW_021161537.1 15045 33.92% 1325
NW_021161545.1 15069 33.73% 1351
NW_021161552.1 1610 3.79% 146
NW_021161554.1 5790 12.82% 475
NW_021161561.1 13790 30.52% 1189
NW_021161562.1 12440 27.36% 1081
NW_021161567.1 3290 7.23% 277
NW_021161570.1 190 0.42% 19
NW_021161582.1 15420 33.57% 1331
NW_021161585.1 17530 38.04% 1517
NW_021161590.1 23020 50.03% 1978
NW_021161593.1 21220 45.60% 1795
NW_021161596.1 77770 14.42% 6676
NW_021161601.1 6430 13.67% 534
NW_021161608.1 2930 6.27% 246
NW_021161609.1 1150 2.44% 86
NW_021161614.1 4300 9.01% 357
NW_021161616.1 9100 19.02% 779
NW_021161617.1 810 1.69% 75
NW_021161627.1 8820 26.38% 753
NW_021161633.1 29360 59.42% 2448
NW_021161642.1 8190 16.46% 699
NW_021161648.1 23790 46.75% 2184
NW_021161679.1 9870 18.93% 841
NW_021161680.1 5230 10.11% 433
NW_021161686.1 29270 21.64% 2537
NW_021161694.1 2810 6.18% 242
NW_021161695.1 6540 12.24% 553
NW_021161696.1 4270 8.05% 364
NW_021161699.1 12114 25.05% 1023
NW_021161700.1 810 1.53% 69
NW_021161713.1 2790 5.18% 243
NW_021161715.1 930 1.71% 80
NW_021161718.1 17560 32.23% 1561
NW_021161725.1 7220 22.95% 590
NW_021161737.1 7850 14.06% 651
NW_021161743.1 3150 5.63% 269
NW_021161747.1 1180 2.09% 106
NW_021161754.1 27780 48.57% 2455
NW_021161759.1 1660 2.89% 140
NW_021161767.1 15320 15.00% 1296
NW_021161769.1 9070 15.64% 758
NW_021161772.1 8630 11.67% 717
NW_021161784.1 2320 45.07% 189
NW_021161790.1 24470 40.55% 2099
NW_021161794.1 3080 5.10% 265
NW_021161796.1 4380 7.25% 367
NW_021161798.1 7030 14.93% 595
NW_021161830.1 8890 19.87% 731
NW_021161832.1 3350 5.28% 290
NW_021161839.1 3010 4.70% 266
NW_021161842.1 7110 10.90% 599
NW_021161843.1 5050 7.75% 435
NW_021161845.1 26645 40.74% 2307
NW_021161850.1 470581 42.12% 39396
NW_021161853.1 15450 23.41% 1333
NW_021161857.1 10750 16.20% 890
NW_021161862.1 7930 11.99% 682
NW_021161876.1 21760 31.87% 1798
NW_021161878.1 11880 17.47% 982
NW_021161881.1 21040 34.93% 1813
NW_021161888.1 17240 24.83% 1488
NW_021161902.1 18820 29.04% 1599
NW_021161927.1 10690 14.29% 888
NW_021161934.1 17120 22.73% 1409
NW_021161939.1 25820 34.09% 2229
NW_021161954.1 9660 12.52% 796
NW_021161955.1 11480 14.81% 962
NW_021161956.1 20560 26.92% 1758
NW_021161958.1 29050 36.99% 2442
NW_021161961.1 19720 25.22% 1636
NW_021161962.1 2570 3.22% 204
NW_021161965.1 12450 15.75% 1049
NW_021161996.1 9810 11.41% 823
NW_021162004.1 2740 9.65% 245
NW_021162007.1 11490 13.08% 979
NW_021162009.1 45010 51.63% 3999
NW_021162025.1 9070 10.17% 778
NW_021162035.1 8110 8.69% 701
NW_021162047.1 13090 13.68% 1099
NW_021162055.1 17830 17.92% 1520
NW_021162083.1 31730 18.42% 2615
NW_021162091.1 20900 18.43% 1812
NW_021162100.1 17760 14.13% 1600
NW_021162108.1 20320 63.75% 1818
NW_021162157.1 2900 4.81% 255
NW_021162185.1 40 0.45% 4
NW_021162208.1 4750 1.91% 433
NW_021162222.1 9950 26.28% 803
NW_021162226.1 3820 8.75% 312
NW_021162246.1 63030 59.67% 5342
NW_021162251.1 39540 55.36% 3329
NW_021162253.1 560 1.79% 48
NW_021162263.1 1250 4.72% 113
NW_021162265.1 17810 46.08% 1515
NW_021162274.1 61650 60.71% 5461
NW_021162277.1 5970 24.00% 510
NW_021162460.1 190 2.53% 16
NW_021162463.1 710 9.41% 65
NW_021162495.1 860 13.05% 75
NW_021162553.1 1130 13.05% 89
NW_021162593.1 390 4.19% 36
NW_021162599.1 5820 62.08% 498
NW_021162621.1 1430 14.64% 115
NW_021162643.1 11850 46.63% 985
NW_021162814.1 1180 9.52% 96
NW_021162871.1 1650 11.89% 145
NW_021162949.1 120 0.80% 9
NW_021163002.1 150 0.95% 15
2534 contigs with no values (90140842 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 183034268 1 150 11.42 10
global segment-length histogram

Files

Filename Size md5
STR_FS_PTHLH-PVALB_GABA.bw 1018.78 MB 7b6fcd87dae4e430979df1b984323e74
genomic_resource.yaml 1.15 KB 6dd458fd7aa363126552355a29485059
statistics/