Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STR_LYPD6-RSPO2_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_LYPD6-RSPO2_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_LYPD6-RSPO2_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STR_LYPD6-RSPO2_GABA float

johansen2025Crossspecies_atac_macaque_STR_LYPD6-RSPO2_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STR_LYPD6-RSPO2_GABA [0.132, 40.1]
n
828,812,789
mean
0.25
sd
0.387

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 82881278927.89% 68007697
NC_005943.1 1730 10.44% 160
NC_027914.1 914590 7.78% 80620
NC_041754.1 71904810 32.16% 5871560
NC_041755.1 56342160 28.72% 4625791
NC_041756.1 55230040 29.81% 4524641
NC_041757.1 47202520 27.77% 3884586
NC_041758.1 45587160 24.34% 3782397
NC_041759.1 48965980 27.34% 4033761
NC_041760.1 52508250 30.91% 4293354
NC_041761.1 41113370 28.22% 3378015
NC_041762.1 40103340 29.90% 3280291
NC_041763.1 35914730 36.09% 2914465
NC_041764.1 41036820 30.84% 3356091
NC_041765.1 36806060 28.30% 3022298
NC_041766.1 32838520 30.20% 2686914
NC_041767.1 41030090 32.04% 3352393
NC_041768.1 33875590 29.90% 2777381
NC_041769.1 29885980 37.53% 2426464
NC_041770.1 25456210 26.67% 2095105
NC_041771.1 20851980 28.00% 1713356
NC_041772.1 20724600 35.54% 1691403
NC_041773.1 26819130 34.77% 2181760
NC_041774.1 22234870 14.50% 1908765
NW_021160097.1 270 0.73% 25
NW_021160098.1 1250 3.13% 119
NW_021160099.1 680 1.68% 63
NW_021160102.1 1600 3.19% 145
NW_021160105.1 900 1.64% 78
NW_021160106.1 3920 7.06% 333
NW_021160107.1 1100 1.98% 99
NW_021160109.1 4230 5.14% 370
NW_021160110.1 7650 6.48% 654
NW_021160111.1 10440 7.85% 936
NW_021160113.1 35860 30.83% 2986
NW_021160114.1 6230 9.45% 545
NW_021160116.1 470 1.33% 45
NW_021160121.1 1910 2.22% 174
NW_021160122.1 6530 7.09% 585
NW_021160123.1 3230 6.10% 283
NW_021160125.1 330 1.30% 31
NW_021160136.1 2290 3.83% 195
NW_021160140.1 4170 3.20% 360
NW_021160141.1 5390 4.02% 476
NW_021160142.1 13840 28.95% 1132
NW_021160144.1 57499 4.68% 5379
NW_021160145.1 1010 3.76% 90
NW_021160147.1 1230 4.09% 112
NW_021160148.1 3460 10.08% 290
NW_021160150.1 2090 5.57% 178
NW_021160155.1 1940 3.56% 172
NW_021160158.1 1830 2.43% 166
NW_021160159.1 2450 2.86% 228
NW_021160161.1 39820 5.39% 3460
NW_021160167.1 520 1.37% 48
NW_021160168.1 380 0.91% 35
NW_021160175.1 45600 24.63% 3750
NW_021160179.1 1330 3.42% 113
NW_021160182.1 5330 9.18% 456
NW_021160184.1 1550 2.53% 140
NW_021160185.1 920 1.48% 86
NW_021160186.1 6080 9.43% 511
NW_021160187.1 1550 2.03% 148
NW_021160188.1 1860 2.24% 169
NW_021160189.1 4640 4.58% 395
NW_021160190.1 2370 6.63% 193
NW_021160191.1 1360 4.88% 120
NW_021160196.1 8460 18.35% 692
NW_021160197.1 2220 4.28% 201
NW_021160199.1 1380 2.47% 127
NW_021160200.1 2900 4.92% 246
NW_021160201.1 4470 7.27% 381
NW_021160202.1 1130 1.73% 102
NW_021160203.1 6610 9.15% 560
NW_021160204.1 4800 6.59% 412
NW_021160205.1 2730 3.73% 243
NW_021160206.1 2360 2.82% 206
NW_021160207.1 6540 6.62% 581
NW_021160209.1 12070 1.80% 1038
NW_021160211.1 4600 3.45% 401
NW_021160220.1 7630 11.44% 620
NW_021160221.1 2520 3.56% 218
NW_021160222.1 1140 1.49% 107
NW_021160223.1 9090 10.91% 751
NW_021160225.1 4300 7.99% 380
NW_021160226.1 3890 10.80% 325
NW_021160228.1 1270 2.66% 115
NW_021160229.1 1510 3.15% 139
NW_021160231.1 1210 2.22% 110
NW_021160233.1 2770 4.29% 239
NW_021160234.1 12990 19.82% 1073
NW_021160236.1 2500 3.21% 224
NW_021160237.1 8470 9.88% 738
NW_021160238.1 8000 7.66% 675
NW_021160239.1 2010 6.89% 161
NW_021160242.1 1170 3.96% 105
NW_021160243.1 450 1.43% 39
NW_021160244.1 15810 44.89% 1308
NW_021160245.1 1810 4.14% 162
NW_021160248.1 1700 2.27% 149
NW_021160249.1 3830 5.06% 313
NW_021160250.1 750 1.17% 63
NW_021160251.1 4250 5.03% 387
NW_021160252.1 7530 8.50% 619
NW_021160255.1 1990 7.09% 170
NW_021160263.1 790 1.50% 75
NW_021160266.1 1460 1.95% 133
NW_021160268.1 1830 2.70% 169
NW_021160270.1 2470 7.09% 195
NW_021160271.1 1300 3.74% 109
NW_021160272.1 2880 8.23% 241
NW_021160273.1 980 2.44% 84
NW_021160277.1 310 0.69% 29
NW_021160278.1 4650 8.36% 411
NW_021160279.1 2870 4.35% 253
NW_021160282.1 7860 6.35% 675
NW_021160284.1 810 2.33% 71
NW_021160285.1 1500 3.36% 124
NW_021160291.1 260 0.57% 25
NW_021160293.1 3650 6.91% 327
NW_021160294.1 6720 8.44% 571
NW_021160295.1 5960 7.22% 517
NW_021160297.1 3290 5.85% 291
NW_021160298.1 1790 6.57% 154
NW_021160300.1 6170 9.91% 527
NW_021160305.1 550 1.36% 49
NW_021160306.1 1900 4.81% 163
NW_021160307.1 3800 7.21% 326
NW_021160308.1 2350 4.36% 214
NW_021160310.1 12070 20.72% 995
NW_021160311.1 7610 9.66% 655
NW_021160312.1 7100 8.03% 615
NW_021160313.1 9150 9.67% 785
NW_021160319.1 2240 5.16% 207
NW_021160320.1 2770 5.27% 227
NW_021160324.1 5740 9.02% 488
NW_021160325.1 2890 4.44% 258
NW_021160326.1 2270 3.48% 199
NW_021160327.1 3620 5.49% 311
NW_021160328.1 10180 16.08% 852
NW_021160329.1 3910 7.28% 328
NW_021160338.1 1060 2.82% 95
NW_021160339.1 460 1.19% 43
NW_021160341.1 2980 6.44% 263
NW_021160347.1 9040 5.47% 815
NW_021160353.1 4280 10.39% 351
NW_021160354.1 1430 3.41% 120
NW_021160355.1 2200 3.96% 197
NW_021160356.1 1610 2.11% 145
NW_021160357.1 400 1.31% 40
NW_021160358.1 2900 7.35% 251
NW_021160359.1 2910 7.09% 254
NW_021160361.1 1030 2.19% 89
NW_021160362.1 1280 2.39% 119
NW_021160363.1 3760 6.17% 314
NW_021160364.1 3040 4.92% 256
NW_021160365.1 5820 8.76% 506
NW_021160366.1 4660 6.54% 406
NW_021160367.1 8040 10.52% 675
NW_021160368.1 780 0.99% 77
NW_021160369.1 470 0.57% 41
NW_021160370.1 6420 7.17% 553
NW_021160371.1 2520 2.79% 225
NW_021160372.1 9480 7.05% 827
NW_021160373.1 6560 11.28% 556
NW_021160374.1 5160 4.15% 469
NW_021160375.1 12470 6.78% 1107
NW_021160376.1 33220 3.85% 3010
NW_021160381.1 220 0.45% 20
NW_021160383.1 11310 16.39% 930
NW_021160384.1 920 1.16% 84
NW_021160401.1 430 2.64% 42
NW_021160410.1 4520 27.47% 366
NW_021160417.1 850 1.50% 78
NW_021160452.1 900 5.32% 81
NW_021160482.1 20 0.12% 2
NW_021160484.1 1500 8.62% 123
NW_021160495.1 15820 1.92% 1492
NW_021160514.1 1150 6.38% 96
NW_021160523.1 360 1.99% 34
NW_021160525.1 670 3.69% 61
NW_021160535.1 740 4.04% 70
NW_021160549.1 1410 7.59% 105
NW_021160573.1 2880 15.13% 246
NW_021160589.1 20 0.10% 2
NW_021160606.1 24440 2.43% 2194
NW_021160623.1 880 4.45% 73
NW_021160625.1 80 0.40% 8
NW_021160629.1 240 1.21% 17
NW_021160635.1 280 1.39% 26
NW_021160655.1 1690 8.21% 151
NW_021160656.1 490 2.39% 47
NW_021160678.1 340 1.64% 29
NW_021160682.1 6100 29.43% 490
NW_021160688.1 2300 11.26% 191
NW_021160701.1 3790 17.86% 325
NW_021160725.1 260 1.20% 25
NW_021160726.1 10980 50.49% 974
NW_021160734.1 300 1.38% 30
NW_021160757.1 60 0.27% 6
NW_021160770.1 9360 41.36% 827
NW_021160772.1 950 4.19% 82
NW_021160805.1 4140 17.66% 341
NW_021160821.1 200 0.84% 18
NW_021160827.1 28020 3.82% 2326
NW_021160832.1 230 0.96% 22
NW_021160834.1 560 2.32% 56
NW_021160848.1 70 0.29% 6
NW_021160868.1 40 0.16% 4
NW_021160890.1 1700 6.73% 147
NW_021160903.1 2220 8.38% 189
NW_021160919.1 960 3.68% 88
NW_021160925.1 140 0.54% 14
NW_021160946.1 1290 4.87% 119
NW_021160955.1 860 3.24% 76
NW_021160961.1 550 2.06% 53
NW_021160976.1 4520 16.61% 367
NW_021160983.1 60 0.22% 4
NW_021161026.1 20 0.07% 2
NW_021161033.1 20 0.07% 2
NW_021161038.1 1730 6.39% 153
NW_021161041.1 610 2.14% 60
NW_021161043.1 220 0.75% 22
NW_021161046.1 2510 8.51% 213
NW_021161062.1 990 3.34% 81
NW_021161066.1 3510 11.76% 288
NW_021161106.1 1650 5.38% 143
NW_021161107.1 340 1.11% 29
NW_021161113.1 3210 9.52% 272
NW_021161114.1 3590 11.64% 310
NW_021161133.1 1640 1.10% 154
NW_021161138.1 130 0.42% 10
NW_021161152.1 1360 4.32% 115
NW_021161164.1 1190 3.68% 104
NW_021161166.1 2170 6.68% 200
NW_021161184.1 230 0.78% 23
NW_021161201.1 950 2.86% 81
NW_021161211.1 1100 3.30% 100
NW_021161213.1 80 0.24% 8
NW_021161224.1 4250 12.61% 345
NW_021161226.1 2380 7.14% 181
NW_021161241.1 280 0.82% 26
NW_021161253.1 20 0.06% 2
NW_021161261.1 1470 4.21% 127
NW_021161269.1 2640 7.52% 225
NW_021161274.1 20 0.06% 2
NW_021161282.1 11630 29.92% 984
NW_021161303.1 330 0.92% 33
NW_021161305.1 190 0.53% 17
NW_021161307.1 490 1.85% 43
NW_021161312.1 20 0.06% 2
NW_021161320.1 2370 2.41% 218
NW_021161336.1 1060 2.88% 91
NW_021161338.1 530 1.43% 52
NW_021161340.1 660 1.80% 59
NW_021161348.1 1900 5.07% 163
NW_021161355.1 3280 8.49% 272
NW_021161360.1 160 0.43% 13
NW_021161364.1 1260 3.30% 100
NW_021161377.1 5530 13.91% 461
NW_021161379.1 110 0.29% 10
NW_021161380.1 120 0.38% 12
NW_021161385.1 250 0.64% 25
NW_021161392.1 5750 14.70% 491
NW_021161394.1 1680 4.33% 140
NW_021161396.1 40 0.10% 4
NW_021161399.1 1220 5.56% 107
NW_021161404.1 1080 2.74% 101
NW_021161413.1 2550 6.44% 212
NW_021161421.1 120 0.30% 12
NW_021161422.1 230 0.58% 19
NW_021161427.1 930 2.32% 79
NW_021161433.1 330 0.82% 28
NW_021161437.1 190 0.63% 19
NW_021161446.1 750 1.83% 71
NW_021161463.1 110 0.26% 11
NW_021161468.1 600 1.43% 53
NW_021161470.1 200 0.48% 19
NW_021161483.1 40 0.09% 4
NW_021161486.1 2100 4.93% 173
NW_021161494.1 340 0.79% 30
NW_021161497.1 350 0.82% 30
NW_021161505.1 2510 5.82% 204
NW_021161507.1 2800 6.47% 241
NW_021161508.1 7280 16.87% 584
NW_021161519.1 3050 6.95% 261
NW_021161520.1 3370 7.82% 310
NW_021161523.1 1300 3.00% 113
NW_021161525.1 8680 19.72% 700
NW_021161526.1 3170 7.20% 278
NW_021161532.1 320 0.72% 32
NW_021161535.1 770 1.72% 71
NW_021161537.1 4130 9.31% 338
NW_021161545.1 5650 12.65% 452
NW_021161552.1 460 1.08% 45
NW_021161554.1 1030 2.28% 93
NW_021161561.1 6090 13.48% 493
NW_021161562.1 3800 8.36% 311
NW_021161567.1 540 1.19% 52
NW_021161570.1 60 0.13% 6
NW_021161582.1 5250 11.43% 444
NW_021161585.1 6020 13.06% 508
NW_021161590.1 9710 21.10% 766
NW_021161593.1 5900 12.68% 501
NW_021161596.1 21100 3.91% 1818
NW_021161601.1 1070 2.27% 98
NW_021161608.1 570 1.22% 50
NW_021161609.1 160 0.34% 16
NW_021161614.1 1124 2.36% 104
NW_021161616.1 2620 5.48% 221
NW_021161617.1 120 0.25% 12
NW_021161627.1 2010 6.01% 171
NW_021161633.1 12420 25.13% 1022
NW_021161642.1 690 1.39% 64
NW_021161648.1 12180 23.94% 969
NW_021161679.1 3040 5.83% 250
NW_021161680.1 1210 2.34% 105
NW_021161686.1 7700 5.69% 646
NW_021161694.1 570 1.25% 52
NW_021161695.1 1080 2.02% 97
NW_021161696.1 810 1.53% 76
NW_021161699.1 3400 7.03% 293
NW_021161700.1 20 0.04% 2
NW_021161713.1 330 0.61% 31
NW_021161715.1 100 0.18% 10
NW_021161718.1 8170 15.00% 658
NW_021161725.1 1800 5.72% 156
NW_021161737.1 1510 2.70% 137
NW_021161743.1 340 0.61% 32
NW_021161747.1 170 0.30% 13
NW_021161754.1 10180 17.80% 869
NW_021161759.1 180 0.31% 16
NW_021161767.1 4240 4.15% 373
NW_021161769.1 2350 4.05% 200
NW_021161772.1 3330 4.50% 278
NW_021161784.1 580 11.27% 45
NW_021161790.1 8900 14.75% 734
NW_021161794.1 690 1.14% 63
NW_021161796.1 1270 2.10% 118
NW_021161798.1 1480 3.14% 120
NW_021161830.1 1990 4.45% 181
NW_021161832.1 820 1.29% 70
NW_021161839.1 720 1.12% 63
NW_021161842.1 1130 1.73% 107
NW_021161843.1 940 1.44% 84
NW_021161845.1 9150 13.99% 761
NW_021161850.1 70231 6.29% 6373
NW_021161853.1 5370 8.14% 441
NW_021161857.1 2190 3.30% 202
NW_021161862.1 2630 3.97% 236
NW_021161876.1 3470 5.08% 308
NW_021161878.1 1940 2.85% 167
NW_021161881.1 7510 12.47% 622
NW_021161888.1 5360 7.72% 447
NW_021161902.1 4670 7.21% 377
NW_021161927.1 2420 3.23% 208
NW_021161934.1 2710 3.60% 237
NW_021161939.1 5190 6.85% 462
NW_021161954.1 2910 3.77% 261
NW_021161955.1 3500 4.52% 293
NW_021161956.1 8300 10.87% 673
NW_021161958.1 5360 6.83% 471
NW_021161961.1 6060 7.75% 528
NW_021161962.1 450 0.56% 40
NW_021161965.1 2130 2.69% 198
NW_021161996.1 3350 3.90% 281
NW_021162004.1 600 2.11% 51
NW_021162007.1 2480 2.82% 231
NW_021162009.1 19910 22.84% 1619
NW_021162025.1 2640 2.96% 228
NW_021162035.1 2570 2.75% 229
NW_021162047.1 1900 1.99% 180
NW_021162055.1 5740 5.77% 485
NW_021162083.1 5260 3.05% 494
NW_021162091.1 7570 6.68% 630
NW_021162100.1 8460 6.73% 725
NW_021162108.1 10550 33.10% 849
NW_021162157.1 680 1.13% 62
NW_021162208.1 1190 0.48% 115
NW_021162222.1 2120 5.60% 187
NW_021162226.1 890 2.04% 85
NW_021162246.1 14880 14.09% 1256
NW_021162251.1 5850 8.19% 514
NW_021162253.1 60 0.19% 6
NW_021162263.1 350 1.32% 32
NW_021162265.1 6100 15.78% 503
NW_021162274.1 20940 20.62% 1732
NW_021162277.1 1540 6.19% 132
NW_021162460.1 20 0.27% 2
NW_021162463.1 150 1.99% 12
NW_021162495.1 160 2.43% 13
NW_021162553.1 210 2.42% 21
NW_021162593.1 90 0.97% 8
NW_021162599.1 2160 23.04% 180
NW_021162621.1 420 4.30% 38
NW_021162643.1 4075 16.03% 343
NW_021162814.1 270 2.18% 26
NW_021162871.1 240 1.73% 22
2542 contigs with no values (90321545 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 68007697 1 140 12.19 10
global segment-length histogram

Files

Filename Size md5
STR_LYPD6-RSPO2_GABA.bw 489.01 MB 7d528167090b950817e600c9e55c30be
genomic_resource.yaml 1.14 KB 0d4eb69018c1c96c7a0d431a4f3acaa2
statistics/