Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STR_SST-ADARB2_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_SST-ADARB2_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_SST-ADARB2_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STR_SST-ADARB2_GABA float

johansen2025Crossspecies_atac_macaque_STR_SST-ADARB2_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STR_SST-ADARB2_GABA [0.747, 120]
n
212,657,299
mean
0.953
sd
0.73

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2126572997.16% 18971404
NC_005943.1 740 4.47% 62
NC_027914.1 94490 0.80% 9152
NC_041754.1 19173430 8.57% 1698232
NC_041755.1 13763530 7.02% 1239297
NC_041756.1 13718870 7.40% 1227297
NC_041757.1 11113700 6.54% 1004185
NC_041758.1 10229940 5.46% 932891
NC_041759.1 11351840 6.34% 1025626
NC_041760.1 13955090 8.22% 1241621
NC_041761.1 9787020 6.72% 880288
NC_041762.1 10404860 7.76% 930433
NC_041763.1 10695550 10.75% 931184
NC_041764.1 10264720 7.71% 916110
NC_041765.1 8877000 6.83% 800850
NC_041766.1 8373930 7.70% 749098
NC_041767.1 11351260 8.86% 1000734
NC_041768.1 8928890 7.88% 792456
NC_041769.1 9154450 11.50% 794187
NC_041770.1 5696800 5.97% 516959
NC_041771.1 4933720 6.62% 445538
NC_041772.1 7086700 12.15% 606719
NC_041773.1 7800530 10.11% 683758
NC_041774.1 5381400 3.51% 498565
NW_021160097.1 80 0.22% 8
NW_021160098.1 280 0.70% 26
NW_021160099.1 110 0.27% 11
NW_021160102.1 270 0.54% 27
NW_021160105.1 350 0.64% 33
NW_021160106.1 1050 1.89% 101
NW_021160107.1 260 0.47% 26
NW_021160109.1 1040 1.26% 93
NW_021160110.1 4100 3.47% 357
NW_021160111.1 1160 0.87% 111
NW_021160113.1 15020 12.91% 1254
NW_021160114.1 2180 3.31% 196
NW_021160116.1 100 0.28% 10
NW_021160121.1 380 0.44% 37
NW_021160122.1 870 0.95% 84
NW_021160123.1 580 1.10% 53
NW_021160136.1 720 1.21% 67
NW_021160140.1 870 0.67% 84
NW_021160141.1 950 0.71% 91
NW_021160142.1 3400 7.11% 308
NW_021160144.1 11369 0.92% 1119
NW_021160145.1 210 0.78% 21
NW_021160147.1 160 0.53% 14
NW_021160148.1 910 2.65% 81
NW_021160150.1 970 2.59% 84
NW_021160155.1 670 1.23% 62
NW_021160158.1 470 0.62% 43
NW_021160159.1 1090 1.27% 103
NW_021160161.1 14370 1.95% 1285
NW_021160167.1 100 0.26% 9
NW_021160168.1 80 0.19% 8
NW_021160175.1 11950 6.45% 1107
NW_021160179.1 300 0.77% 28
NW_021160182.1 1620 2.79% 145
NW_021160184.1 280 0.46% 27
NW_021160185.1 290 0.47% 25
NW_021160186.1 1260 1.95% 117
NW_021160187.1 320 0.42% 32
NW_021160188.1 950 1.15% 89
NW_021160189.1 460 0.45% 45
NW_021160190.1 1200 3.36% 104
NW_021160191.1 240 0.86% 24
NW_021160193.1 20 0.06% 2
NW_021160196.1 1720 3.73% 149
NW_021160197.1 670 1.29% 62
NW_021160199.1 440 0.79% 43
NW_021160200.1 500 0.85% 47
NW_021160201.1 990 1.61% 94
NW_021160202.1 250 0.38% 25
NW_021160203.1 940 1.30% 93
NW_021160204.1 770 1.06% 73
NW_021160205.1 440 0.60% 44
NW_021160206.1 650 0.78% 61
NW_021160207.1 630 0.64% 62
NW_021160209.1 3460 0.52% 317
NW_021160211.1 1050 0.79% 99
NW_021160220.1 2120 3.18% 188
NW_021160221.1 380 0.54% 38
NW_021160222.1 270 0.35% 26
NW_021160223.1 3480 4.18% 304
NW_021160225.1 1040 1.93% 99
NW_021160226.1 640 1.78% 60
NW_021160228.1 210 0.44% 20
NW_021160229.1 400 0.83% 39
NW_021160231.1 560 1.03% 55
NW_021160233.1 860 1.33% 74
NW_021160234.1 5260 8.02% 424
NW_021160236.1 700 0.90% 67
NW_021160237.1 3360 3.92% 283
NW_021160238.1 2610 2.50% 227
NW_021160239.1 100 0.34% 10
NW_021160242.1 330 1.12% 30
NW_021160243.1 130 0.41% 12
NW_021160244.1 7540 21.41% 619
NW_021160245.1 260 0.59% 25
NW_021160248.1 180 0.24% 18
NW_021160249.1 740 0.98% 70
NW_021160250.1 360 0.56% 34
NW_021160251.1 1180 1.40% 109
NW_021160252.1 2050 2.31% 177
NW_021160255.1 410 1.46% 34
NW_021160263.1 80 0.15% 8
NW_021160266.1 240 0.32% 24
NW_021160268.1 360 0.53% 35
NW_021160270.1 640 1.84% 58
NW_021160271.1 300 0.86% 27
NW_021160272.1 1150 3.29% 98
NW_021160273.1 270 0.67% 23
NW_021160277.1 70 0.16% 6
NW_021160278.1 600 1.08% 57
NW_021160279.1 740 1.12% 72
NW_021160282.1 2310 1.87% 216
NW_021160284.1 140 0.40% 14
NW_021160285.1 330 0.74% 28
NW_021160291.1 60 0.13% 6
NW_021160293.1 1240 2.35% 110
NW_021160294.1 1710 2.15% 154
NW_021160295.1 620 0.75% 62
NW_021160297.1 720 1.28% 69
NW_021160298.1 360 1.32% 33
NW_021160300.1 1540 2.47% 141
NW_021160305.1 160 0.40% 16
NW_021160306.1 360 0.91% 34
NW_021160307.1 450 0.85% 43
NW_021160308.1 440 0.82% 42
NW_021160310.1 6700 11.50% 528
NW_021160311.1 2510 3.19% 227
NW_021160312.1 2370 2.68% 211
NW_021160313.1 1560 1.65% 145
NW_021160319.1 520 1.20% 52
NW_021160320.1 560 1.07% 46
NW_021160324.1 1320 2.08% 121
NW_021160325.1 840 1.29% 81
NW_021160326.1 350 0.54% 33
NW_021160327.1 1100 1.67% 101
NW_021160328.1 2930 4.63% 249
NW_021160329.1 900 1.68% 85
NW_021160338.1 60 0.16% 6
NW_021160339.1 100 0.26% 10
NW_021160341.1 410 0.89% 37
NW_021160347.1 1560 0.94% 146
NW_021160353.1 550 1.34% 53
NW_021160354.1 110 0.26% 11
NW_021160355.1 240 0.43% 20
NW_021160356.1 510 0.67% 51
NW_021160357.1 80 0.26% 8
NW_021160358.1 680 1.72% 59
NW_021160359.1 730 1.78% 70
NW_021160361.1 340 0.72% 30
NW_021160362.1 210 0.39% 21
NW_021160363.1 1040 1.71% 98
NW_021160364.1 870 1.41% 75
NW_021160365.1 1070 1.61% 101
NW_021160366.1 930 1.31% 90
NW_021160367.1 2890 3.78% 250
NW_021160368.1 110 0.14% 10
NW_021160369.1 470 0.57% 44
NW_021160370.1 1150 1.29% 111
NW_021160371.1 520 0.58% 48
NW_021160372.1 3050 2.27% 274
NW_021160373.1 2160 3.71% 196
NW_021160374.1 850 0.68% 80
NW_021160375.1 4100 2.23% 383
NW_021160376.1 21720 2.52% 1987
NW_021160381.1 100 0.21% 10
NW_021160383.1 3080 4.46% 278
NW_021160384.1 180 0.23% 18
NW_021160401.1 180 1.11% 16
NW_021160410.1 2710 16.47% 213
NW_021160417.1 240 0.42% 22
NW_021160452.1 120 0.71% 12
NW_021160482.1 60 0.35% 6
NW_021160484.1 270 1.55% 27
NW_021160495.1 16920 2.05% 1527
NW_021160514.1 90 0.50% 9
NW_021160523.1 110 0.61% 8
NW_021160525.1 380 2.09% 36
NW_021160535.1 160 0.87% 15
NW_021160549.1 320 1.72% 28
NW_021160573.1 1230 6.46% 108
NW_021160589.1 40 0.21% 4
NW_021160606.1 12000 1.19% 1093
NW_021160623.1 140 0.71% 14
NW_021160629.1 20 0.10% 2
NW_021160635.1 80 0.40% 8
NW_021160655.1 360 1.75% 33
NW_021160656.1 320 1.56% 29
NW_021160678.1 50 0.24% 5
NW_021160682.1 1800 8.69% 161
NW_021160688.1 780 3.82% 68
NW_021160701.1 1740 8.20% 141
NW_021160726.1 6660 30.62% 541
NW_021160757.1 20 0.09% 2
NW_021160770.1 6260 27.66% 507
NW_021160772.1 200 0.88% 20
NW_021160805.1 810 3.45% 73
NW_021160821.1 20 0.08% 2
NW_021160827.1 9880 1.35% 856
NW_021160832.1 40 0.17% 4
NW_021160834.1 120 0.50% 12
NW_021160868.1 40 0.16% 4
NW_021160890.1 140 0.55% 14
NW_021160903.1 310 1.17% 30
NW_021160919.1 200 0.77% 17
NW_021160925.1 70 0.27% 7
NW_021160946.1 590 2.23% 53
NW_021160955.1 330 1.24% 32
NW_021160961.1 60 0.22% 6
NW_021160976.1 540 1.98% 53
NW_021160983.1 80 0.29% 6
NW_021161033.1 20 0.07% 2
NW_021161038.1 410 1.51% 37
NW_021161041.1 80 0.28% 7
NW_021161043.1 20 0.07% 2
NW_021161046.1 580 1.97% 49
NW_021161062.1 20 0.07% 2
NW_021161066.1 720 2.41% 63
NW_021161106.1 420 1.37% 40
NW_021161107.1 60 0.20% 5
NW_021161113.1 640 1.90% 64
NW_021161114.1 1170 3.79% 97
NW_021161131.1 20 0.06% 2
NW_021161133.1 370 0.25% 34
NW_021161138.1 40 0.13% 4
NW_021161152.1 400 1.27% 39
NW_021161164.1 600 1.86% 52
NW_021161166.1 480 1.48% 44
NW_021161184.1 110 0.37% 11
NW_021161201.1 120 0.36% 12
NW_021161211.1 280 0.84% 27
NW_021161213.1 80 0.24% 8
NW_021161224.1 810 2.40% 73
NW_021161226.1 640 1.92% 55
NW_021161253.1 80 0.23% 7
NW_021161261.1 120 0.34% 12
NW_021161269.1 1270 3.62% 121
NW_021161282.1 3220 8.28% 282
NW_021161303.1 60 0.17% 6
NW_021161305.1 60 0.17% 6
NW_021161307.1 100 0.38% 10
NW_021161312.1 70 0.20% 4
NW_021161320.1 880 0.90% 87
NW_021161336.1 330 0.90% 27
NW_021161338.1 60 0.16% 6
NW_021161340.1 170 0.46% 16
NW_021161348.1 430 1.15% 42
NW_021161355.1 520 1.35% 47
NW_021161360.1 70 0.19% 6
NW_021161364.1 250 0.65% 23
NW_021161377.1 1810 4.55% 153
NW_021161385.1 20 0.05% 2
NW_021161392.1 2420 6.19% 210
NW_021161394.1 320 0.82% 30
NW_021161399.1 420 1.92% 34
NW_021161404.1 120 0.30% 10
NW_021161413.1 180 0.45% 15
NW_021161421.1 100 0.25% 10
NW_021161422.1 20 0.05% 2
NW_021161427.1 320 0.80% 30
NW_021161433.1 20 0.05% 2
NW_021161437.1 120 0.40% 12
NW_021161446.1 110 0.27% 10
NW_021161468.1 110 0.26% 11
NW_021161470.1 20 0.05% 2
NW_021161486.1 850 2.00% 75
NW_021161494.1 130 0.30% 12
NW_021161497.1 20 0.05% 2
NW_021161505.1 500 1.16% 47
NW_021161507.1 460 1.06% 45
NW_021161508.1 1640 3.80% 155
NW_021161519.1 350 0.80% 35
NW_021161520.1 1450 3.36% 130
NW_021161523.1 510 1.18% 50
NW_021161525.1 1810 4.11% 162
NW_021161526.1 1290 2.93% 108
NW_021161532.1 80 0.18% 8
NW_021161535.1 90 0.20% 9
NW_021161537.1 2780 6.27% 232
NW_021161545.1 3360 7.52% 269
NW_021161552.1 60 0.14% 6
NW_021161554.1 340 0.75% 33
NW_021161561.1 980 2.17% 87
NW_021161562.1 1400 3.08% 131
NW_021161567.1 110 0.24% 10
NW_021161570.1 20 0.04% 2
NW_021161582.1 1960 4.27% 172
NW_021161585.1 2050 4.45% 177
NW_021161590.1 2400 5.22% 221
NW_021161593.1 2240 4.81% 202
NW_021161596.1 6970 1.29% 626
NW_021161601.1 530 1.13% 48
NW_021161608.1 200 0.43% 20
NW_021161609.1 40 0.09% 4
NW_021161614.1 180 0.38% 16
NW_021161616.1 1800 3.76% 161
NW_021161627.1 550 1.64% 54
NW_021161633.1 1690 3.42% 157
NW_021161642.1 340 0.68% 32
NW_021161648.1 4550 8.94% 384
NW_021161679.1 450 0.86% 40
NW_021161680.1 220 0.43% 20
NW_021161686.1 3470 2.56% 289
NW_021161694.1 120 0.26% 10
NW_021161695.1 190 0.36% 19
NW_021161696.1 310 0.58% 31
NW_021161699.1 1050 2.17% 101
NW_021161700.1 20 0.04% 2
NW_021161713.1 40 0.07% 4
NW_021161715.1 40 0.07% 4
NW_021161718.1 1450 2.66% 136
NW_021161725.1 260 0.83% 26
NW_021161737.1 800 1.43% 75
NW_021161743.1 300 0.54% 28
NW_021161747.1 30 0.05% 3
NW_021161754.1 3880 6.78% 331
NW_021161759.1 20 0.03% 2
NW_021161767.1 750 0.73% 71
NW_021161769.1 340 0.59% 32
NW_021161772.1 470 0.64% 45
NW_021161784.1 90 1.75% 9
NW_021161790.1 2280 3.78% 205
NW_021161794.1 80 0.13% 8
NW_021161796.1 250 0.41% 25
NW_021161798.1 850 1.81% 75
NW_021161830.1 980 2.19% 94
NW_021161832.1 120 0.19% 11
NW_021161839.1 100 0.16% 10
NW_021161842.1 650 1.00% 63
NW_021161843.1 360 0.55% 35
NW_021161845.1 2380 3.64% 205
NW_021161850.1 83590 7.48% 7208
NW_021161853.1 900 1.36% 84
NW_021161857.1 450 0.68% 45
NW_021161862.1 300 0.45% 30
NW_021161876.1 1220 1.79% 115
NW_021161878.1 1320 1.94% 117
NW_021161881.1 900 1.49% 84
NW_021161888.1 1310 1.89% 118
NW_021161902.1 1490 2.30% 134
NW_021161927.1 470 0.63% 46
NW_021161934.1 890 1.18% 81
NW_021161939.1 2710 3.58% 236
NW_021161954.1 1050 1.36% 95
NW_021161955.1 360 0.46% 36
NW_021161956.1 1970 2.58% 170
NW_021161958.1 2600 3.31% 237
NW_021161961.1 810 1.04% 76
NW_021161962.1 100 0.13% 10
NW_021161965.1 530 0.67% 51
NW_021161996.1 340 0.40% 33
NW_021162004.1 100 0.35% 10
NW_021162007.1 380 0.43% 38
NW_021162009.1 7220 8.28% 625
NW_021162025.1 830 0.93% 76
NW_021162035.1 220 0.24% 22
NW_021162047.1 600 0.63% 58
NW_021162055.1 1700 1.71% 162
NW_021162083.1 1030 0.60% 102
NW_021162091.1 2460 2.17% 215
NW_021162100.1 3270 2.60% 276
NW_021162108.1 2310 7.25% 195
NW_021162157.1 300 0.50% 28
NW_021162208.1 100 0.04% 10
NW_021162222.1 100 0.26% 10
NW_021162226.1 150 0.34% 13
NW_021162246.1 4830 4.57% 452
NW_021162251.1 4740 6.64% 423
NW_021162253.1 20 0.06% 2
NW_021162263.1 60 0.23% 6
NW_021162265.1 2720 7.04% 227
NW_021162274.1 7440 7.33% 636
NW_021162277.1 320 1.29% 31
NW_021162463.1 60 0.79% 6
NW_021162495.1 40 0.61% 4
NW_021162553.1 40 0.46% 4
NW_021162599.1 1250 13.33% 106
NW_021162621.1 140 1.43% 14
NW_021162643.1 1320 5.19% 119
NW_021162871.1 140 1.01% 13
NW_021163002.1 20 0.13% 2
2556 contigs with no values (90723348 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 18971404 9 120 11.21 10
global segment-length histogram

Files

Filename Size md5
STR_SST-ADARB2_GABA.bw 142.43 MB 8f29004ed3fd0ef5711a90737985d0b4
genomic_resource.yaml 1.14 KB 24dffcc78e240aad9213a7de5e7c2954
statistics/