Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STR_SST-CHODL_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_SST-CHODL_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_SST-CHODL_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STR_SST-CHODL_GABA float

johansen2025Crossspecies_atac_macaque_STR_SST-CHODL_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STR_SST-CHODL_GABA [0.0453, 71.8]
n
1,450,098,616
mean
0.143
sd
0.301

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 145009861648.80% 120669317
NC_005943.1 2010 12.13% 197
NC_027914.1 1688790 14.37% 143158
NC_041754.1 123449630 55.21% 10314490
NC_041755.1 100150730 51.05% 8300986
NC_041756.1 96397317 52.03% 8009752
NC_041757.1 83317480 49.02% 6883366
NC_041758.1 82339850 43.96% 6778462
NC_041759.1 85532640 47.76% 7068905
NC_041760.1 91721290 54.00% 7635967
NC_041761.1 71305760 48.95% 5904073
NC_041762.1 70757300 52.76% 5872421
NC_041763.1 61059160 61.36% 5158143
NC_041764.1 69973340 52.59% 5824316
NC_041765.1 64570790 49.65% 5329713
NC_041766.1 57465730 52.85% 4777283
NC_041767.1 69489426 54.26% 5821822
NC_041768.1 59561700 52.58% 4966103
NC_041769.1 49808230 62.55% 4228098
NC_041770.1 44199560 46.31% 3657253
NC_041771.1 37254120 50.02% 3081183
NC_041772.1 33727200 57.84% 2887899
NC_041773.1 45934335 59.55% 3865869
NC_041774.1 47144300 30.74% 3885544
NW_021160097.1 440 1.19% 37
NW_021160098.1 2770 6.93% 243
NW_021160099.1 1760 4.35% 156
NW_021160102.1 3770 7.51% 321
NW_021160105.1 3240 5.91% 277
NW_021160106.1 8320 14.98% 707
NW_021160107.1 2410 4.34% 213
NW_021160109.1 8690 10.56% 756
NW_021160110.1 19750 16.72% 1672
NW_021160111.1 20360 15.31% 1733
NW_021160113.1 55100 47.36% 4768
NW_021160114.1 13220 20.06% 1132
NW_021160116.1 1430 4.04% 131
NW_021160121.1 4380 5.08% 390
NW_021160122.1 10130 11.01% 853
NW_021160123.1 5350 10.11% 458
NW_021160125.1 620 2.45% 55
NW_021160136.1 8110 13.58% 693
NW_021160140.1 10270 7.88% 899
NW_021160141.1 11640 8.68% 994
NW_021160142.1 22500 47.06% 1866
NW_021160144.1 134840 10.96% 11970
NW_021160145.1 1940 7.22% 154
NW_021160147.1 2910 9.69% 241
NW_021160148.1 6300 18.36% 535
NW_021160150.1 3430 9.15% 306
NW_021160155.1 5080 9.32% 450
NW_021160158.1 5830 7.74% 500
NW_021160159.1 11280 13.15% 929
NW_021160161.1 129102 17.48% 10743
NW_021160167.1 1000 2.64% 92
NW_021160168.1 460 1.10% 38
NW_021160175.1 82870 44.76% 6678
NW_021160179.1 2210 5.68% 198
NW_021160182.1 8850 15.24% 742
NW_021160184.1 4120 6.72% 358
NW_021160185.1 2650 4.27% 236
NW_021160186.1 12300 19.07% 1005
NW_021160187.1 3210 4.20% 290
NW_021160188.1 6830 8.23% 567
NW_021160189.1 8660 8.55% 738
NW_021160190.1 7970 22.30% 639
NW_021160191.1 2540 9.12% 213
NW_021160193.1 670 2.15% 57
NW_021160196.1 13430 29.13% 1090
NW_021160197.1 5800 11.19% 495
NW_021160199.1 3680 6.58% 339
NW_021160200.1 4540 7.70% 396
NW_021160201.1 9520 15.49% 776
NW_021160202.1 4750 7.25% 385
NW_021160203.1 11810 16.36% 997
NW_021160204.1 9560 13.13% 773
NW_021160205.1 5970 8.15% 503
NW_021160206.1 6760 8.07% 559
NW_021160207.1 9540 9.65% 828
NW_021160209.1 25830 3.86% 2184
NW_021160211.1 8240 6.18% 709
NW_021160220.1 12420 18.62% 1049
NW_021160221.1 5840 8.24% 521
NW_021160222.1 1760 2.30% 152
NW_021160223.1 19830 23.80% 1673
NW_021160225.1 8070 14.99% 651
NW_021160226.1 4650 12.91% 392
NW_021160228.1 3060 6.40% 266
NW_021160229.1 4320 9.00% 373
NW_021160231.1 6290 11.54% 527
NW_021160233.1 5270 8.15% 436
NW_021160234.1 19680 30.02% 1733
NW_021160236.1 6830 8.78% 598
NW_021160237.1 21760 25.38% 1811
NW_021160238.1 16220 15.53% 1375
NW_021160239.1 2090 7.17% 178
NW_021160242.1 2310 7.82% 198
NW_021160243.1 940 2.98% 83
NW_021160244.1 21560 61.22% 1959
NW_021160245.1 2960 6.76% 255
NW_021160248.1 2700 3.61% 240
NW_021160249.1 8050 10.64% 681
NW_021160250.1 2680 4.17% 197
NW_021160251.1 8800 10.42% 721
NW_021160252.1 15100 17.04% 1252
NW_021160255.1 3310 11.79% 279
NW_021160263.1 1830 3.48% 166
NW_021160266.1 4560 6.08% 388
NW_021160268.1 5480 8.09% 468
NW_021160270.1 4460 12.81% 373
NW_021160271.1 2020 5.81% 179
NW_021160272.1 4900 14.00% 429
NW_021160273.1 2380 5.92% 203
NW_021160277.1 960 2.14% 82
NW_021160278.1 6540 11.75% 525
NW_021160279.1 6410 9.71% 542
NW_021160282.1 20400 16.49% 1689
NW_021160284.1 1720 4.94% 138
NW_021160285.1 3590 8.05% 305
NW_021160291.1 1050 2.32% 98
NW_021160293.1 9060 17.15% 761
NW_021160294.1 12590 15.81% 1063
NW_021160295.1 6230 7.55% 541
NW_021160297.1 6890 12.25% 573
NW_021160298.1 2840 10.42% 234
NW_021160300.1 12820 20.59% 1041
NW_021160305.1 1470 3.65% 128
NW_021160306.1 3670 9.30% 312
NW_021160307.1 9680 18.37% 799
NW_021160308.1 5720 10.61% 497
NW_021160310.1 24220 41.57% 2149
NW_021160311.1 15740 19.99% 1333
NW_021160312.1 13210 14.94% 1140
NW_021160313.1 23290 24.61% 1981
NW_021160319.1 6180 14.23% 501
NW_021160320.1 5800 11.04% 475
NW_021160324.1 10410 16.37% 848
NW_021160325.1 6930 10.64% 576
NW_021160326.1 4200 6.45% 351
NW_021160327.1 8060 12.22% 687
NW_021160328.1 15630 24.68% 1359
NW_021160329.1 8950 16.67% 759
NW_021160338.1 1900 5.06% 171
NW_021160339.1 880 2.28% 83
NW_021160341.1 5060 10.93% 418
NW_021160347.1 19740 11.94% 1663
NW_021160353.1 6550 15.91% 557
NW_021160354.1 3800 9.05% 330
NW_021160355.1 4790 8.62% 398
NW_021160356.1 3880 5.08% 340
NW_021160357.1 1510 4.96% 120
NW_021160358.1 6510 16.50% 541
NW_021160359.1 6670 16.25% 549
NW_021160361.1 4090 8.69% 349
NW_021160362.1 2770 5.16% 239
NW_021160363.1 8130 13.34% 677
NW_021160364.1 6710 10.85% 575
NW_021160365.1 9570 14.41% 815
NW_021160366.1 9450 13.26% 783
NW_021160367.1 17880 23.41% 1527
NW_021160368.1 2420 3.07% 211
NW_021160369.1 2440 2.98% 230
NW_021160370.1 11260 12.58% 934
NW_021160371.1 5290 5.85% 448
NW_021160372.1 21010 15.63% 1781
NW_021160373.1 12890 22.17% 1092
NW_021160374.1 12340 9.93% 1059
NW_021160375.1 31130 16.93% 2554
NW_021160376.1 86770 10.06% 7304
NW_021160381.1 1020 2.09% 92
NW_021160383.1 20700 30.00% 1758
NW_021160384.1 2950 3.70% 264
NW_021160401.1 950 5.84% 79
NW_021160410.1 8010 48.68% 720
NW_021160417.1 2000 3.53% 160
NW_021160452.1 2840 16.77% 232
NW_021160482.1 340 1.97% 29
NW_021160484.1 2430 13.97% 201
NW_021160495.1 99010 12.02% 8357
NW_021160514.1 2180 12.10% 179
NW_021160523.1 990 5.48% 85
NW_021160525.1 1320 7.28% 119
NW_021160535.1 2040 11.13% 178
NW_021160549.1 2360 12.71% 207
NW_021160573.1 4890 25.69% 412
NW_021160589.1 80 0.42% 7
NW_021160606.1 72260 7.18% 6129
NW_021160623.1 1630 8.24% 138
NW_021160625.1 210 1.06% 19
NW_021160629.1 150 0.75% 14
NW_021160635.1 310 1.54% 28
NW_021160655.1 4110 19.98% 338
NW_021160656.1 1510 7.38% 127
NW_021160678.1 300 1.44% 28
NW_021160682.1 11305 54.55% 954
NW_021160688.1 4700 23.02% 417
NW_021160701.1 5750 27.10% 509
NW_021160725.1 720 3.33% 63
NW_021160726.1 13080 60.14% 1205
NW_021160734.1 440 2.02% 40
NW_021160737.1 20 0.09% 2
NW_021160757.1 60 0.27% 5
NW_021160770.1 12270 54.22% 1118
NW_021160772.1 2330 10.28% 195
NW_021160805.1 5720 24.40% 462
NW_021160821.1 320 1.34% 31
NW_021160827.1 49630 6.76% 4215
NW_021160832.1 340 1.41% 32
NW_021160834.1 1840 7.63% 154
NW_021160835.1 40 0.24% 4
NW_021160848.1 150 0.62% 13
NW_021160868.1 120 0.49% 12
NW_021160890.1 2360 9.35% 186
NW_021160903.1 5196 19.62% 383
NW_021160919.1 1280 4.91% 105
NW_021160925.1 690 2.65% 67
NW_021160946.1 2600 9.82% 229
NW_021160955.1 2270 8.55% 194
NW_021160961.1 1800 6.73% 154
NW_021160976.1 8150 29.94% 671
NW_021160983.1 150 0.55% 11
NW_021160986.1 20 0.07% 2
NW_021161026.1 140 0.50% 14
NW_021161033.1 70 0.24% 7
NW_021161038.1 2370 8.76% 215
NW_021161041.1 1750 6.14% 150
NW_021161043.1 800 2.74% 71
NW_021161046.1 3470 11.76% 303
NW_021161062.1 1030 3.48% 92
NW_021161066.1 7110 23.83% 578
NW_021161106.1 4370 14.26% 364
NW_021161107.1 880 2.86% 74
NW_021161113.1 5960 17.67% 491
NW_021161114.1 5040 16.34% 461
NW_021161131.1 120 0.38% 11
NW_021161133.1 4040 2.72% 357
NW_021161138.1 310 0.99% 30
NW_021161152.1 3700 11.76% 292
NW_021161164.1 2520 7.80% 205
NW_021161166.1 6130 18.86% 529
NW_021161184.1 610 2.06% 54
NW_021161201.1 1900 5.72% 173
NW_021161211.1 3570 10.70% 308
NW_021161213.1 480 1.44% 45
NW_021161224.1 6080 18.04% 475
NW_021161226.1 3730 11.19% 312
NW_021161241.1 820 2.39% 66
NW_021161247.1 80 0.23% 8
NW_021161253.1 90 0.26% 8
NW_021161261.1 1790 5.12% 164
NW_021161269.1 7420 21.14% 621
NW_021161274.1 20 0.06% 2
NW_021161282.1 16250 41.80% 1405
NW_021161303.1 670 1.86% 63
NW_021161305.1 500 1.39% 43
NW_021161307.1 1530 5.76% 120
NW_021161312.1 230 0.64% 22
NW_021161320.1 5580 5.68% 467
NW_021161336.1 3760 10.20% 334
NW_021161338.1 1070 2.88% 98
NW_021161340.1 1670 4.54% 144
NW_021161348.1 4630 12.37% 368
NW_021161355.1 4660 12.06% 405
NW_021161360.1 540 1.44% 50
NW_021161364.1 2380 6.23% 207
NW_021161377.1 11490 28.90% 942
NW_021161379.1 270 0.71% 23
NW_021161380.1 160 0.50% 16
NW_021161385.1 420 1.08% 35
NW_021161392.1 7920 20.25% 699
NW_021161394.1 3920 10.10% 327
NW_021161396.1 230 0.59% 20
NW_021161399.1 2950 13.46% 243
NW_021161404.1 1790 4.54% 155
NW_021161413.1 4150 10.48% 348
NW_021161421.1 430 1.08% 40
NW_021161422.1 510 1.29% 42
NW_021161427.1 2470 6.16% 206
NW_021161433.1 420 1.04% 39
NW_021161437.1 780 2.60% 71
NW_021161446.1 1660 4.06% 151
NW_021161463.1 40 0.10% 4
NW_021161468.1 1920 4.58% 160
NW_021161470.1 620 1.48% 57
NW_021161483.1 20 0.05% 2
NW_021161486.1 5020 11.79% 398
NW_021161494.1 580 1.35% 53
NW_021161497.1 670 1.56% 58
NW_021161505.1 5480 12.72% 476
NW_021161507.1 5900 13.63% 469
NW_021161508.1 12530 29.04% 1042
NW_021161519.1 5780 13.18% 486
NW_021161520.1 4230 9.82% 387
NW_021161523.1 3030 7.00% 253
NW_021161525.1 12430 28.23% 1044
NW_021161526.1 6670 15.14% 579
NW_021161532.1 1050 2.36% 91
NW_021161535.1 1330 2.98% 117
NW_021161537.1 10240 23.09% 849
NW_021161545.1 12000 26.86% 1054
NW_021161552.1 750 1.76% 65
NW_021161554.1 3030 6.71% 269
NW_021161561.1 8770 19.41% 741
NW_021161562.1 7290 16.03% 603
NW_021161567.1 1690 3.71% 150
NW_021161570.1 150 0.33% 15
NW_021161582.1 11560 25.16% 977
NW_021161585.1 10950 23.76% 924
NW_021161590.1 15290 33.23% 1229
NW_021161593.1 13910 29.89% 1148
NW_021161596.1 42350 7.85% 3588
NW_021161601.1 3470 7.38% 293
NW_021161608.1 1180 2.53% 102
NW_021161609.1 470 1.00% 45
NW_021161614.1 2230 4.67% 200
NW_021161616.1 5870 12.27% 512
NW_021161617.1 220 0.46% 21
NW_021161627.1 4700 14.06% 383
NW_021161633.1 18040 36.51% 1487
NW_021161642.1 3630 7.29% 313
NW_021161648.1 19160 37.66% 1658
NW_021161679.1 5140 9.86% 423
NW_021161680.1 2420 4.68% 214
NW_021161686.1 14520 10.73% 1234
NW_021161694.1 1470 3.23% 128
NW_021161695.1 3530 6.60% 300
NW_021161696.1 1820 3.43% 170
NW_021161699.1 6354 13.14% 514
NW_021161700.1 280 0.53% 27
NW_021161713.1 1200 2.23% 111
NW_021161715.1 340 0.62% 31
NW_021161718.1 13100 24.04% 1094
NW_021161725.1 4010 12.74% 330
NW_021161737.1 4340 7.77% 379
NW_021161743.1 1580 2.82% 127
NW_021161747.1 400 0.71% 33
NW_021161754.1 17080 29.86% 1449
NW_021161759.1 510 0.89% 47
NW_021161767.1 7540 7.38% 642
NW_021161769.1 3420 5.90% 299
NW_021161772.1 5520 7.47% 467
NW_021161784.1 1330 25.84% 114
NW_021161790.1 17510 29.02% 1428
NW_021161794.1 1290 2.13% 115
NW_021161796.1 2280 3.77% 200
NW_021161798.1 4380 9.30% 375
NW_021161830.1 5580 12.47% 478
NW_021161832.1 1940 3.06% 167
NW_021161839.1 1680 2.62% 143
NW_021161842.1 4170 6.39% 364
NW_021161843.1 2480 3.81% 210
NW_021161845.1 17440 26.67% 1467
NW_021161850.1 287101 25.70% 23577
NW_021161853.1 9730 14.74% 807
NW_021161857.1 9380 14.14% 771
NW_021161862.1 4200 6.35% 357
NW_021161876.1 11490 16.83% 952
NW_021161878.1 6540 9.62% 557
NW_021161881.1 11200 18.59% 952
NW_021161888.1 11570 16.66% 979
NW_021161902.1 12060 18.61% 996
NW_021161927.1 6720 8.98% 580
NW_021161934.1 7550 10.02% 631
NW_021161939.1 15720 20.75% 1373
NW_021161954.1 5660 7.34% 492
NW_021161955.1 5900 7.61% 486
NW_021161956.1 11850 15.52% 1011
NW_021161958.1 16570 21.10% 1339
NW_021161961.1 11040 14.12% 948
NW_021161962.1 1230 1.54% 100
NW_021161965.1 5630 7.12% 488
NW_021161996.1 5680 6.61% 472
NW_021162004.1 1410 4.97% 125
NW_021162007.1 6240 7.10% 527
NW_021162009.1 32340 37.10% 2721
NW_021162025.1 5340 5.99% 456
NW_021162035.1 4250 4.56% 379
NW_021162047.1 6320 6.60% 531
NW_021162055.1 10930 10.99% 947
NW_021162083.1 17410 10.10% 1501
NW_021162091.1 14760 13.02% 1244
NW_021162100.1 13180 10.49% 1161
NW_021162108.1 15020 47.12% 1273
NW_021162157.1 1610 2.67% 145
NW_021162208.1 1590 0.64% 144
NW_021162222.1 3290 8.69% 296
NW_021162226.1 1760 4.03% 160
NW_021162246.1 38080 36.05% 3064
NW_021162251.1 27740 38.84% 2278
NW_021162253.1 300 0.96% 27
NW_021162263.1 700 2.64% 62
NW_021162265.1 13190 34.13% 1101
NW_021162274.1 37930 37.35% 3156
NW_021162277.1 4010 16.12% 331
NW_021162460.1 60 0.80% 6
NW_021162463.1 510 6.76% 46
NW_021162495.1 480 7.29% 42
NW_021162553.1 810 9.35% 69
NW_021162593.1 100 1.08% 10
NW_021162599.1 4710 50.24% 403
NW_021162621.1 970 9.93% 81
NW_021162643.1 7430 29.23% 628
NW_021162814.1 600 4.84% 54
NW_021162871.1 1120 8.07% 86
NW_021162949.1 20 0.13% 2
NW_021163002.1 40 0.25% 4
2534 contigs with no values (90127892 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 120669317 1 150 12.02 10
global segment-length histogram

Files

Filename Size md5
STR_SST-CHODL_GABA.bw 728.78 MB f4eddff9283371d04dafb4cfb33e5a2e
genomic_resource.yaml 1.13 KB e41baaaa51878ba0b65747c4e6cd58f2
statistics/