Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STR_SST-RSPO2_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_SST-RSPO2_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_SST-RSPO2_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STR_SST-RSPO2_GABA float

johansen2025Crossspecies_atac_macaque_STR_SST-RSPO2_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STR_SST-RSPO2_GABA [0.0922, 37.8]
n
1,029,366,787
mean
0.199
sd
0.344

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 102936678734.64% 84135352
NC_005943.1 1800 10.87% 169
NC_027914.1 1267160 10.78% 109496
NC_041754.1 88935080 39.77% 7254145
NC_041755.1 70961880 36.17% 5788184
NC_041756.1 68373690 36.90% 5579273
NC_041757.1 58846660 34.62% 4804588
NC_041758.1 56300970 30.06% 4628018
NC_041759.1 61001830 34.06% 4986502
NC_041760.1 65516500 38.57% 5338562
NC_041761.1 50374230 34.58% 4115320
NC_041762.1 49671010 37.03% 4045207
NC_041763.1 44643570 44.86% 3636098
NC_041764.1 50442630 37.91% 4116312
NC_041765.1 45931766 35.32% 3745367
NC_041766.1 40214600 36.98% 3278753
NC_041767.1 50162810 39.17% 4098548
NC_041768.1 42660380 37.66% 3483525
NC_041769.1 36782890 46.19% 3007348
NC_041770.1 30700900 32.17% 2512148
NC_041771.1 26435870 35.50% 2153802
NC_041772.1 25351700 43.47% 2090868
NC_041773.1 33255150 43.11% 2710415
NC_041774.1 29604000 19.30% 2488039
NW_021160097.1 550 1.48% 48
NW_021160098.1 1650 4.13% 154
NW_021160099.1 820 2.03% 76
NW_021160102.1 2610 5.20% 223
NW_021160105.1 1720 3.14% 151
NW_021160106.1 5160 9.29% 437
NW_021160107.1 1180 2.12% 105
NW_021160109.1 5930 7.20% 516
NW_021160110.1 11560 9.79% 1001
NW_021160111.1 12260 9.22% 1083
NW_021160113.1 44760 38.48% 3805
NW_021160114.1 7210 10.94% 621
NW_021160116.1 720 2.03% 63
NW_021160121.1 2190 2.54% 194
NW_021160122.1 7250 7.88% 632
NW_021160123.1 2980 5.63% 261
NW_021160125.1 350 1.38% 32
NW_021160136.1 2280 3.82% 200
NW_021160140.1 5930 4.55% 521
NW_021160141.1 7950 5.93% 675
NW_021160142.1 16960 35.47% 1377
NW_021160144.1 74010 6.02% 6808
NW_021160145.1 900 3.35% 79
NW_021160147.1 1720 5.73% 162
NW_021160148.1 4650 13.55% 376
NW_021160150.1 2580 6.88% 228
NW_021160155.1 3130 5.74% 266
NW_021160158.1 3170 4.21% 270
NW_021160159.1 4980 5.80% 442
NW_021160161.1 56970 7.72% 4859
NW_021160167.1 520 1.37% 45
NW_021160168.1 570 1.37% 49
NW_021160175.1 52310 28.25% 4253
NW_021160179.1 1220 3.14% 112
NW_021160182.1 7290 12.55% 619
NW_021160184.1 1800 2.94% 154
NW_021160185.1 1780 2.87% 153
NW_021160186.1 8190 12.70% 686
NW_021160187.1 2300 3.01% 205
NW_021160188.1 3240 3.91% 268
NW_021160189.1 4650 4.59% 394
NW_021160190.1 4270 11.95% 339
NW_021160191.1 1670 5.99% 145
NW_021160193.1 60 0.19% 6
NW_021160196.1 10420 22.60% 833
NW_021160197.1 2940 5.67% 248
NW_021160199.1 1840 3.29% 168
NW_021160200.1 3290 5.58% 290
NW_021160201.1 5060 8.23% 409
NW_021160202.1 2130 3.25% 180
NW_021160203.1 8860 12.27% 738
NW_021160204.1 6070 8.33% 523
NW_021160205.1 3100 4.23% 274
NW_021160206.1 3650 4.36% 315
NW_021160207.1 7890 7.98% 704
NW_021160209.1 15240 2.27% 1302
NW_021160211.1 5400 4.05% 454
NW_021160220.1 9310 13.95% 770
NW_021160221.1 2910 4.11% 263
NW_021160222.1 1400 1.83% 129
NW_021160223.1 12310 14.78% 1052
NW_021160225.1 4800 8.92% 400
NW_021160226.1 4180 11.60% 348
NW_021160228.1 2140 4.47% 178
NW_021160229.1 2360 4.92% 204
NW_021160231.1 2070 3.80% 179
NW_021160233.1 4010 6.20% 327
NW_021160234.1 15890 24.24% 1343
NW_021160236.1 3480 4.47% 303
NW_021160237.1 10360 12.09% 868
NW_021160238.1 9630 9.22% 824
NW_021160239.1 1490 5.11% 131
NW_021160242.1 1360 4.60% 122
NW_021160243.1 520 1.65% 45
NW_021160244.1 18720 53.15% 1628
NW_021160245.1 2270 5.19% 194
NW_021160248.1 1730 2.31% 155
NW_021160249.1 4840 6.39% 419
NW_021160250.1 1080 1.68% 93
NW_021160251.1 5630 6.67% 480
NW_021160252.1 10620 11.98% 867
NW_021160255.1 2530 9.01% 218
NW_021160263.1 1150 2.19% 104
NW_021160266.1 1530 2.04% 141
NW_021160268.1 3040 4.49% 269
NW_021160270.1 2890 8.30% 251
NW_021160271.1 1520 4.37% 135
NW_021160272.1 3600 10.29% 301
NW_021160273.1 1810 4.50% 157
NW_021160277.1 560 1.25% 53
NW_021160278.1 4120 7.40% 366
NW_021160279.1 3830 5.80% 336
NW_021160282.1 12840 10.38% 1063
NW_021160284.1 630 1.81% 57
NW_021160285.1 2040 4.57% 182
NW_021160291.1 410 0.91% 40
NW_021160293.1 5600 10.60% 468
NW_021160294.1 7670 9.63% 644
NW_021160295.1 4820 5.84% 418
NW_021160297.1 4460 7.93% 374
NW_021160298.1 1520 5.58% 132
NW_021160300.1 8300 13.33% 694
NW_021160305.1 540 1.34% 51
NW_021160306.1 2970 7.53% 249
NW_021160307.1 5180 9.83% 436
NW_021160308.1 3290 6.10% 289
NW_021160310.1 14280 24.51% 1197
NW_021160311.1 10010 12.71% 838
NW_021160312.1 9610 10.87% 832
NW_021160313.1 8890 9.39% 754
NW_021160319.1 3580 8.24% 309
NW_021160320.1 3280 6.24% 284
NW_021160324.1 6680 10.50% 541
NW_021160325.1 3970 6.09% 333
NW_021160326.1 2390 3.67% 210
NW_021160327.1 5090 7.71% 435
NW_021160328.1 13160 20.78% 1079
NW_021160329.1 5430 10.11% 436
NW_021160338.1 1330 3.54% 121
NW_021160339.1 560 1.45% 52
NW_021160341.1 5500 11.88% 452
NW_021160347.1 13980 8.46% 1198
NW_021160353.1 4890 11.88% 412
NW_021160354.1 2490 5.93% 216
NW_021160355.1 3230 5.81% 284
NW_021160356.1 1770 2.32% 157
NW_021160357.1 580 1.90% 52
NW_021160358.1 4370 11.08% 358
NW_021160359.1 3080 7.50% 271
NW_021160361.1 2870 6.10% 247
NW_021160362.1 1670 3.11% 152
NW_021160363.1 4640 7.62% 408
NW_021160364.1 4720 7.64% 402
NW_021160365.1 6570 9.89% 540
NW_021160366.1 5450 7.65% 494
NW_021160367.1 11610 15.20% 971
NW_021160368.1 1240 1.57% 112
NW_021160369.1 1020 1.25% 95
NW_021160370.1 8170 9.13% 681
NW_021160371.1 3450 3.82% 309
NW_021160372.1 11920 8.87% 1026
NW_021160373.1 9290 15.98% 768
NW_021160374.1 6270 5.04% 567
NW_021160375.1 18160 9.88% 1541
NW_021160376.1 49140 5.70% 4364
NW_021160381.1 540 1.11% 52
NW_021160383.1 13930 20.19% 1134
NW_021160384.1 1310 1.65% 121
NW_021160401.1 380 2.34% 34
NW_021160410.1 5800 35.25% 482
NW_021160417.1 1010 1.78% 89
NW_021160452.1 830 4.90% 69
NW_021160482.1 40 0.23% 4
NW_021160484.1 1700 9.77% 147
NW_021160495.1 34160 4.15% 3067
NW_021160514.1 1460 8.10% 117
NW_021160523.1 550 3.04% 46
NW_021160525.1 470 2.59% 45
NW_021160535.1 1310 7.15% 112
NW_021160549.1 1610 8.67% 124
NW_021160573.1 3910 20.54% 319
NW_021160589.1 60 0.31% 6
NW_021160606.1 37080 3.69% 3237
NW_021160623.1 1040 5.26% 87
NW_021160625.1 20 0.10% 2
NW_021160629.1 180 0.90% 16
NW_021160635.1 120 0.60% 12
NW_021160655.1 1870 9.09% 160
NW_021160656.1 580 2.83% 54
NW_021160678.1 370 1.78% 34
NW_021160682.1 7975 38.48% 639
NW_021160688.1 2530 12.39% 222
NW_021160701.1 5140 24.23% 441
NW_021160725.1 210 0.97% 21
NW_021160726.1 11950 54.95% 1061
NW_021160734.1 500 2.30% 42
NW_021160757.1 80 0.36% 7
NW_021160770.1 10700 47.28% 948
NW_021160772.1 1370 6.04% 121
NW_021160805.1 3880 16.55% 306
NW_021160821.1 210 0.88% 19
NW_021160827.1 37630 5.13% 3128
NW_021160832.1 190 0.79% 15
NW_021160834.1 960 3.98% 87
NW_021160848.1 60 0.25% 6
NW_021160868.1 20 0.08% 2
NW_021160890.1 1990 7.88% 173
NW_021160903.1 3736 14.11% 293
NW_021160919.1 1030 3.95% 86
NW_021160925.1 310 1.19% 30
NW_021160946.1 1860 7.03% 160
NW_021160955.1 920 3.47% 80
NW_021160961.1 1270 4.75% 111
NW_021160976.1 4550 16.72% 359
NW_021160983.1 70 0.26% 7
NW_021160986.1 40 0.15% 4
NW_021161033.1 60 0.21% 6
NW_021161038.1 2210 8.16% 193
NW_021161041.1 680 2.39% 60
NW_021161043.1 320 1.10% 29
NW_021161046.1 2820 9.56% 237
NW_021161062.1 840 2.84% 80
NW_021161066.1 4020 13.47% 341
NW_021161106.1 2510 8.19% 205
NW_021161107.1 560 1.82% 43
NW_021161113.1 3060 9.07% 275
NW_021161114.1 3780 12.25% 322
NW_021161133.1 2720 1.83% 242
NW_021161138.1 210 0.67% 21
NW_021161152.1 2200 6.99% 180
NW_021161164.1 1820 5.63% 151
NW_021161166.1 3040 9.35% 255
NW_021161184.1 440 1.49% 38
NW_021161201.1 1280 3.85% 107
NW_021161211.1 1700 5.09% 150
NW_021161213.1 200 0.60% 20
NW_021161224.1 5460 16.20% 460
NW_021161226.1 2480 7.44% 202
NW_021161241.1 370 1.08% 35
NW_021161253.1 20 0.06% 2
NW_021161261.1 1070 3.06% 94
NW_021161269.1 4350 12.39% 364
NW_021161274.1 40 0.12% 4
NW_021161282.1 12090 31.10% 1002
NW_021161303.1 400 1.11% 40
NW_021161305.1 420 1.16% 38
NW_021161307.1 670 2.52% 60
NW_021161312.1 120 0.34% 12
NW_021161320.1 3930 4.00% 334
NW_021161336.1 1540 4.18% 139
NW_021161338.1 670 1.80% 61
NW_021161340.1 710 1.93% 57
NW_021161348.1 2480 6.62% 217
NW_021161355.1 4440 11.49% 371
NW_021161360.1 270 0.72% 25
NW_021161364.1 1480 3.88% 129
NW_021161377.1 7460 18.76% 612
NW_021161379.1 190 0.50% 17
NW_021161380.1 90 0.28% 9
NW_021161385.1 360 0.93% 30
NW_021161392.1 6090 15.57% 545
NW_021161394.1 2130 5.49% 180
NW_021161396.1 60 0.15% 6
NW_021161399.1 1690 7.71% 141
NW_021161404.1 910 2.31% 88
NW_021161413.1 2460 6.21% 216
NW_021161421.1 100 0.25% 9
NW_021161422.1 350 0.88% 27
NW_021161427.1 1400 3.49% 120
NW_021161433.1 360 0.89% 36
NW_021161437.1 390 1.30% 36
NW_021161446.1 1060 2.59% 92
NW_021161463.1 20 0.05% 2
NW_021161468.1 900 2.15% 81
NW_021161470.1 340 0.81% 30
NW_021161483.1 40 0.09% 3
NW_021161486.1 2940 6.91% 230
NW_021161494.1 560 1.31% 49
NW_021161497.1 390 0.91% 34
NW_021161505.1 3230 7.50% 270
NW_021161507.1 3490 8.06% 288
NW_021161508.1 9480 21.97% 777
NW_021161519.1 4430 10.10% 365
NW_021161520.1 3790 8.79% 345
NW_021161523.1 1390 3.21% 127
NW_021161525.1 8500 19.31% 692
NW_021161526.1 4220 9.58% 348
NW_021161532.1 460 1.03% 41
NW_021161535.1 980 2.19% 83
NW_021161537.1 6620 14.93% 569
NW_021161545.1 7200 16.11% 583
NW_021161552.1 620 1.46% 54
NW_021161554.1 2230 4.94% 199
NW_021161561.1 5920 13.10% 480
NW_021161562.1 5150 11.33% 417
NW_021161567.1 1400 3.08% 117
NW_021161570.1 60 0.13% 4
NW_021161582.1 6770 14.74% 564
NW_021161585.1 8050 17.47% 667
NW_021161590.1 11840 25.73% 946
NW_021161593.1 8240 17.71% 669
NW_021161596.1 26260 4.87% 2242
NW_021161601.1 1650 3.51% 152
NW_021161608.1 950 2.03% 86
NW_021161609.1 280 0.60% 27
NW_021161614.1 1730 3.63% 150
NW_021161616.1 4230 8.84% 365
NW_021161617.1 120 0.25% 12
NW_021161627.1 2570 7.69% 209
NW_021161633.1 14820 29.99% 1201
NW_021161642.1 1270 2.55% 113
NW_021161648.1 14670 28.83% 1225
NW_021161679.1 3560 6.83% 303
NW_021161680.1 1320 2.55% 115
NW_021161686.1 8990 6.64% 773
NW_021161694.1 810 1.78% 64
NW_021161695.1 1690 3.16% 156
NW_021161696.1 1060 2.00% 94
NW_021161699.1 4580 9.47% 377
NW_021161700.1 120 0.23% 11
NW_021161713.1 610 1.13% 56
NW_021161715.1 250 0.46% 25
NW_021161718.1 8680 15.93% 734
NW_021161725.1 2770 8.80% 242
NW_021161737.1 2210 3.96% 192
NW_021161743.1 720 1.29% 69
NW_021161747.1 310 0.55% 28
NW_021161754.1 12440 21.75% 1051
NW_021161759.1 450 0.78% 43
NW_021161767.1 4610 4.51% 413
NW_021161769.1 2360 4.07% 204
NW_021161772.1 2980 4.03% 252
NW_021161784.1 850 16.51% 70
NW_021161790.1 10640 17.63% 897
NW_021161794.1 930 1.54% 86
NW_021161796.1 1300 2.15% 116
NW_021161798.1 2140 4.55% 182
NW_021161830.1 2410 5.39% 219
NW_021161832.1 920 1.45% 81
NW_021161839.1 1120 1.75% 98
NW_021161842.1 2380 3.65% 225
NW_021161843.1 1160 1.78% 105
NW_021161845.1 11810 18.06% 980
NW_021161850.1 124710 11.16% 10745
NW_021161853.1 5810 8.80% 496
NW_021161857.1 2810 4.24% 263
NW_021161862.1 2870 4.34% 239
NW_021161876.1 4980 7.29% 442
NW_021161878.1 3480 5.12% 290
NW_021161881.1 9170 15.22% 768
NW_021161888.1 6650 9.58% 553
NW_021161902.1 6310 9.74% 529
NW_021161927.1 2600 3.48% 234
NW_021161934.1 4550 6.04% 379
NW_021161939.1 9130 12.05% 776
NW_021161954.1 4010 5.20% 347
NW_021161955.1 3970 5.12% 335
NW_021161956.1 9120 11.94% 765
NW_021161958.1 7840 9.98% 674
NW_021161961.1 5880 7.52% 507
NW_021161962.1 700 0.88% 63
NW_021161965.1 3060 3.87% 274
NW_021161996.1 3480 4.05% 297
NW_021162004.1 930 3.28% 77
NW_021162007.1 3420 3.89% 297
NW_021162009.1 21630 24.81% 1780
NW_021162025.1 3760 4.22% 318
NW_021162035.1 2970 3.18% 264
NW_021162047.1 2270 2.37% 210
NW_021162055.1 7550 7.59% 633
NW_021162083.1 6770 3.93% 623
NW_021162091.1 10340 9.12% 846
NW_021162100.1 10420 8.29% 902
NW_021162108.1 11120 34.89% 892
NW_021162157.1 1040 1.73% 93
NW_021162208.1 950 0.38% 90
NW_021162222.1 1690 4.46% 157
NW_021162226.1 1290 2.96% 118
NW_021162246.1 20740 19.63% 1721
NW_021162251.1 12830 17.96% 1069
NW_021162253.1 80 0.26% 7
NW_021162263.1 530 2.00% 49
NW_021162265.1 7710 19.95% 628
NW_021162274.1 26050 25.65% 2166
NW_021162277.1 2280 9.17% 191
NW_021162460.1 60 0.80% 4
NW_021162463.1 180 2.38% 15
NW_021162495.1 400 6.07% 33
NW_021162553.1 300 3.46% 27
NW_021162593.1 90 0.97% 9
NW_021162599.1 3460 36.91% 276
NW_021162621.1 270 2.76% 24
NW_021162643.1 5980 23.53% 507
NW_021162814.1 340 2.74% 31
NW_021162871.1 800 5.76% 69
NW_021162949.1 20 0.13% 2
NW_021163002.1 40 0.25% 2
2539 contigs with no values (90260089 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84135352 5 150 12.23 10
global segment-length histogram

Files

Filename Size md5
STR_SST-RSPO2_GABA.bw 561.22 MB 3fc78f99f981560f28364471c8d6b57c
genomic_resource.yaml 1.13 KB 6d4304e07bee11f19f9ef2b367e81aec
statistics/