Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STR_TAC3-PLPP4_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STR_TAC3-PLPP4_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STR_TAC3-PLPP4_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STR_TAC3-PLPP4_GABA float

johansen2025Crossspecies_atac_macaque_STR_TAC3-PLPP4_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STR_TAC3-PLPP4_GABA [0.0251, 66.3]
n
1,698,166,525
mean
0.115
sd
0.293

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 169816652557.15% 144542288
NC_005943.1 2080 12.56% 198
NC_027914.1 2881220 24.51% 238689
NC_041754.1 143274690 64.07% 12293064
NC_041755.1 116619690 59.44% 9863380
NC_041756.1 112536060 60.74% 9568533
NC_041757.1 98695260 58.07% 8312169
NC_041758.1 96527800 51.53% 8046957
NC_041759.1 101697990 56.79% 8556838
NC_041760.1 109116390 64.24% 9341194
NC_041761.1 83688930 57.45% 7051539
NC_041762.1 82584740 61.57% 7032957
NC_041763.1 70715810 71.06% 6185312
NC_041764.1 79925370 60.06% 6803746
NC_041765.1 76655206 58.95% 6461700
NC_041766.1 67254980 61.85% 5729335
NC_041767.1 81265250 63.46% 6992142
NC_041768.1 69611060 61.45% 5936643
NC_041769.1 56729534 71.24% 4991426
NC_041770.1 51827530 54.31% 4358322
NC_041771.1 43414100 58.29% 3656911
NC_041772.1 38183830 65.48% 3384008
NC_041773.1 53137215 68.89% 4616056
NC_041774.1 57550510 37.52% 4760593
NW_021160097.1 850 2.29% 77
NW_021160098.1 3460 8.65% 295
NW_021160099.1 1920 4.75% 168
NW_021160102.1 5340 10.64% 450
NW_021160105.1 3630 6.62% 322
NW_021160106.1 7830 14.10% 656
NW_021160107.1 3860 6.94% 344
NW_021160109.1 10560 12.83% 874
NW_021160110.1 27870 23.59% 2332
NW_021160111.1 27130 20.39% 2242
NW_021160113.1 65940 56.68% 5883
NW_021160114.1 16230 24.62% 1389
NW_021160116.1 1650 4.66% 136
NW_021160121.1 5250 6.09% 446
NW_021160122.1 11480 12.47% 968
NW_021160123.1 7850 14.83% 655
NW_021160125.1 400 1.58% 38
NW_021160136.1 7680 12.86% 649
NW_021160140.1 20890 16.04% 1739
NW_021160141.1 20200 15.06% 1666
NW_021160142.1 25790 53.94% 2135
NW_021160144.1 216049 17.57% 18377
NW_021160145.1 2690 10.01% 221
NW_021160147.1 3480 11.59% 274
NW_021160148.1 8320 24.24% 710
NW_021160150.1 4150 11.07% 361
NW_021160155.1 6010 11.02% 529
NW_021160158.1 9120 12.10% 775
NW_021160159.1 12100 14.10% 1007
NW_021160161.1 131290 17.78% 10854
NW_021160167.1 1360 3.59% 127
NW_021160168.1 810 1.94% 67
NW_021160175.1 96510 52.13% 8011
NW_021160179.1 2580 6.64% 218
NW_021160182.1 14570 25.08% 1241
NW_021160184.1 3310 5.40% 280
NW_021160185.1 4540 7.31% 405
NW_021160186.1 16720 25.93% 1393
NW_021160187.1 4920 6.44% 428
NW_021160188.1 7630 9.20% 657
NW_021160189.1 9440 9.32% 788
NW_021160190.1 5720 16.01% 477
NW_021160191.1 4260 15.29% 358
NW_021160193.1 600 1.93% 54
NW_021160196.1 16780 36.40% 1402
NW_021160197.1 8060 15.56% 686
NW_021160199.1 8480 15.16% 702
NW_021160200.1 7690 13.03% 638
NW_021160201.1 19280 31.38% 1650
NW_021160202.1 4690 7.16% 384
NW_021160203.1 16500 22.85% 1383
NW_021160204.1 13570 18.63% 1149
NW_021160205.1 10410 14.21% 892
NW_021160206.1 10810 12.91% 910
NW_021160207.1 14830 15.01% 1264
NW_021160209.1 38550 5.75% 3277
NW_021160211.1 10280 7.71% 877
NW_021160220.1 18440 27.64% 1569
NW_021160221.1 8250 11.64% 698
NW_021160222.1 3000 3.93% 261
NW_021160223.1 24240 29.09% 2105
NW_021160225.1 10130 18.82% 860
NW_021160226.1 5590 15.51% 489
NW_021160228.1 5170 10.81% 445
NW_021160229.1 5190 10.82% 423
NW_021160231.1 3920 7.19% 331
NW_021160233.1 6630 10.26% 555
NW_021160234.1 23220 35.43% 2094
NW_021160236.1 8660 11.13% 728
NW_021160237.1 22220 25.92% 1859
NW_021160238.1 20520 19.65% 1740
NW_021160239.1 3260 11.18% 279
NW_021160242.1 4100 13.87% 348
NW_021160243.1 1760 5.58% 146
NW_021160244.1 23680 67.23% 2222
NW_021160245.1 5630 12.87% 447
NW_021160248.1 4160 5.57% 360
NW_021160249.1 12330 16.29% 1031
NW_021160250.1 3510 5.46% 298
NW_021160251.1 20260 24.00% 1679
NW_021160252.1 25290 28.53% 2127
NW_021160255.1 4690 16.70% 407
NW_021160263.1 2350 4.47% 199
NW_021160266.1 2670 3.56% 234
NW_021160268.1 3180 4.70% 281
NW_021160270.1 5360 15.39% 459
NW_021160271.1 3400 9.78% 298
NW_021160272.1 5670 16.20% 500
NW_021160273.1 2380 5.92% 203
NW_021160277.1 1100 2.45% 96
NW_021160278.1 12480 22.43% 1035
NW_021160279.1 12340 18.70% 1018
NW_021160282.1 27260 22.03% 2307
NW_021160284.1 3390 9.74% 285
NW_021160285.1 6620 14.84% 555
NW_021160291.1 960 2.12% 83
NW_021160293.1 12570 23.79% 1071
NW_021160294.1 16870 21.19% 1458
NW_021160295.1 9230 11.18% 783
NW_021160297.1 9970 17.73% 851
NW_021160298.1 5230 19.20% 439
NW_021160300.1 16060 25.79% 1401
NW_021160305.1 3220 7.99% 262
NW_021160306.1 6290 15.94% 525
NW_021160307.1 12430 23.59% 1013
NW_021160308.1 6700 12.42% 562
NW_021160310.1 21590 37.06% 1890
NW_021160311.1 24300 30.86% 2049
NW_021160312.1 18990 21.48% 1615
NW_021160313.1 18810 19.88% 1595
NW_021160319.1 10470 24.10% 876
NW_021160320.1 8890 16.92% 742
NW_021160324.1 11850 18.63% 994
NW_021160325.1 11710 17.97% 955
NW_021160326.1 6880 10.56% 576
NW_021160327.1 11780 17.85% 1008
NW_021160328.1 18780 29.66% 1651
NW_021160329.1 10600 19.74% 903
NW_021160338.1 3180 8.47% 271
NW_021160339.1 1440 3.74% 127
NW_021160341.1 6790 14.66% 568
NW_021160347.1 29450 17.82% 2466
NW_021160353.1 7420 18.02% 606
NW_021160354.1 3600 8.58% 306
NW_021160355.1 6230 11.21% 545
NW_021160356.1 6400 8.39% 534
NW_021160357.1 1530 5.02% 124
NW_021160358.1 8600 21.80% 705
NW_021160359.1 10210 24.87% 864
NW_021160361.1 2500 5.31% 208
NW_021160362.1 4230 7.88% 363
NW_021160363.1 12690 20.83% 1017
NW_021160364.1 10200 16.50% 863
NW_021160365.1 11800 17.76% 998
NW_021160366.1 13430 18.85% 1138
NW_021160367.1 24170 31.64% 2060
NW_021160368.1 3950 5.00% 340
NW_021160369.1 3820 4.67% 339
NW_021160370.1 18150 20.28% 1517
NW_021160371.1 5960 6.59% 515
NW_021160372.1 33760 25.11% 2836
NW_021160373.1 17800 30.61% 1505
NW_021160374.1 13180 10.60% 1138
NW_021160375.1 32240 17.54% 2647
NW_021160376.1 122260 14.17% 10045
NW_021160381.1 1260 2.59% 105
NW_021160383.1 22027 31.92% 1841
NW_021160384.1 4740 5.95% 405
NW_021160401.1 1820 11.18% 158
NW_021160410.1 7900 48.01% 685
NW_021160417.1 3240 5.72% 270
NW_021160452.1 2140 12.64% 187
NW_021160482.1 710 4.11% 61
NW_021160484.1 3670 21.09% 299
NW_021160495.1 142480 17.29% 11874
NW_021160514.1 3330 18.48% 274
NW_021160523.1 1340 7.41% 112
NW_021160525.1 2050 11.30% 165
NW_021160535.1 3300 18.01% 278
NW_021160549.1 2890 15.57% 257
NW_021160573.1 5300 27.84% 446
NW_021160589.1 60 0.31% 6
NW_021160606.1 98210 9.76% 8215
NW_021160623.1 1580 7.99% 137
NW_021160625.1 300 1.52% 28
NW_021160629.1 450 2.26% 37
NW_021160635.1 710 3.53% 62
NW_021160655.1 4710 22.89% 383
NW_021160656.1 2190 10.70% 180
NW_021160678.1 730 3.51% 62
NW_021160682.1 13275 64.05% 1192
NW_021160688.1 5850 28.65% 510
NW_021160701.1 6710 31.63% 586
NW_021160725.1 1460 6.74% 118
NW_021160726.1 13440 61.80% 1238
NW_021160734.1 1090 5.01% 91
NW_021160737.1 20 0.09% 2
NW_021160757.1 80 0.36% 8
NW_021160770.1 12990 57.40% 1205
NW_021160772.1 3340 14.73% 278
NW_021160805.1 7330 31.26% 605
NW_021160821.1 650 2.72% 56
NW_021160827.1 59360 8.09% 5110
NW_021160832.1 710 2.95% 60
NW_021160834.1 2730 11.32% 219
NW_021160848.1 210 0.86% 21
NW_021160868.1 200 0.82% 16
NW_021160890.1 2550 10.10% 221
NW_021160903.1 6616 24.98% 533
NW_021160919.1 2650 10.17% 219
NW_021160925.1 770 2.95% 68
NW_021160946.1 4310 16.28% 366
NW_021160955.1 2800 10.55% 241
NW_021160961.1 2000 7.47% 178
NW_021160976.1 8550 31.41% 721
NW_021160983.1 160 0.59% 14
NW_021160986.1 100 0.37% 10
NW_021161026.1 180 0.65% 15
NW_021161033.1 120 0.42% 12
NW_021161038.1 3700 13.67% 324
NW_021161041.1 1590 5.58% 142
NW_021161043.1 1030 3.53% 94
NW_021161046.1 4720 16.00% 410
NW_021161062.1 1440 4.86% 118
NW_021161066.1 8960 30.03% 735
NW_021161106.1 5830 19.02% 479
NW_021161107.1 1100 3.58% 90
NW_021161113.1 5350 15.86% 463
NW_021161114.1 5660 18.35% 501
NW_021161131.1 170 0.54% 16
NW_021161133.1 6990 4.70% 617
NW_021161138.1 440 1.41% 37
NW_021161152.1 4900 15.57% 404
NW_021161164.1 3190 9.87% 289
NW_021161166.1 7330 22.56% 591
NW_021161184.1 1150 3.89% 100
NW_021161201.1 2500 7.53% 209
NW_021161211.1 5140 15.40% 435
NW_021161213.1 700 2.10% 63
NW_021161224.1 8490 25.19% 717
NW_021161226.1 4020 12.06% 350
NW_021161241.1 670 1.95% 61
NW_021161247.1 50 0.15% 5
NW_021161253.1 180 0.52% 15
NW_021161261.1 2380 6.81% 192
NW_021161269.1 10500 29.92% 882
NW_021161274.1 30 0.09% 3
NW_021161282.1 18090 46.53% 1597
NW_021161303.1 1630 4.53% 140
NW_021161305.1 790 2.19% 70
NW_021161307.1 1440 5.43% 131
NW_021161312.1 380 1.06% 36
NW_021161320.1 7490 7.62% 617
NW_021161336.1 4600 12.48% 387
NW_021161338.1 1420 3.82% 126
NW_021161340.1 3910 10.64% 336
NW_021161348.1 5350 14.29% 427
NW_021161355.1 7950 20.58% 661
NW_021161360.1 830 2.22% 73
NW_021161364.1 3110 8.14% 269
NW_021161377.1 14610 36.75% 1240
NW_021161379.1 380 0.99% 38
NW_021161380.1 210 0.66% 19
NW_021161385.1 1070 2.75% 94
NW_021161392.1 10950 27.99% 960
NW_021161394.1 4960 12.77% 414
NW_021161396.1 200 0.51% 20
NW_021161399.1 3910 17.84% 316
NW_021161404.1 1780 4.51% 153
NW_021161413.1 4660 11.77% 392
NW_021161421.1 540 1.36% 46
NW_021161422.1 590 1.49% 53
NW_021161427.1 3350 8.36% 289
NW_021161433.1 850 2.10% 76
NW_021161437.1 1070 3.56% 100
NW_021161446.1 1810 4.42% 160
NW_021161463.1 130 0.31% 13
NW_021161468.1 2780 6.63% 236
NW_021161470.1 870 2.08% 77
NW_021161483.1 80 0.19% 6
NW_021161486.1 7720 18.14% 663
NW_021161494.1 800 1.87% 71
NW_021161497.1 870 2.03% 71
NW_021161505.1 6730 15.62% 579
NW_021161507.1 5250 12.13% 421
NW_021161508.1 16234 37.62% 1339
NW_021161519.1 7900 18.01% 655
NW_021161520.1 5280 12.25% 485
NW_021161523.1 3690 8.53% 308
NW_021161525.1 15910 36.14% 1353
NW_021161526.1 6010 13.64% 514
NW_021161532.1 1790 4.03% 153
NW_021161535.1 2650 5.93% 216
NW_021161537.1 12215 27.54% 1052
NW_021161545.1 12499 27.98% 1095
NW_021161552.1 1060 2.49% 94
NW_021161554.1 3610 7.99% 305
NW_021161561.1 7970 17.64% 670
NW_021161562.1 10480 23.05% 891
NW_021161567.1 2920 6.41% 242
NW_021161570.1 150 0.33% 15
NW_021161582.1 11410 24.84% 945
NW_021161585.1 13850 30.05% 1176
NW_021161590.1 19420 42.21% 1619
NW_021161593.1 17620 37.86% 1474
NW_021161596.1 58740 10.89% 4994
NW_021161601.1 4030 8.57% 338
NW_021161608.1 2000 4.28% 172
NW_021161609.1 810 1.72% 65
NW_021161614.1 3750 7.86% 314
NW_021161616.1 6470 13.52% 557
NW_021161617.1 500 1.04% 48
NW_021161627.1 8010 23.96% 671
NW_021161633.1 25040 50.67% 2099
NW_021161642.1 5460 10.97% 460
NW_021161648.1 21720 42.69% 1912
NW_021161679.1 10060 19.30% 860
NW_021161680.1 4240 8.19% 357
NW_021161686.1 22100 16.34% 1887
NW_021161694.1 1720 3.78% 148
NW_021161695.1 4590 8.59% 400
NW_021161696.1 2740 5.17% 238
NW_021161699.1 8404 17.38% 691
NW_021161700.1 310 0.58% 28
NW_021161713.1 1550 2.88% 138
NW_021161715.1 700 1.29% 65
NW_021161718.1 14620 26.83% 1221
NW_021161725.1 4440 14.11% 381
NW_021161737.1 5650 10.12% 468
NW_021161743.1 1770 3.16% 153
NW_021161747.1 520 0.92% 47
NW_021161754.1 24360 42.59% 2118
NW_021161759.1 1240 2.16% 113
NW_021161767.1 8770 8.59% 756
NW_021161769.1 7290 12.57% 604
NW_021161772.1 6610 8.94% 546
NW_021161784.1 2060 40.02% 164
NW_021161790.1 19400 32.15% 1628
NW_021161794.1 2450 4.05% 211
NW_021161796.1 2960 4.90% 248
NW_021161798.1 6500 13.81% 563
NW_021161830.1 5840 13.05% 494
NW_021161832.1 2080 3.28% 183
NW_021161839.1 2140 3.34% 186
NW_021161842.1 4500 6.90% 390
NW_021161843.1 3560 5.47% 291
NW_021161845.1 22040 33.70% 1880
NW_021161850.1 398071 35.63% 32732
NW_021161853.1 10880 16.49% 920
NW_021161857.1 8760 13.20% 740
NW_021161862.1 5300 8.01% 444
NW_021161876.1 14740 21.59% 1199
NW_021161878.1 8230 12.10% 689
NW_021161881.1 15890 26.38% 1332
NW_021161888.1 12390 17.85% 1056
NW_021161902.1 14620 22.56% 1246
NW_021161927.1 8140 10.88% 674
NW_021161934.1 11170 14.83% 929
NW_021161939.1 20760 27.41% 1781
NW_021161954.1 6230 8.08% 526
NW_021161955.1 8790 11.34% 725
NW_021161956.1 14610 19.13% 1232
NW_021161958.1 27590 35.13% 2268
NW_021161961.1 16200 20.72% 1360
NW_021161962.1 1780 2.23% 150
NW_021161965.1 9440 11.94% 789
NW_021161996.1 6690 7.78% 540
NW_021162004.1 2310 8.14% 198
NW_021162007.1 7120 8.10% 602
NW_021162009.1 38140 43.75% 3336
NW_021162025.1 6620 7.43% 576
NW_021162035.1 5070 5.43% 429
NW_021162047.1 8190 8.56% 686
NW_021162055.1 13710 13.78% 1166
NW_021162083.1 18470 10.72% 1572
NW_021162091.1 16700 14.73% 1403
NW_021162100.1 15160 12.06% 1334
NW_021162108.1 16360 51.33% 1390
NW_021162157.1 1960 3.25% 173
NW_021162185.1 40 0.45% 4
NW_021162208.1 3940 1.58% 358
NW_021162222.1 6280 16.59% 524
NW_021162226.1 3070 7.03% 264
NW_021162246.1 60260 57.04% 5099
NW_021162251.1 37360 52.31% 3149
NW_021162253.1 330 1.05% 33
NW_021162263.1 1090 4.11% 102
NW_021162265.1 14770 38.21% 1232
NW_021162274.1 52350 51.56% 4437
NW_021162277.1 4990 20.06% 425
NW_021162460.1 60 0.80% 6
NW_021162463.1 520 6.89% 44
NW_021162495.1 580 8.80% 49
NW_021162553.1 790 9.12% 63
NW_021162593.1 380 4.09% 31
NW_021162599.1 4800 51.20% 399
NW_021162621.1 1050 10.75% 79
NW_021162643.1 9160 36.04% 775
NW_021162814.1 1430 11.53% 115
NW_021162871.1 1440 10.37% 118
NW_021162949.1 70 0.47% 6
NW_021163002.1 120 0.76% 12
2534 contigs with no values (90136061 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 144542288 1 140 11.75 10
global segment-length histogram

Files

Filename Size md5
STR_TAC3-PLPP4_GABA.bw 841.6 MB 6a4345339da5b9d2ea929b1deddef8b0
genomic_resource.yaml 1.14 KB 0fe7d7b7da0af0c9e18897aeb0cbd47a
statistics/