Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STRd_Cholinergic_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRd_Cholinergic_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRd_Cholinergic_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STRd_Cholinergic_GABA float

johansen2025Crossspecies_atac_macaque_STRd_Cholinergic_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STRd_Cholinergic_GABA [0.174, 89.5]
n
813,446,384
mean
0.323
sd
0.41

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 81344638427.38% 66898331
NC_005943.1 1710 10.32% 159
NC_027914.1 713650 6.07% 64030
NC_041754.1 70886690 31.70% 5805640
NC_041755.1 56070740 28.58% 4610313
NC_041756.1 54519480 29.42% 4477571
NC_041757.1 45937720 27.03% 3792125
NC_041758.1 44826660 23.93% 3728304
NC_041759.1 47328690 26.43% 3912779
NC_041760.1 52726740 31.04% 4320645
NC_041761.1 40237190 27.62% 3313740
NC_041762.1 39567540 29.50% 3246142
NC_041763.1 35486670 35.66% 2880495
NC_041764.1 39149370 29.42% 3214620
NC_041765.1 35938456 27.64% 2960885
NC_041766.1 32278660 29.69% 2648632
NC_041767.1 40156680 31.36% 3290979
NC_041768.1 33098430 29.22% 2717528
NC_041769.1 29503630 37.05% 2396816
NC_041770.1 23645940 24.78% 1955784
NC_041771.1 19962980 26.81% 1647065
NC_041772.1 20268020 34.76% 1647531
NC_041773.1 26351445 34.16% 2147661
NC_041774.1 23112120 15.07% 1975069
NW_021160097.1 210 0.57% 19
NW_021160098.1 1100 2.75% 102
NW_021160099.1 530 1.31% 50
NW_021160102.1 1980 3.95% 182
NW_021160105.1 1500 2.73% 130
NW_021160106.1 2820 5.08% 239
NW_021160107.1 1230 2.21% 117
NW_021160109.1 4250 5.16% 376
NW_021160110.1 9850 8.34% 844
NW_021160111.1 11080 8.33% 980
NW_021160113.1 34190 29.39% 2846
NW_021160114.1 5060 7.68% 418
NW_021160116.1 440 1.24% 42
NW_021160121.1 1900 2.20% 170
NW_021160122.1 3630 3.94% 341
NW_021160123.1 2340 4.42% 199
NW_021160125.1 160 0.63% 15
NW_021160136.1 2270 3.80% 192
NW_021160140.1 5180 3.98% 458
NW_021160141.1 5180 3.86% 459
NW_021160142.1 10340 21.63% 818
NW_021160144.1 69700 5.67% 6373
NW_021160145.1 620 2.31% 60
NW_021160147.1 920 3.06% 87
NW_021160148.1 3720 10.84% 287
NW_021160150.1 2010 5.36% 174
NW_021160155.1 2280 4.18% 194
NW_021160158.1 1890 2.51% 165
NW_021160159.1 5310 6.19% 455
NW_021160161.1 61882 8.38% 5269
NW_021160167.1 840 2.22% 79
NW_021160168.1 570 1.37% 52
NW_021160175.1 37920 20.48% 3155
NW_021160179.1 990 2.55% 81
NW_021160182.1 4490 7.73% 374
NW_021160184.1 1680 2.74% 138
NW_021160185.1 1070 1.72% 99
NW_021160186.1 4720 7.32% 408
NW_021160187.1 1190 1.56% 109
NW_021160188.1 3050 3.68% 272
NW_021160189.1 4690 4.63% 397
NW_021160190.1 3380 9.46% 276
NW_021160191.1 1170 4.20% 106
NW_021160193.1 410 1.32% 36
NW_021160196.1 6620 14.36% 531
NW_021160197.1 2170 4.19% 186
NW_021160199.1 1900 3.40% 177
NW_021160200.1 1420 2.41% 127
NW_021160201.1 7140 11.62% 590
NW_021160202.1 1280 1.95% 115
NW_021160203.1 4890 6.77% 420
NW_021160204.1 3990 5.48% 357
NW_021160205.1 2460 3.36% 223
NW_021160206.1 2500 2.98% 218
NW_021160207.1 3410 3.45% 300
NW_021160209.1 12100 1.81% 1046
NW_021160211.1 5130 3.85% 445
NW_021160220.1 5430 8.14% 452
NW_021160221.1 2920 4.12% 257
NW_021160222.1 1140 1.49% 105
NW_021160223.1 11130 13.36% 939
NW_021160225.1 5350 9.94% 462
NW_021160226.1 1760 4.88% 160
NW_021160228.1 1480 3.09% 139
NW_021160229.1 1900 3.96% 174
NW_021160231.1 1790 3.28% 159
NW_021160233.1 2320 3.59% 196
NW_021160234.1 11350 17.32% 952
NW_021160236.1 4210 5.41% 374
NW_021160237.1 16270 18.98% 1352
NW_021160238.1 10330 9.89% 882
NW_021160239.1 1290 4.42% 112
NW_021160242.1 850 2.88% 79
NW_021160243.1 410 1.30% 34
NW_021160244.1 15580 44.24% 1301
NW_021160245.1 1030 2.35% 90
NW_021160248.1 1230 1.65% 108
NW_021160249.1 3510 4.64% 280
NW_021160250.1 1320 2.05% 112
NW_021160251.1 4710 5.58% 419
NW_021160252.1 6190 6.98% 527
NW_021160255.1 1560 5.56% 131
NW_021160263.1 1330 2.53% 118
NW_021160266.1 1190 1.59% 110
NW_021160268.1 1470 2.17% 135
NW_021160270.1 2270 6.52% 195
NW_021160271.1 1110 3.19% 98
NW_021160272.1 3590 10.26% 296
NW_021160273.1 1080 2.69% 101
NW_021160277.1 290 0.65% 27
NW_021160278.1 2720 4.89% 239
NW_021160279.1 3180 4.82% 266
NW_021160282.1 8250 6.67% 699
NW_021160284.1 570 1.64% 49
NW_021160285.1 2110 4.73% 182
NW_021160291.1 570 1.26% 55
NW_021160293.1 3910 7.40% 343
NW_021160294.1 5080 6.38% 444
NW_021160295.1 2340 2.83% 214
NW_021160297.1 2730 4.86% 246
NW_021160298.1 1780 6.53% 157
NW_021160300.1 5110 8.21% 429
NW_021160305.1 390 0.97% 37
NW_021160306.1 1530 3.88% 135
NW_021160307.1 2770 5.26% 253
NW_021160308.1 2680 4.97% 240
NW_021160310.1 15360 26.36% 1278
NW_021160311.1 6380 8.10% 559
NW_021160312.1 5930 6.71% 522
NW_021160313.1 3920 4.14% 344
NW_021160319.1 2190 5.04% 188
NW_021160320.1 2550 4.85% 230
NW_021160324.1 5290 8.32% 434
NW_021160325.1 3820 5.86% 327
NW_021160326.1 2340 3.59% 216
NW_021160327.1 3520 5.34% 309
NW_021160328.1 8200 12.95% 689
NW_021160329.1 4040 7.52% 338
NW_021160338.1 690 1.84% 66
NW_021160339.1 420 1.09% 41
NW_021160341.1 2530 5.46% 222
NW_021160347.1 8370 5.06% 760
NW_021160353.1 2750 6.68% 239
NW_021160354.1 860 2.05% 77
NW_021160355.1 2120 3.82% 194
NW_021160356.1 2240 2.94% 200
NW_021160357.1 780 2.56% 71
NW_021160358.1 2450 6.21% 215
NW_021160359.1 3160 7.70% 267
NW_021160361.1 710 1.51% 69
NW_021160362.1 1010 1.88% 91
NW_021160363.1 2880 4.73% 252
NW_021160364.1 4190 6.78% 349
NW_021160365.1 3130 4.71% 268
NW_021160366.1 3810 5.35% 333
NW_021160367.1 8360 10.94% 709
NW_021160368.1 1180 1.49% 113
NW_021160369.1 1850 2.26% 174
NW_021160370.1 4640 5.18% 400
NW_021160371.1 1810 2.00% 170
NW_021160372.1 9230 6.87% 823
NW_021160373.1 6400 11.01% 526
NW_021160374.1 7760 6.24% 684
NW_021160375.1 15560 8.46% 1322
NW_021160376.1 62210 7.21% 5382
NW_021160381.1 350 0.72% 34
NW_021160383.1 12730 18.45% 1081
NW_021160384.1 1070 1.34% 101
NW_021160401.1 660 4.06% 59
NW_021160410.1 5070 30.81% 421
NW_021160417.1 1220 2.16% 105
NW_021160452.1 1220 7.21% 101
NW_021160482.1 140 0.81% 14
NW_021160484.1 880 5.06% 79
NW_021160495.1 57550 6.99% 5045
NW_021160514.1 890 4.94% 79
NW_021160523.1 320 1.77% 26
NW_021160525.1 930 5.13% 82
NW_021160535.1 1310 7.15% 108
NW_021160549.1 1190 6.41% 100
NW_021160573.1 2630 13.82% 216
NW_021160589.1 60 0.31% 6
NW_021160606.1 36660 3.64% 3236
NW_021160623.1 300 1.52% 26
NW_021160625.1 60 0.30% 6
NW_021160629.1 120 0.60% 11
NW_021160635.1 130 0.65% 12
NW_021160655.1 1720 8.36% 143
NW_021160656.1 910 4.45% 79
NW_021160678.1 100 0.48% 10
NW_021160682.1 5770 27.84% 481
NW_021160688.1 2220 10.87% 189
NW_021160701.1 4270 20.13% 375
NW_021160725.1 90 0.42% 8
NW_021160726.1 11420 52.51% 1008
NW_021160734.1 300 1.38% 25
NW_021160757.1 40 0.18% 4
NW_021160770.1 10540 46.57% 939
NW_021160772.1 800 3.53% 71
NW_021160805.1 3540 15.10% 298
NW_021160821.1 190 0.79% 18
NW_021160827.1 29060 3.96% 2439
NW_021160832.1 100 0.42% 10
NW_021160834.1 520 2.16% 50
NW_021160835.1 20 0.12% 2
NW_021160848.1 160 0.66% 13
NW_021160868.1 20 0.08% 2
NW_021160890.1 1140 4.52% 100
NW_021160903.1 3110 11.74% 252
NW_021160919.1 580 2.23% 45
NW_021160925.1 270 1.04% 24
NW_021160946.1 1230 4.65% 111
NW_021160955.1 770 2.90% 72
NW_021160961.1 960 3.59% 92
NW_021160976.1 2690 9.88% 234
NW_021160983.1 90 0.33% 9
NW_021161026.1 40 0.14% 4
NW_021161033.1 20 0.07% 2
NW_021161038.1 880 3.25% 71
NW_021161041.1 660 2.32% 63
NW_021161043.1 270 0.93% 24
NW_021161046.1 2150 7.29% 191
NW_021161062.1 180 0.61% 18
NW_021161066.1 3120 10.46% 271
NW_021161106.1 2660 8.68% 216
NW_021161107.1 540 1.76% 43
NW_021161113.1 3380 10.02% 304
NW_021161114.1 3640 11.80% 312
NW_021161131.1 80 0.26% 8
NW_021161133.1 1890 1.27% 164
NW_021161138.1 60 0.19% 6
NW_021161152.1 1330 4.23% 114
NW_021161164.1 1950 6.03% 167
NW_021161166.1 2520 7.75% 226
NW_021161184.1 310 1.05% 29
NW_021161201.1 840 2.53% 71
NW_021161211.1 760 2.28% 70
NW_021161213.1 340 1.02% 34
NW_021161224.1 3550 10.53% 275
NW_021161226.1 3040 9.12% 249
NW_021161241.1 420 1.22% 38
NW_021161247.1 40 0.12% 4
NW_021161253.1 110 0.32% 9
NW_021161261.1 620 1.77% 58
NW_021161269.1 3610 10.29% 304
NW_021161282.1 9880 25.41% 820
NW_021161303.1 220 0.61% 22
NW_021161305.1 290 0.80% 24
NW_021161307.1 570 2.15% 49
NW_021161312.1 60 0.17% 6
NW_021161320.1 4110 4.18% 335
NW_021161336.1 2310 6.27% 206
NW_021161338.1 610 1.64% 55
NW_021161340.1 750 2.04% 65
NW_021161348.1 2070 5.53% 179
NW_021161355.1 2320 6.00% 195
NW_021161360.1 340 0.91% 31
NW_021161364.1 1240 3.25% 107
NW_021161377.1 6550 16.47% 555
NW_021161379.1 70 0.18% 7
NW_021161380.1 80 0.25% 7
NW_021161385.1 190 0.49% 14
NW_021161392.1 5270 13.47% 472
NW_021161394.1 1520 3.91% 129
NW_021161396.1 170 0.43% 17
NW_021161399.1 1130 5.15% 87
NW_021161404.1 360 0.91% 36
NW_021161413.1 940 2.37% 85
NW_021161421.1 360 0.90% 34
NW_021161422.1 300 0.76% 28
NW_021161427.1 1030 2.57% 93
NW_021161433.1 160 0.40% 13
NW_021161437.1 430 1.43% 39
NW_021161446.1 530 1.30% 50
NW_021161463.1 20 0.05% 2
NW_021161468.1 970 2.31% 89
NW_021161470.1 230 0.55% 22
NW_021161483.1 20 0.05% 2
NW_021161486.1 3750 8.81% 310
NW_021161494.1 460 1.07% 44
NW_021161497.1 300 0.70% 26
NW_021161505.1 3290 7.63% 279
NW_021161507.1 3250 7.51% 286
NW_021161508.1 6650 15.41% 556
NW_021161519.1 1770 4.04% 162
NW_021161520.1 2200 5.10% 197
NW_021161523.1 1280 2.96% 113
NW_021161525.1 4600 10.45% 383
NW_021161526.1 3440 7.81% 290
NW_021161532.1 490 1.10% 42
NW_021161535.1 480 1.07% 46
NW_021161537.1 7240 16.32% 605
NW_021161545.1 8380 18.76% 693
NW_021161552.1 360 0.85% 31
NW_021161554.1 1110 2.46% 106
NW_021161561.1 4120 9.12% 345
NW_021161562.1 4790 10.53% 398
NW_021161567.1 680 1.49% 64
NW_021161570.1 90 0.20% 9
NW_021161582.1 5540 12.06% 462
NW_021161585.1 5530 12.00% 463
NW_021161590.1 10690 23.23% 866
NW_021161593.1 7560 16.25% 653
NW_021161596.1 25540 4.74% 2162
NW_021161601.1 2690 5.72% 237
NW_021161608.1 550 1.18% 52
NW_021161609.1 370 0.79% 33
NW_021161614.1 680 1.43% 59
NW_021161616.1 3880 8.11% 346
NW_021161617.1 140 0.29% 14
NW_021161627.1 2060 6.16% 171
NW_021161633.1 9180 18.58% 761
NW_021161642.1 2030 4.08% 181
NW_021161648.1 12280 24.13% 1047
NW_021161679.1 2820 5.41% 232
NW_021161680.1 1010 1.95% 89
NW_021161686.1 9850 7.28% 833
NW_021161694.1 740 1.63% 67
NW_021161695.1 1440 2.69% 136
NW_021161696.1 1000 1.89% 91
NW_021161699.1 3720 7.69% 316
NW_021161700.1 150 0.28% 13
NW_021161713.1 420 0.78% 39
NW_021161715.1 230 0.42% 22
NW_021161718.1 5680 10.43% 463
NW_021161725.1 1730 5.50% 151
NW_021161737.1 1440 2.58% 127
NW_021161743.1 1110 1.98% 100
NW_021161747.1 150 0.27% 14
NW_021161754.1 8960 15.67% 749
NW_021161759.1 280 0.49% 26
NW_021161767.1 3470 3.40% 295
NW_021161769.1 1240 2.14% 112
NW_021161772.1 1430 1.93% 125
NW_021161784.1 530 10.30% 43
NW_021161790.1 8170 13.54% 678
NW_021161794.1 360 0.60% 32
NW_021161796.1 520 0.86% 48
NW_021161798.1 2530 5.37% 211
NW_021161830.1 3050 6.82% 277
NW_021161832.1 1150 1.81% 98
NW_021161839.1 700 1.09% 65
NW_021161842.1 2140 3.28% 196
NW_021161843.1 1380 2.12% 125
NW_021161845.1 9150 13.99% 772
NW_021161850.1 160381 14.35% 13541
NW_021161853.1 4930 7.47% 406
NW_021161857.1 4380 6.60% 381
NW_021161862.1 1060 1.60% 102
NW_021161876.1 5370 7.86% 480
NW_021161878.1 4880 7.18% 406
NW_021161881.1 4880 8.10% 419
NW_021161888.1 6930 9.98% 576
NW_021161902.1 5610 8.66% 477
NW_021161927.1 2230 2.98% 204
NW_021161934.1 4290 5.70% 377
NW_021161939.1 8700 11.49% 741
NW_021161954.1 3370 4.37% 285
NW_021161955.1 2470 3.19% 216
NW_021161956.1 6500 8.51% 560
NW_021161958.1 8090 10.30% 681
NW_021161961.1 4040 5.17% 350
NW_021161962.1 810 1.01% 71
NW_021161965.1 2450 3.10% 210
NW_021161996.1 1940 2.26% 162
NW_021162004.1 590 2.08% 47
NW_021162007.1 2670 3.04% 241
NW_021162009.1 18170 20.84% 1475
NW_021162025.1 3670 4.12% 312
NW_021162035.1 1030 1.10% 98
NW_021162047.1 1860 1.94% 170
NW_021162055.1 6370 6.40% 549
NW_021162083.1 7030 4.08% 622
NW_021162091.1 8900 7.85% 712
NW_021162100.1 8680 6.91% 736
NW_021162108.1 8770 27.52% 704
NW_021162157.1 1050 1.74% 94
NW_021162185.1 20 0.23% 2
NW_021162208.1 610 0.25% 60
NW_021162222.1 1710 4.52% 164
NW_021162226.1 970 2.22% 89
NW_021162246.1 20330 19.24% 1689
NW_021162251.1 14330 20.06% 1174
NW_021162253.1 130 0.42% 13
NW_021162263.1 330 1.25% 29
NW_021162265.1 6350 16.43% 530
NW_021162274.1 20420 20.11% 1704
NW_021162277.1 1260 5.07% 108
NW_021162463.1 490 6.49% 43
NW_021162495.1 390 5.92% 35
NW_021162553.1 250 2.89% 19
NW_021162593.1 120 1.29% 12
NW_021162599.1 2790 29.76% 242
NW_021162621.1 490 5.02% 43
NW_021162643.1 4650 18.30% 395
NW_021162814.1 160 1.29% 15
NW_021162871.1 520 3.75% 44
NW_021163002.1 20 0.13% 2
2538 contigs with no values (90225263 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 66898331 1 130 12.16 10
global segment-length histogram

Files

Filename Size md5
STRd_Cholinergic_GABA.bw 485.01 MB d60d20ef2985ada748165f34dd25f5be
genomic_resource.yaml 1.14 KB 9316c4265131034198c281470893fbff
statistics/