Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STRd_D1_Matrix_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRd_D1_Matrix_MSN cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRd_D1_Matrix_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STRd_D1_Matrix_MSN float

johansen2025Crossspecies_atac_macaque_STRd_D1_Matrix_MSN

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STRd_D1_Matrix_MSN [0.00344, 89.5]
n
2,635,108,131
mean
0.0752
sd
0.25

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 263510813188.68% 249308453
NC_005943.1 3420 20.65% 325
NC_027914.1 7815860 66.50% 677692
NC_041754.1 209521730 93.70% 19920627
NC_041755.1 182489560 93.01% 17289554
NC_041756.1 172912367 93.32% 16405259
NC_041757.1 157443720 92.63% 14896893
NC_041758.1 172906930 92.31% 16279846
NC_041759.1 165643090 92.49% 15653267
NC_041760.1 158000090 93.01% 15007289
NC_041761.1 133636120 91.73% 12628852
NC_041762.1 123233420 91.88% 11684349
NC_041763.1 90980730 91.42% 8695856
NC_041764.1 122796610 92.28% 11655693
NC_041765.1 120991686 93.04% 11452125
NC_041766.1 100942390 92.83% 9564190
NC_041767.1 118302116 92.38% 11240517
NC_041768.1 103553970 91.41% 9820709
NC_041769.1 73357044 92.13% 7030223
NC_041770.1 87129460 91.30% 8228616
NC_041771.1 68556870 92.05% 6484821
NC_041772.1 51503690 88.32% 4924875
NC_041773.1 71912195 93.23% 6872091
NC_041774.1 131055850 85.44% 11969336
NW_021160097.1 2170 5.86% 185
NW_021160098.1 12280 30.71% 1100
NW_021160099.1 7190 17.78% 603
NW_021160102.1 18630 37.12% 1637
NW_021160105.1 9950 18.14% 841
NW_021160106.1 26100 46.99% 2347
NW_021160107.1 11410 20.53% 979
NW_021160109.1 29280 35.57% 2574
NW_021160110.1 54920 46.49% 4865
NW_021160111.1 90415 67.97% 8008
NW_021160113.1 90560 77.84% 8508
NW_021160114.1 32430 49.20% 2882
NW_021160116.1 7320 20.68% 619
NW_021160121.1 16140 18.72% 1383
NW_021160122.1 38380 41.70% 3331
NW_021160123.1 18590 35.12% 1675
NW_021160125.1 1740 6.88% 143
NW_021160136.1 18310 30.65% 1593
NW_021160140.1 37740 28.97% 3244
NW_021160141.1 49590 36.96% 4243
NW_021160142.1 36530 76.40% 3419
NW_021160144.1 894889 72.76% 75865
NW_021160145.1 7350 27.35% 644
NW_021160147.1 12380 41.22% 1087
NW_021160148.1 13590 39.60% 1247
NW_021160150.1 9630 25.68% 839
NW_021160155.1 13830 25.36% 1225
NW_021160158.1 20190 26.79% 1783
NW_021160159.1 43640 50.87% 3776
NW_021160161.1 327442 44.35% 29054
NW_021160167.1 5910 15.62% 498
NW_021160168.1 4830 11.60% 405
NW_021160175.1 153060 82.67% 14361
NW_021160179.1 14180 36.47% 1201
NW_021160182.1 26130 44.99% 2361
NW_021160184.1 12630 20.60% 1079
NW_021160185.1 12880 20.73% 1102
NW_021160186.1 34220 53.06% 3078
NW_021160187.1 16430 21.50% 1410
NW_021160188.1 22380 26.98% 1935
NW_021160189.1 31350 30.94% 2711
NW_021160190.1 13360 37.39% 1166
NW_021160191.1 8350 29.97% 753
NW_021160193.1 2360 7.57% 205
NW_021160196.1 31285 67.86% 2852
NW_021160197.1 18400 35.51% 1592
NW_021160199.1 18140 32.44% 1539
NW_021160200.1 20260 34.34% 1752
NW_021160201.1 29490 47.99% 2660
NW_021160202.1 16110 24.60% 1439
NW_021160203.1 34980 48.44% 3075
NW_021160204.1 34576 47.47% 3000
NW_021160205.1 16500 22.53% 1381
NW_021160206.1 21160 25.26% 1867
NW_021160207.1 38990 39.46% 3348
NW_021160209.1 100510 15.00% 8915
NW_021160211.1 31650 23.74% 2848
NW_021160220.1 33240 49.82% 3065
NW_021160221.1 31650 44.66% 2729
NW_021160222.1 13420 17.57% 1164
NW_021160223.1 40880 49.07% 3749
NW_021160225.1 25060 46.55% 2216
NW_021160226.1 19680 54.62% 1767
NW_021160228.1 12490 26.11% 1089
NW_021160229.1 20480 42.68% 1876
NW_021160231.1 19700 36.15% 1726
NW_021160233.1 14880 23.02% 1340
NW_021160234.1 31320 47.78% 2971
NW_021160236.1 25010 32.15% 2184
NW_021160237.1 44310 51.69% 3968
NW_021160238.1 43110 41.27% 3904
NW_021160239.1 8710 29.87% 756
NW_021160242.1 8380 28.36% 731
NW_021160243.1 4520 14.34% 384
NW_021160244.1 26850 76.24% 2592
NW_021160245.1 9650 22.05% 862
NW_021160248.1 15150 20.27% 1289
NW_021160249.1 24720 32.66% 2170
NW_021160250.1 9040 14.06% 790
NW_021160251.1 36710 43.48% 3190
NW_021160252.1 45860 51.74% 4061
NW_021160255.1 8590 30.60% 744
NW_021160263.1 15170 28.83% 1292
NW_021160266.1 16480 21.97% 1385
NW_021160268.1 19100 28.20% 1634
NW_021160270.1 10540 30.26% 983
NW_021160271.1 6100 17.55% 546
NW_021160272.1 7990 22.83% 753
NW_021160273.1 10000 24.88% 857
NW_021160277.1 4820 10.75% 416
NW_021160278.1 24600 44.21% 2133
NW_021160279.1 27430 41.57% 2369
NW_021160282.1 56580 45.73% 5128
NW_021160284.1 7030 20.21% 623
NW_021160285.1 11750 26.34% 1023
NW_021160291.1 8070 17.82% 688
NW_021160293.1 25610 48.48% 2296
NW_021160294.1 34180 42.92% 3004
NW_021160295.1 33790 40.94% 2916
NW_021160297.1 22080 39.27% 1923
NW_021160298.1 11730 43.05% 1020
NW_021160300.1 29990 48.16% 2737
NW_021160305.1 6370 15.80% 521
NW_021160306.1 12330 31.24% 1082
NW_021160307.1 28477 54.05% 2504
NW_021160308.1 21110 39.15% 1841
NW_021160310.1 37440 64.26% 3498
NW_021160311.1 48340 61.39% 4307
NW_021160312.1 37130 41.99% 3313
NW_021160313.1 36480 38.55% 3241
NW_021160319.1 19567 45.05% 1688
NW_021160320.1 19110 36.36% 1688
NW_021160324.1 30160 47.41% 2680
NW_021160325.1 23110 35.47% 2019
NW_021160326.1 22050 33.85% 1893
NW_021160327.1 27340 41.44% 2435
NW_021160328.1 30290 47.83% 2797
NW_021160329.1 18070 33.65% 1622
NW_021160338.1 11320 30.17% 974
NW_021160339.1 5990 15.54% 519
NW_021160341.1 16630 35.91% 1427
NW_021160347.1 67100 40.60% 5840
NW_021160353.1 16270 39.51% 1443
NW_021160354.1 9070 21.61% 793
NW_021160355.1 23120 41.62% 1990
NW_021160356.1 18850 24.70% 1655
NW_021160357.1 6090 20.00% 530
NW_021160358.1 16970 43.01% 1503
NW_021160359.1 18700 45.55% 1700
NW_021160361.1 10830 23.01% 926
NW_021160362.1 15790 29.42% 1341
NW_021160363.1 27770 45.58% 2447
NW_021160364.1 25810 41.75% 2276
NW_021160365.1 28330 42.64% 2521
NW_021160366.1 38940 54.65% 3427
NW_021160367.1 43750 57.27% 3947
NW_021160368.1 13670 17.32% 1163
NW_021160369.1 18730 22.90% 1561
NW_021160370.1 44480 49.70% 3975
NW_021160371.1 27510 30.43% 2353
NW_021160372.1 73090 54.37% 6455
NW_021160373.1 30360 52.21% 2746
NW_021160374.1 57120 45.94% 4940
NW_021160375.1 111400 60.60% 10155
NW_021160376.1 379320 43.96% 33538
NW_021160381.1 3290 6.76% 289
NW_021160383.1 47927 69.46% 4386
NW_021160384.1 18080 22.71% 1532
NW_021160401.1 6110 37.54% 517
NW_021160410.1 11765 71.50% 1119
NW_021160417.1 9030 15.95% 795
NW_021160452.1 5670 33.49% 502
NW_021160482.1 1570 9.09% 136
NW_021160484.1 9260 53.22% 833
NW_021160495.1 395060 47.95% 34166
NW_021160514.1 6110 33.91% 535
NW_021160523.1 3540 19.58% 330
NW_021160525.1 7190 39.63% 629
NW_021160535.1 9270 50.58% 829
NW_021160549.1 4680 25.21% 438
NW_021160573.1 12165 63.91% 1142
NW_021160589.1 830 4.32% 66
NW_021160606.1 286700 28.50% 25232
NW_021160623.1 3640 18.40% 318
NW_021160625.1 1560 7.88% 132
NW_021160629.1 930 4.67% 78
NW_021160635.1 2780 13.84% 223
NW_021160655.1 12890 62.65% 1124
NW_021160656.1 9190 44.91% 813
NW_021160678.1 2100 10.11% 181
NW_021160682.1 17865 86.20% 1723
NW_021160688.1 9810 48.04% 885
NW_021160701.1 14286 67.34% 1338
NW_021160725.1 4040 18.66% 351
NW_021160726.1 17718 81.47% 1720
NW_021160734.1 3310 15.21% 294
NW_021160737.1 70 0.32% 6
NW_021160757.1 690 3.12% 60
NW_021160770.1 17970 79.40% 1746
NW_021160772.1 7730 34.09% 684
NW_021160805.1 12790 54.55% 1172
NW_021160821.1 3030 12.67% 259
NW_021160827.1 118390 16.14% 10862
NW_021160832.1 2590 10.76% 224
NW_021160834.1 10070 41.75% 836
NW_021160835.1 370 2.18% 34
NW_021160848.1 1510 6.21% 133
NW_021160868.1 700 2.87% 63
NW_021160890.1 10870 43.05% 929
NW_021160903.1 12386 46.76% 1165
NW_021160919.1 6120 23.48% 560
NW_021160925.1 3930 15.07% 325
NW_021160946.1 9110 34.41% 772
NW_021160955.1 7590 28.59% 657
NW_021160961.1 9340 34.90% 779
NW_021160976.1 15420 56.65% 1358
NW_021160983.1 730 2.68% 65
NW_021160986.1 640 2.34% 61
NW_021161026.1 1190 4.27% 100
NW_021161033.1 700 2.44% 60
NW_021161038.1 6530 24.13% 582
NW_021161041.1 7790 27.33% 658
NW_021161043.1 2440 8.37% 208
NW_021161046.1 10210 34.60% 929
NW_021161062.1 3990 13.47% 343
NW_021161066.1 18750 62.84% 1684
NW_021161106.1 16960 55.33% 1503
NW_021161107.1 5050 16.41% 438
NW_021161113.1 18780 55.68% 1645
NW_021161114.1 11620 37.67% 1121
NW_021161131.1 1440 4.61% 122
NW_021161133.1 27910 18.78% 2388
NW_021161138.1 1890 6.06% 156
NW_021161152.1 10550 33.52% 925
NW_021161164.1 11610 35.92% 1050
NW_021161166.1 20430 62.87% 1799
NW_021161184.1 4120 13.94% 375
NW_021161201.1 7850 23.64% 685
NW_021161211.1 12960 38.84% 1099
NW_021161213.1 4360 13.10% 362
NW_021161224.1 14470 42.93% 1353
NW_021161226.1 10230 30.69% 961
NW_021161241.1 4080 11.90% 348
NW_021161247.1 240 0.70% 22
NW_021161253.1 820 2.37% 75
NW_021161261.1 7430 21.26% 614
NW_021161269.1 22750 64.82% 1999
NW_021161274.1 300 0.87% 25
NW_021161282.1 27130 69.79% 2525
NW_021161303.1 8520 23.67% 724
NW_021161305.1 2340 6.49% 201
NW_021161307.1 5640 21.25% 501
NW_021161312.1 1530 4.28% 138
NW_021161320.1 31520 32.09% 2790
NW_021161336.1 11950 32.42% 1046
NW_021161338.1 8240 22.16% 665
NW_021161340.1 5750 15.64% 497
NW_021161348.1 13130 35.07% 1176
NW_021161355.1 21680 56.11% 1959
NW_021161360.1 2280 6.09% 205
NW_021161364.1 10950 28.67% 981
NW_021161377.1 28089 70.65% 2579
NW_021161379.1 1490 3.89% 122
NW_021161380.1 2250 7.07% 197
NW_021161385.1 3480 8.96% 296
NW_021161392.1 20760 53.07% 1888
NW_021161394.1 8630 22.22% 767
NW_021161396.1 2160 5.53% 183
NW_021161399.1 7530 34.35% 687
NW_021161404.1 6930 17.58% 589
NW_021161413.1 11230 28.35% 975
NW_021161421.1 3790 9.53% 333
NW_021161422.1 1570 3.97% 147
NW_021161427.1 7750 19.33% 708
NW_021161433.1 3940 9.74% 328
NW_021161437.1 5210 17.34% 444
NW_021161446.1 8140 19.89% 687
NW_021161463.1 890 2.13% 79
NW_021161468.1 9860 23.50% 838
NW_021161470.1 2610 6.23% 229
NW_021161483.1 610 1.44% 55
NW_021161486.1 13270 31.18% 1221
NW_021161494.1 4810 11.23% 415
NW_021161497.1 4820 11.23% 428
NW_021161505.1 16540 38.38% 1469
NW_021161507.1 18910 43.69% 1714
NW_021161508.1 29274 67.84% 2607
NW_021161519.1 24969 56.93% 2202
NW_021161520.1 8200 19.03% 753
NW_021161523.1 10735 24.81% 918
NW_021161525.1 24410 55.44% 2243
NW_021161526.1 16150 36.66% 1412
NW_021161532.1 5960 13.41% 508
NW_021161535.1 6410 14.35% 557
NW_021161537.1 25545 57.59% 2388
NW_021161545.1 24809 55.53% 2354
NW_021161552.1 6460 15.19% 532
NW_021161554.1 18980 42.03% 1653
NW_021161561.1 20230 44.77% 1810
NW_021161562.1 21200 46.63% 1936
NW_021161567.1 9520 20.91% 840
NW_021161570.1 410 0.91% 40
NW_021161582.1 24910 54.23% 2244
NW_021161585.1 24910 54.05% 2289
NW_021161590.1 32170 69.92% 3100
NW_021161593.1 34710 74.59% 3218
NW_021161596.1 162160 30.07% 14587
NW_021161601.1 17310 36.80% 1523
NW_021161608.1 7990 17.11% 697
NW_021161609.1 2840 6.04% 246
NW_021161614.1 11580 24.27% 1023
NW_021161616.1 15537 32.47% 1388
NW_021161617.1 3290 6.84% 287
NW_021161627.1 12080 36.13% 1080
NW_021161633.1 42480 85.97% 3944
NW_021161642.1 16430 33.02% 1393
NW_021161648.1 31520 61.95% 3023
NW_021161679.1 15610 29.94% 1356
NW_021161680.1 12300 23.77% 1067
NW_021161686.1 51690 38.21% 4630
NW_021161694.1 9600 21.10% 868
NW_021161695.1 22610 42.30% 1950
NW_021161696.1 11710 22.08% 1025
NW_021161699.1 25054 51.81% 2267
NW_021161700.1 2770 5.22% 238
NW_021161713.1 7480 13.88% 649
NW_021161715.1 3950 7.26% 349
NW_021161718.1 24800 45.52% 2263
NW_021161725.1 15730 49.99% 1362
NW_021161737.1 18330 32.82% 1575
NW_021161743.1 9490 16.95% 825
NW_021161747.1 2450 4.34% 216
NW_021161754.1 37240 65.12% 3391
NW_021161759.1 5660 9.85% 474
NW_021161767.1 28700 28.11% 2475
NW_021161769.1 14590 25.16% 1261
NW_021161772.1 15920 21.54% 1396
NW_021161784.1 3670 71.29% 317
NW_021161790.1 33707 55.86% 3021
NW_021161794.1 8510 14.08% 730
NW_021161796.1 11520 19.07% 984
NW_021161798.1 13390 28.44% 1187
NW_021161830.1 24200 54.08% 2068
NW_021161832.1 9700 15.30% 845
NW_021161839.1 12120 18.93% 1033
NW_021161842.1 27800 42.62% 2328
NW_021161843.1 16180 24.84% 1408
NW_021161845.1 42980 65.72% 3911
NW_021161850.1 858271 76.82% 79462
NW_021161853.1 26250 39.78% 2390
NW_021161857.1 23480 35.39% 2055
NW_021161862.1 16280 24.61% 1399
NW_021161876.1 36440 53.37% 3137
NW_021161878.1 26730 39.31% 2376
NW_021161881.1 33030 54.84% 2917
NW_021161888.1 37610 54.17% 3388
NW_021161902.1 29900 46.13% 2635
NW_021161927.1 19850 26.53% 1705
NW_021161934.1 35200 46.74% 3057
NW_021161939.1 40180 53.05% 3602
NW_021161954.1 24590 31.88% 2208
NW_021161955.1 19980 25.78% 1759
NW_021161956.1 35910 47.02% 3346
NW_021161958.1 43060 54.83% 3840
NW_021161961.1 38150 48.78% 3308
NW_021161962.1 8320 10.41% 718
NW_021161965.1 20630 26.10% 1770
NW_021161996.1 17780 20.69% 1560
NW_021162004.1 4360 15.35% 391
NW_021162007.1 27800 31.64% 2440
NW_021162009.1 62250 71.41% 5769
NW_021162025.1 23840 26.74% 2114
NW_021162035.1 18520 19.85% 1561
NW_021162047.1 28690 29.98% 2434
NW_021162055.1 43840 44.06% 3960
NW_021162083.1 70090 40.68% 5907
NW_021162091.1 39960 35.24% 3756
NW_021162100.1 33450 26.61% 3066
NW_021162108.1 23460 73.60% 2193
NW_021162157.1 10700 17.76% 941
NW_021162185.1 260 2.95% 24
NW_021162208.1 20020 8.04% 1710
NW_021162222.1 22960 60.65% 1938
NW_021162226.1 12740 29.18% 1068
NW_021162246.1 83980 79.50% 7623
NW_021162251.1 52980 74.18% 4831
NW_021162253.1 1490 4.76% 134
NW_021162263.1 2140 8.08% 191
NW_021162265.1 24000 62.10% 2176
NW_021162274.1 74430 73.30% 6921
NW_021162277.1 9360 37.63% 819
NW_021162460.1 460 6.12% 37
NW_021162463.1 1750 23.18% 158
NW_021162495.1 1990 30.21% 170
NW_021162553.1 1710 19.74% 147
NW_021162593.1 1500 16.13% 135
NW_021162599.1 8155 86.99% 777
NW_021162621.1 2950 30.19% 260
NW_021162643.1 20765 81.70% 1919
NW_021162814.1 2310 18.63% 203
NW_021162871.1 3690 26.58% 330
NW_021162949.1 340 2.27% 27
NW_021163002.1 630 3.97% 52
2533 contigs with no values (90119066 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 249308453 1 120 10.57 10
global segment-length histogram

Files

Filename Size md5
STRd_D1_Matrix_MSN.bw 1.37 GB ff243a0a8697bb8d37b35497eaff6791
genomic_resource.yaml 1.13 KB d5572536a43795bfc37ab7fab3514f3b
statistics/