Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STRd_D1_Striosome_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRd_D1_Striosome_MSN cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRd_D1_Striosome_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STRd_D1_Striosome_MSN float

johansen2025Crossspecies_atac_macaque_STRd_D1_Striosome_MSN

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STRd_D1_Striosome_MSN [0.011, 89.4]
n
2,281,403,292
mean
0.0879
sd
0.266

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 228140329276.78% 202810928
NC_005943.1 2670 16.12% 257
NC_027914.1 4847110 41.24% 395133
NC_041754.1 184795670 82.64% 16545173
NC_041755.1 158644360 80.86% 14094338
NC_041756.1 151079490 81.54% 13467780
NC_041757.1 136135560 80.10% 12067526
NC_041758.1 146858280 78.40% 12887786
NC_041759.1 142536580 79.59% 12598502
NC_041760.1 138655990 81.63% 12403471
NC_041761.1 115192160 79.07% 10191743
NC_041762.1 107641160 80.25% 9590192
NC_041763.1 82049630 82.45% 7441934
NC_041764.1 107071730 80.47% 9553196
NC_041765.1 104623136 80.45% 9253062
NC_041766.1 87829790 80.77% 7818434
NC_041767.1 104016280 81.23% 9312196
NC_041768.1 90442640 79.84% 8061251
NC_041769.1 66612174 83.66% 6078643
NC_041770.1 74898270 78.48% 6623291
NC_041771.1 59370960 79.72% 5253781
NC_041772.1 46297950 79.39% 4247859
NC_041773.1 64454925 83.56% 5848053
NC_041774.1 100358110 65.43% 8479452
NW_021160097.1 1230 3.32% 100
NW_021160098.1 7010 17.53% 585
NW_021160099.1 3720 9.20% 318
NW_021160102.1 11530 22.97% 936
NW_021160105.1 5970 10.88% 495
NW_021160106.1 18690 33.65% 1599
NW_021160107.1 5960 10.72% 483
NW_021160109.1 18160 22.06% 1560
NW_021160110.1 38050 32.21% 3293
NW_021160111.1 61215 46.02% 5018
NW_021160113.1 76880 66.09% 6994
NW_021160114.1 22760 34.53% 1994
NW_021160116.1 3520 9.95% 298
NW_021160121.1 8770 10.17% 742
NW_021160122.1 22250 24.17% 1852
NW_021160123.1 12220 23.09% 1043
NW_021160125.1 880 3.48% 78
NW_021160136.1 11740 19.65% 989
NW_021160140.1 20860 16.01% 1749
NW_021160141.1 29000 21.62% 2435
NW_021160142.1 31800 66.51% 2831
NW_021160144.1 516679 42.01% 41910
NW_021160145.1 4400 16.37% 381
NW_021160147.1 7150 23.80% 591
NW_021160148.1 11170 32.55% 965
NW_021160150.1 6650 17.73% 589
NW_021160155.1 8890 16.30% 754
NW_021160158.1 11400 15.13% 967
NW_021160159.1 25680 29.93% 2152
NW_021160161.1 228142 30.90% 19378
NW_021160167.1 3240 8.56% 279
NW_021160168.1 2170 5.21% 186
NW_021160175.1 130430 70.45% 11472
NW_021160179.1 7880 20.27% 658
NW_021160182.1 19550 33.66% 1728
NW_021160184.1 7630 12.45% 655
NW_021160185.1 7150 11.51% 610
NW_021160186.1 24710 38.32% 2103
NW_021160187.1 9100 11.91% 749
NW_021160188.1 13840 16.68% 1135
NW_021160189.1 19600 19.34% 1682
NW_021160190.1 9370 26.22% 787
NW_021160191.1 5770 20.71% 478
NW_021160193.1 1020 3.27% 79
NW_021160196.1 24935 54.08% 2176
NW_021160197.1 11030 21.29% 922
NW_021160199.1 10690 19.12% 878
NW_021160200.1 11770 19.95% 976
NW_021160201.1 21100 34.34% 1788
NW_021160202.1 11010 16.81% 959
NW_021160203.1 22710 31.45% 1900
NW_021160204.1 20990 28.82% 1761
NW_021160205.1 7990 10.91% 678
NW_021160206.1 13210 15.77% 1128
NW_021160207.1 22580 22.85% 1891
NW_021160209.1 66650 9.95% 5761
NW_021160211.1 20810 15.61% 1797
NW_021160220.1 25860 38.76% 2279
NW_021160221.1 16590 23.41% 1370
NW_021160222.1 7590 9.94% 662
NW_021160223.1 31790 38.16% 2825
NW_021160225.1 18170 33.75% 1577
NW_021160226.1 14050 38.99% 1210
NW_021160228.1 7550 15.78% 630
NW_021160229.1 13590 28.32% 1141
NW_021160231.1 11400 20.92% 927
NW_021160233.1 10970 16.97% 964
NW_021160234.1 26980 41.16% 2487
NW_021160236.1 15700 20.18% 1307
NW_021160237.1 31280 36.49% 2646
NW_021160238.1 31250 29.92% 2718
NW_021160239.1 5760 19.75% 474
NW_021160242.1 5380 18.21% 464
NW_021160243.1 1980 6.28% 175
NW_021160244.1 24370 69.19% 2306
NW_021160245.1 5640 12.89% 487
NW_021160248.1 7830 10.47% 651
NW_021160249.1 15890 20.99% 1383
NW_021160250.1 5230 8.13% 442
NW_021160251.1 23280 27.57% 1949
NW_021160252.1 31420 35.45% 2658
NW_021160255.1 5430 19.34% 466
NW_021160263.1 7840 14.90% 671
NW_021160266.1 7530 10.04% 651
NW_021160268.1 10450 15.43% 878
NW_021160270.1 7930 22.77% 725
NW_021160271.1 3910 11.25% 348
NW_021160272.1 6550 18.72% 603
NW_021160273.1 5890 14.65% 493
NW_021160277.1 2460 5.48% 215
NW_021160278.1 14590 26.22% 1207
NW_021160279.1 17640 26.73% 1488
NW_021160282.1 41950 33.91% 3654
NW_021160284.1 4300 12.36% 381
NW_021160285.1 6690 15.00% 549
NW_021160291.1 4150 9.16% 354
NW_021160293.1 17950 33.98% 1572
NW_021160294.1 21420 26.90% 1841
NW_021160295.1 19900 24.11% 1652
NW_021160297.1 13640 24.26% 1159
NW_021160298.1 8380 30.76% 701
NW_021160300.1 22090 35.47% 1905
NW_021160305.1 3050 7.57% 270
NW_021160306.1 7120 18.04% 593
NW_021160307.1 18700 35.49% 1543
NW_021160308.1 13460 24.96% 1103
NW_021160310.1 30640 52.59% 2786
NW_021160311.1 32870 41.74% 2772
NW_021160312.1 25590 28.94% 2234
NW_021160313.1 25390 26.83% 2187
NW_021160319.1 12140 27.95% 1035
NW_021160320.1 12380 23.56% 1045
NW_021160324.1 21170 33.28% 1825
NW_021160325.1 14480 22.23% 1200
NW_021160326.1 14490 22.24% 1205
NW_021160327.1 17520 26.55% 1495
NW_021160328.1 23730 37.47% 2141
NW_021160329.1 12340 22.98% 1044
NW_021160338.1 6440 17.16% 530
NW_021160339.1 2860 7.42% 252
NW_021160341.1 8710 18.81% 736
NW_021160347.1 40460 24.48% 3356
NW_021160353.1 10680 25.94% 899
NW_021160354.1 5180 12.34% 439
NW_021160355.1 14570 26.23% 1246
NW_021160356.1 11260 14.75% 951
NW_021160357.1 3540 11.63% 300
NW_021160358.1 11080 28.08% 935
NW_021160359.1 13960 34.00% 1220
NW_021160361.1 5700 12.11% 480
NW_021160362.1 8630 16.08% 714
NW_021160363.1 18590 30.51% 1531
NW_021160364.1 16450 26.61% 1418
NW_021160365.1 19890 29.94% 1711
NW_021160366.1 26910 37.76% 2284
NW_021160367.1 32600 42.68% 2782
NW_021160368.1 7810 9.89% 642
NW_021160369.1 9220 11.27% 772
NW_021160370.1 30970 34.61% 2676
NW_021160371.1 14590 16.14% 1222
NW_021160372.1 49170 36.57% 4097
NW_021160373.1 22480 38.66% 1928
NW_021160374.1 34400 27.67% 2875
NW_021160375.1 82690 44.98% 7109
NW_021160376.1 246110 28.52% 20157
NW_021160381.1 1710 3.51% 151
NW_021160383.1 37927 54.97% 3296
NW_021160384.1 9270 11.64% 793
NW_021160401.1 2940 18.07% 241
NW_021160410.1 10070 61.20% 930
NW_021160417.1 6090 10.76% 496
NW_021160452.1 3750 22.15% 317
NW_021160482.1 600 3.47% 55
NW_021160484.1 7170 41.21% 619
NW_021160495.1 231060 28.05% 19115
NW_021160514.1 4150 23.03% 344
NW_021160523.1 2450 13.55% 218
NW_021160525.1 3740 20.62% 312
NW_021160535.1 6250 34.10% 542
NW_021160549.1 3730 20.09% 339
NW_021160573.1 10170 53.43% 931
NW_021160589.1 360 1.87% 27
NW_021160606.1 177420 17.64% 14659
NW_021160623.1 2380 12.03% 196
NW_021160625.1 640 3.23% 59
NW_021160629.1 630 3.17% 51
NW_021160635.1 990 4.93% 85
NW_021160655.1 8010 38.93% 670
NW_021160656.1 6740 32.94% 586
NW_021160678.1 980 4.72% 89
NW_021160682.1 16325 78.77% 1499
NW_021160688.1 7600 37.22% 672
NW_021160701.1 11646 54.89% 1075
NW_021160725.1 1990 9.19% 170
NW_021160726.1 16408 75.45% 1585
NW_021160734.1 1790 8.22% 146
NW_021160757.1 200 0.90% 19
NW_021160770.1 16250 71.80% 1563
NW_021160772.1 5100 22.49% 428
NW_021160805.1 9400 40.09% 812
NW_021160821.1 1580 6.61% 131
NW_021160827.1 91950 12.53% 8196
NW_021160832.1 1290 5.36% 106
NW_021160834.1 5480 22.72% 439
NW_021160835.1 20 0.12% 2
NW_021160848.1 740 3.04% 60
NW_021160868.1 330 1.35% 31
NW_021160890.1 6380 25.27% 521
NW_021160903.1 10196 38.50% 907
NW_021160919.1 4450 17.07% 387
NW_021160925.1 1930 7.40% 167
NW_021160946.1 5930 22.40% 500
NW_021160955.1 4450 16.76% 365
NW_021160961.1 4010 14.99% 336
NW_021160976.1 10710 39.35% 891
NW_021160983.1 420 1.54% 32
NW_021160986.1 260 0.95% 23
NW_021161026.1 490 1.76% 44
NW_021161033.1 190 0.66% 19
NW_021161038.1 4150 15.33% 368
NW_021161041.1 4350 15.26% 375
NW_021161043.1 1110 3.81% 99
NW_021161046.1 7330 24.84% 664
NW_021161062.1 1880 6.35% 151
NW_021161066.1 13670 45.82% 1176
NW_021161106.1 10990 35.86% 928
NW_021161107.1 2990 9.72% 259
NW_021161113.1 12290 36.44% 1011
NW_021161114.1 9740 31.57% 895
NW_021161131.1 600 1.92% 52
NW_021161133.1 15400 10.36% 1306
NW_021161138.1 770 2.47% 69
NW_021161152.1 6340 20.15% 541
NW_021161164.1 7960 24.63% 688
NW_021161166.1 14080 43.33% 1128
NW_021161184.1 2550 8.63% 217
NW_021161201.1 5080 15.30% 449
NW_021161211.1 7640 22.90% 659
NW_021161213.1 1970 5.92% 169
NW_021161224.1 11580 34.36% 1060
NW_021161226.1 7600 22.80% 703
NW_021161241.1 1830 5.34% 154
NW_021161247.1 140 0.41% 13
NW_021161253.1 510 1.47% 47
NW_021161261.1 3970 11.36% 330
NW_021161269.1 14850 42.31% 1222
NW_021161274.1 180 0.52% 15
NW_021161282.1 21940 56.44% 1947
NW_021161303.1 4100 11.39% 340
NW_021161305.1 1230 3.41% 108
NW_021161307.1 3690 13.90% 321
NW_021161312.1 740 2.07% 63
NW_021161320.1 19780 20.14% 1665
NW_021161336.1 7340 19.91% 605
NW_021161338.1 4020 10.81% 340
NW_021161340.1 3540 9.63% 294
NW_021161348.1 9390 25.08% 798
NW_021161355.1 16100 41.67% 1395
NW_021161360.1 1210 3.23% 111
NW_021161364.1 6960 18.23% 614
NW_021161377.1 22220 55.89% 1957
NW_021161379.1 750 1.96% 64
NW_021161380.1 740 2.32% 66
NW_021161385.1 1890 4.87% 149
NW_021161392.1 14710 37.61% 1299
NW_021161394.1 5690 14.65% 477
NW_021161396.1 740 1.89% 68
NW_021161399.1 5780 26.37% 508
NW_021161404.1 3790 9.61% 321
NW_021161413.1 6720 16.97% 567
NW_021161421.1 1820 4.57% 150
NW_021161422.1 1060 2.68% 91
NW_021161427.1 5570 13.89% 491
NW_021161433.1 1610 3.98% 141
NW_021161437.1 2580 8.59% 213
NW_021161446.1 3900 9.53% 341
NW_021161463.1 340 0.81% 31
NW_021161468.1 5140 12.25% 444
NW_021161470.1 1450 3.46% 119
NW_021161483.1 210 0.50% 20
NW_021161486.1 9810 23.05% 860
NW_021161494.1 2620 6.12% 210
NW_021161497.1 2300 5.36% 194
NW_021161505.1 10630 24.67% 904
NW_021161507.1 12980 29.99% 1102
NW_021161508.1 21904 50.76% 1894
NW_021161519.1 16540 37.71% 1356
NW_021161520.1 6120 14.20% 557
NW_021161523.1 6120 14.15% 515
NW_021161525.1 18870 42.86% 1663
NW_021161526.1 10150 23.04% 875
NW_021161532.1 2610 5.87% 224
NW_021161535.1 3360 7.52% 281
NW_021161537.1 20945 47.22% 1919
NW_021161545.1 20989 46.98% 1979
NW_021161552.1 2960 6.96% 254
NW_021161554.1 11750 26.02% 996
NW_021161561.1 14330 31.71% 1226
NW_021161562.1 16460 36.20% 1478
NW_021161567.1 5610 12.32% 471
NW_021161570.1 170 0.38% 17
NW_021161582.1 18040 39.27% 1570
NW_021161585.1 18580 40.32% 1638
NW_021161590.1 28940 62.90% 2674
NW_021161593.1 27764 59.66% 2494
NW_021161596.1 112770 20.91% 9854
NW_021161601.1 10350 22.01% 851
NW_021161608.1 4740 10.15% 404
NW_021161609.1 1720 3.66% 145
NW_021161614.1 6650 13.94% 561
NW_021161616.1 10407 21.75% 908
NW_021161617.1 1170 2.43% 111
NW_021161627.1 8030 24.02% 674
NW_021161633.1 35710 72.27% 3142
NW_021161642.1 7870 15.82% 683
NW_021161648.1 28270 55.56% 2669
NW_021161679.1 9570 18.36% 813
NW_021161680.1 7960 15.38% 683
NW_021161686.1 35660 26.36% 3119
NW_021161694.1 5740 12.62% 510
NW_021161695.1 13030 24.38% 1104
NW_021161696.1 6680 12.59% 561
NW_021161699.1 17794 36.80% 1534
NW_021161700.1 1280 2.41% 116
NW_021161713.1 3370 6.25% 290
NW_021161715.1 2090 3.84% 175
NW_021161718.1 19070 35.00% 1680
NW_021161725.1 9780 31.08% 813
NW_021161737.1 10110 18.10% 840
NW_021161743.1 5400 9.64% 475
NW_021161747.1 1170 2.07% 107
NW_021161754.1 28380 49.62% 2490
NW_021161759.1 2790 4.86% 239
NW_021161767.1 16550 16.21% 1396
NW_021161769.1 8620 14.87% 736
NW_021161772.1 8800 11.90% 758
NW_021161784.1 2480 48.17% 203
NW_021161790.1 25260 41.86% 2205
NW_021161794.1 4350 7.20% 365
NW_021161796.1 5590 9.25% 462
NW_021161798.1 8480 18.01% 733
NW_021161830.1 13760 30.75% 1156
NW_021161832.1 6080 9.59% 516
NW_021161839.1 6360 9.93% 554
NW_021161842.1 12960 19.87% 1049
NW_021161843.1 9440 14.49% 802
NW_021161845.1 32590 49.84% 2835
NW_021161850.1 667311 59.73% 58198
NW_021161853.1 19600 29.70% 1760
NW_021161857.1 14050 21.18% 1161
NW_021161862.1 8770 13.25% 756
NW_021161876.1 21300 31.20% 1723
NW_021161878.1 17560 25.83% 1523
NW_021161881.1 21730 36.08% 1814
NW_021161888.1 27400 39.46% 2424
NW_021161902.1 19760 30.49% 1681
NW_021161927.1 10690 14.29% 912
NW_021161934.1 23130 30.71% 1952
NW_021161939.1 29410 38.83% 2547
NW_021161954.1 16130 20.91% 1376
NW_021161955.1 13020 16.80% 1098
NW_021161956.1 28920 37.87% 2566
NW_021161958.1 29870 38.03% 2462
NW_021161961.1 22510 28.78% 1876
NW_021161962.1 4620 5.78% 389
NW_021161965.1 12660 16.02% 1052
NW_021161996.1 10230 11.90% 868
NW_021162004.1 2640 9.30% 229
NW_021162007.1 16700 19.00% 1402
NW_021162009.1 50760 58.23% 4559
NW_021162025.1 15160 17.00% 1345
NW_021162035.1 9280 9.95% 788
NW_021162047.1 15220 15.91% 1268
NW_021162055.1 29860 30.01% 2597
NW_021162083.1 39520 22.94% 3249
NW_021162091.1 31430 27.71% 2896
NW_021162100.1 24300 19.33% 2204
NW_021162108.1 20140 63.19% 1810
NW_021162157.1 6050 10.04% 516
NW_021162185.1 160 1.81% 14
NW_021162208.1 9250 3.72% 812
NW_021162222.1 13310 35.16% 1072
NW_021162226.1 6100 13.97% 522
NW_021162246.1 66260 62.72% 5570
NW_021162251.1 41440 58.02% 3534
NW_021162253.1 570 1.82% 54
NW_021162263.1 1250 4.72% 106
NW_021162265.1 18290 47.32% 1558
NW_021162274.1 58970 58.07% 5157
NW_021162277.1 5910 23.76% 486
NW_021162460.1 140 1.86% 14
NW_021162463.1 1080 14.31% 92
NW_021162495.1 1020 15.48% 80
NW_021162553.1 940 10.85% 84
NW_021162593.1 520 5.59% 48
NW_021162599.1 7200 76.80% 655
NW_021162621.1 1760 18.01% 145
NW_021162643.1 16370 64.41% 1437
NW_021162814.1 1350 10.89% 117
NW_021162871.1 2620 18.87% 217
NW_021162949.1 150 1.00% 13
NW_021163002.1 230 1.45% 22
2534 contigs with no values (90140842 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 202810928 1 140 11.25 10
global segment-length histogram

Files

Filename Size md5
STRd_D1_Striosome_MSN.bw 1.08 GB 8692a4fc7475d74e46f3306057929026
genomic_resource.yaml 1.14 KB a0e954bccac50c5f6f5e1c694c704114
statistics/