Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STRd_D2_Matrix_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRd_D2_Matrix_MSN cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRd_D2_Matrix_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STRd_D2_Matrix_MSN float

johansen2025Crossspecies_atac_macaque_STRd_D2_Matrix_MSN

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STRd_D2_Matrix_MSN [0.00294, 94.3]
n
2,655,113,267
mean
0.0734
sd
0.249

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 265511326789.36% 252368513
NC_005943.1 3680 22.22% 336
NC_027914.1 7911290 67.31% 687791
NC_041754.1 210919200 94.32% 20142728
NC_041755.1 183863480 93.71% 17504762
NC_041756.1 174179827 94.00% 16600394
NC_041757.1 158694040 93.37% 15088250
NC_041758.1 174349340 93.08% 16494366
NC_041759.1 166836420 93.16% 15837769
NC_041760.1 159187314 93.71% 15192045
NC_041761.1 134568520 92.37% 12776772
NC_041762.1 124169650 92.58% 11830641
NC_041763.1 91453750 91.90% 8773961
NC_041764.1 123699100 92.96% 11795534
NC_041765.1 121917006 93.75% 11595235
NC_041766.1 101714390 93.54% 9684732
NC_041767.1 119167050 93.06% 11377093
NC_041768.1 104251350 92.03% 9928711
NC_041769.1 73754894 92.63% 7094267
NC_041770.1 87786650 91.99% 8329239
NC_041771.1 69082230 92.76% 6569297
NC_041772.1 51697490 88.65% 4955670
NC_041773.1 72265995 93.68% 6930858
NC_041774.1 132992710 86.70% 12230566
NW_021160097.1 2210 5.96% 189
NW_021160098.1 12790 31.98% 1131
NW_021160099.1 7810 19.31% 673
NW_021160102.1 19760 39.37% 1742
NW_021160105.1 10860 19.80% 956
NW_021160106.1 26950 48.52% 2409
NW_021160107.1 12710 22.87% 1090
NW_021160109.1 31040 37.71% 2709
NW_021160110.1 58120 49.20% 5179
NW_021160111.1 92885 69.83% 8237
NW_021160113.1 91950 79.04% 8665
NW_021160114.1 33500 50.82% 3028
NW_021160116.1 7700 21.76% 657
NW_021160121.1 16640 19.30% 1453
NW_021160122.1 40530 44.04% 3522
NW_021160123.1 18940 35.78% 1719
NW_021160125.1 1840 7.27% 159
NW_021160136.1 19540 32.71% 1697
NW_021160140.1 40300 30.94% 3456
NW_021160141.1 52540 39.16% 4538
NW_021160142.1 36890 77.15% 3470
NW_021160144.1 893589 72.66% 75578
NW_021160145.1 7470 27.80% 641
NW_021160147.1 13090 43.58% 1126
NW_021160148.1 14250 41.52% 1302
NW_021160150.1 10150 27.07% 912
NW_021160155.1 14890 27.31% 1318
NW_021160158.1 21280 28.24% 1870
NW_021160159.1 45000 52.45% 3903
NW_021160161.1 336422 45.56% 30047
NW_021160167.1 6220 16.44% 545
NW_021160168.1 4570 10.97% 394
NW_021160175.1 154850 83.64% 14686
NW_021160179.1 15650 40.26% 1374
NW_021160182.1 27470 47.29% 2471
NW_021160184.1 13120 21.40% 1139
NW_021160185.1 14530 23.39% 1258
NW_021160186.1 35440 54.95% 3186
NW_021160187.1 17930 23.47% 1523
NW_021160188.1 22920 27.63% 1984
NW_021160189.1 32460 32.03% 2802
NW_021160190.1 14280 39.96% 1237
NW_021160191.1 8370 30.04% 740
NW_021160193.1 2460 7.89% 216
NW_021160196.1 32285 70.02% 2964
NW_021160197.1 19930 38.47% 1709
NW_021160199.1 18820 33.66% 1611
NW_021160200.1 20600 34.92% 1783
NW_021160201.1 32260 52.50% 2904
NW_021160202.1 16760 25.60% 1491
NW_021160203.1 35710 49.46% 3161
NW_021160204.1 34860 47.86% 3068
NW_021160205.1 17430 23.80% 1450
NW_021160206.1 21850 26.09% 1934
NW_021160207.1 38970 39.44% 3373
NW_021160209.1 102690 15.33% 9225
NW_021160211.1 32460 24.35% 2928
NW_021160220.1 34090 51.09% 3102
NW_021160221.1 31470 44.41% 2663
NW_021160222.1 13990 18.32% 1216
NW_021160223.1 42810 51.38% 3958
NW_021160225.1 25970 48.24% 2281
NW_021160226.1 20220 56.12% 1815
NW_021160228.1 13190 27.58% 1164
NW_021160229.1 21050 43.87% 1908
NW_021160231.1 20110 36.90% 1756
NW_021160233.1 15050 23.28% 1371
NW_021160234.1 31600 48.21% 3004
NW_021160236.1 26700 34.32% 2312
NW_021160237.1 45200 52.73% 4079
NW_021160238.1 44600 42.70% 4052
NW_021160239.1 9300 31.89% 817
NW_021160242.1 9110 30.83% 801
NW_021160243.1 4460 14.15% 383
NW_021160244.1 26940 76.49% 2600
NW_021160245.1 10350 23.65% 886
NW_021160248.1 15540 20.79% 1351
NW_021160249.1 25220 33.32% 2249
NW_021160250.1 9250 14.39% 797
NW_021160251.1 38900 46.08% 3437
NW_021160252.1 46770 52.77% 4157
NW_021160255.1 8490 30.24% 746
NW_021160263.1 16760 31.85% 1398
NW_021160266.1 16240 21.65% 1375
NW_021160268.1 19450 28.72% 1657
NW_021160270.1 11140 31.99% 1035
NW_021160271.1 6290 18.10% 559
NW_021160272.1 8300 23.72% 777
NW_021160273.1 10410 25.90% 909
NW_021160277.1 5270 11.75% 458
NW_021160278.1 26240 47.16% 2307
NW_021160279.1 28430 43.08% 2476
NW_021160282.1 58470 47.26% 5293
NW_021160284.1 7850 22.56% 705
NW_021160285.1 12120 27.17% 1052
NW_021160291.1 8660 19.13% 742
NW_021160293.1 26050 49.31% 2330
NW_021160294.1 35030 43.99% 3083
NW_021160295.1 35620 43.15% 3061
NW_021160297.1 23350 41.53% 2068
NW_021160298.1 11440 41.99% 1020
NW_021160300.1 30970 49.73% 2837
NW_021160305.1 7380 18.31% 616
NW_021160306.1 12760 32.33% 1127
NW_021160307.1 28980 55.00% 2578
NW_021160308.1 21530 39.93% 1874
NW_021160310.1 37700 64.71% 3509
NW_021160311.1 49850 63.30% 4422
NW_021160312.1 39170 44.30% 3514
NW_021160313.1 38210 40.38% 3414
NW_021160319.1 20240 46.60% 1732
NW_021160320.1 20100 38.25% 1769
NW_021160324.1 30410 47.81% 2764
NW_021160325.1 24250 37.22% 2127
NW_021160326.1 22730 34.89% 1959
NW_021160327.1 28209 42.75% 2511
NW_021160328.1 30680 48.45% 2850
NW_021160329.1 19320 35.98% 1706
NW_021160338.1 12270 32.70% 1038
NW_021160339.1 6420 16.66% 552
NW_021160341.1 17260 37.27% 1472
NW_021160347.1 70460 42.63% 6101
NW_021160353.1 17360 42.16% 1529
NW_021160354.1 9450 22.51% 819
NW_021160355.1 23790 42.82% 2098
NW_021160356.1 20440 26.78% 1774
NW_021160357.1 6280 20.62% 550
NW_021160358.1 17910 45.39% 1583
NW_021160359.1 19210 46.79% 1742
NW_021160361.1 11540 24.51% 959
NW_021160362.1 16350 30.47% 1405
NW_021160363.1 28910 47.45% 2501
NW_021160364.1 26690 43.18% 2379
NW_021160365.1 29190 43.94% 2619
NW_021160366.1 39880 55.97% 3538
NW_021160367.1 44870 58.74% 4094
NW_021160368.1 14820 18.77% 1246
NW_021160369.1 18140 22.18% 1527
NW_021160370.1 46520 51.98% 4164
NW_021160371.1 28840 31.90% 2467
NW_021160372.1 76300 56.75% 6735
NW_021160373.1 31610 54.36% 2843
NW_021160374.1 59660 47.99% 5191
NW_021160375.1 113890 61.95% 10423
NW_021160376.1 381150 44.17% 33619
NW_021160381.1 3420 7.02% 302
NW_021160383.1 48517 70.32% 4470
NW_021160384.1 18630 23.40% 1607
NW_021160401.1 6460 39.70% 543
NW_021160410.1 11725 71.25% 1104
NW_021160417.1 9470 16.73% 841
NW_021160452.1 5870 34.67% 517
NW_021160482.1 1780 10.30% 156
NW_021160484.1 9510 54.66% 844
NW_021160495.1 405600 49.23% 35044
NW_021160514.1 6278 34.84% 550
NW_021160523.1 3830 21.18% 352
NW_021160525.1 7310 40.29% 615
NW_021160535.1 9150 49.93% 821
NW_021160549.1 5010 26.98% 468
NW_021160573.1 12365 64.96% 1170
NW_021160589.1 790 4.11% 70
NW_021160606.1 285740 28.41% 25135
NW_021160623.1 3450 17.44% 313
NW_021160625.1 1650 8.34% 146
NW_021160629.1 1040 5.23% 83
NW_021160635.1 2880 14.34% 241
NW_021160655.1 13490 65.57% 1198
NW_021160656.1 8770 42.86% 770
NW_021160678.1 2260 10.88% 192
NW_021160682.1 17725 85.52% 1710
NW_021160688.1 10480 51.32% 959
NW_021160701.1 13816 65.12% 1313
NW_021160725.1 4380 20.23% 385
NW_021160726.1 17778 81.75% 1724
NW_021160734.1 3570 16.40% 310
NW_021160737.1 60 0.28% 6
NW_021160757.1 710 3.21% 62
NW_021160770.1 17912 79.14% 1727
NW_021160772.1 8010 35.32% 708
NW_021160805.1 13090 55.83% 1192
NW_021160821.1 3180 13.30% 265
NW_021160827.1 120130 16.37% 11066
NW_021160832.1 2390 9.93% 202
NW_021160834.1 10800 44.78% 905
NW_021160835.1 350 2.06% 33
NW_021160848.1 1350 5.55% 116
NW_021160868.1 760 3.11% 66
NW_021160890.1 11170 44.24% 983
NW_021160903.1 12606 47.59% 1199
NW_021160919.1 6530 25.05% 603
NW_021160925.1 4150 15.91% 350
NW_021160946.1 9250 34.94% 820
NW_021160955.1 8000 30.14% 710
NW_021160961.1 9370 35.01% 776
NW_021160976.1 16040 58.93% 1425
NW_021160983.1 670 2.46% 61
NW_021160986.1 600 2.19% 51
NW_021161026.1 1440 5.16% 130
NW_021161033.1 780 2.72% 69
NW_021161038.1 6840 25.27% 601
NW_021161041.1 8140 28.56% 700
NW_021161043.1 2290 7.85% 200
NW_021161046.1 10140 34.37% 930
NW_021161062.1 4110 13.87% 357
NW_021161066.1 18960 63.55% 1758
NW_021161106.1 17090 55.76% 1499
NW_021161107.1 5360 17.42% 495
NW_021161113.1 19510 57.85% 1729
NW_021161114.1 11570 37.51% 1099
NW_021161131.1 1350 4.32% 116
NW_021161133.1 28180 18.97% 2430
NW_021161138.1 2130 6.83% 180
NW_021161152.1 11120 35.34% 981
NW_021161164.1 11230 34.75% 1009
NW_021161166.1 20680 63.63% 1845
NW_021161184.1 4310 14.58% 384
NW_021161201.1 7560 22.77% 698
NW_021161211.1 13610 40.79% 1148
NW_021161213.1 4810 14.45% 408
NW_021161224.1 15030 44.59% 1399
NW_021161226.1 10090 30.27% 944
NW_021161241.1 4460 13.01% 372
NW_021161247.1 210 0.61% 20
NW_021161253.1 820 2.37% 78
NW_021161261.1 7670 21.94% 652
NW_021161269.1 23430 66.76% 2058
NW_021161274.1 400 1.16% 38
NW_021161282.1 27340 70.33% 2548
NW_021161303.1 8680 24.11% 731
NW_021161305.1 2520 6.99% 220
NW_021161307.1 5990 22.57% 529
NW_021161312.1 1870 5.23% 168
NW_021161320.1 32190 32.77% 2863
NW_021161336.1 13050 35.40% 1126
NW_021161338.1 8990 24.17% 753
NW_021161340.1 6030 16.40% 521
NW_021161348.1 13320 35.58% 1198
NW_021161355.1 21760 56.32% 1968
NW_021161360.1 2500 6.67% 221
NW_021161364.1 11280 29.54% 1015
NW_021161377.1 28130 70.75% 2581
NW_021161379.1 1570 4.10% 143
NW_021161380.1 1890 5.94% 158
NW_021161385.1 3760 9.68% 335
NW_021161392.1 21130 54.02% 1913
NW_021161394.1 9230 23.77% 817
NW_021161396.1 2170 5.55% 189
NW_021161399.1 7710 35.17% 695
NW_021161404.1 7290 18.49% 638
NW_021161413.1 11290 28.50% 956
NW_021161421.1 3620 9.10% 322
NW_021161422.1 1590 4.02% 145
NW_021161427.1 7810 19.48% 699
NW_021161433.1 4050 10.01% 335
NW_021161437.1 5320 17.71% 458
NW_021161446.1 8230 20.11% 694
NW_021161463.1 820 1.97% 71
NW_021161468.1 9800 23.36% 815
NW_021161470.1 2980 7.11% 270
NW_021161483.1 680 1.61% 62
NW_021161486.1 13080 30.73% 1201
NW_021161494.1 5170 12.07% 460
NW_021161497.1 4970 11.58% 430
NW_021161505.1 16940 39.31% 1514
NW_021161507.1 19740 45.60% 1771
NW_021161508.1 29534 68.44% 2685
NW_021161519.1 25649 58.48% 2248
NW_021161520.1 8600 19.96% 787
NW_021161523.1 11060 25.56% 963
NW_021161525.1 24890 56.53% 2290
NW_021161526.1 16440 37.32% 1469
NW_021161532.1 6130 13.79% 519
NW_021161535.1 6620 14.83% 571
NW_021161537.1 25735 58.02% 2412
NW_021161545.1 24789 55.48% 2360
NW_021161552.1 6380 15.00% 552
NW_021161554.1 19170 42.45% 1679
NW_021161561.1 20580 45.55% 1830
NW_021161562.1 21120 46.45% 1936
NW_021161567.1 9710 21.33% 834
NW_021161570.1 710 1.57% 65
NW_021161582.1 25510 55.53% 2311
NW_021161585.1 25190 54.66% 2326
NW_021161590.1 32500 70.64% 3112
NW_021161593.1 34740 74.66% 3233
NW_021161596.1 165680 30.73% 14892
NW_021161601.1 17880 38.02% 1561
NW_021161608.1 7850 16.81% 694
NW_021161609.1 3150 6.69% 280
NW_021161614.1 11610 24.33% 1022
NW_021161616.1 15550 32.50% 1415
NW_021161617.1 3230 6.72% 285
NW_021161627.1 12320 36.85% 1080
NW_021161633.1 42750 86.51% 3958
NW_021161642.1 18150 36.47% 1590
NW_021161648.1 31530 61.97% 3030
NW_021161679.1 16220 31.11% 1408
NW_021161680.1 12560 24.27% 1123
NW_021161686.1 53190 39.32% 4752
NW_021161694.1 9620 21.15% 866
NW_021161695.1 22970 42.98% 2019
NW_021161696.1 11700 22.06% 1014
NW_021161699.1 25154 52.02% 2280
NW_021161700.1 3000 5.66% 260
NW_021161713.1 7880 14.63% 668
NW_021161715.1 4280 7.87% 371
NW_021161718.1 25180 46.22% 2305
NW_021161725.1 15740 50.02% 1397
NW_021161737.1 18330 32.82% 1570
NW_021161743.1 9900 17.68% 876
NW_021161747.1 2570 4.56% 230
NW_021161754.1 37680 65.88% 3451
NW_021161759.1 5370 9.35% 477
NW_021161767.1 28820 28.23% 2465
NW_021161769.1 15530 26.78% 1340
NW_021161772.1 15500 20.97% 1374
NW_021161784.1 3878 75.33% 341
NW_021161790.1 34117 56.53% 3089
NW_021161794.1 8520 14.10% 728
NW_021161796.1 12300 20.36% 1028
NW_021161798.1 13390 28.44% 1168
NW_021161830.1 23930 53.47% 2078
NW_021161832.1 10060 15.87% 877
NW_021161839.1 11960 18.68% 1044
NW_021161842.1 27120 41.57% 2273
NW_021161843.1 16550 25.41% 1412
NW_021161845.1 44230 67.64% 4017
NW_021161850.1 862421 77.19% 79753
NW_021161853.1 27210 41.23% 2514
NW_021161857.1 24600 37.08% 2155
NW_021161862.1 16630 25.13% 1450
NW_021161876.1 37510 54.94% 3282
NW_021161878.1 26740 39.33% 2406
NW_021161881.1 33152 55.04% 2921
NW_021161888.1 37960 54.67% 3439
NW_021161902.1 31030 47.88% 2754
NW_021161927.1 21730 29.05% 1877
NW_021161934.1 36830 48.90% 3240
NW_021161939.1 41560 54.87% 3762
NW_021161954.1 24630 31.93% 2228
NW_021161955.1 20670 26.67% 1826
NW_021161956.1 36240 47.45% 3359
NW_021161958.1 43430 55.30% 3870
NW_021161961.1 39050 49.94% 3420
NW_021161962.1 8100 10.14% 703
NW_021161965.1 21670 27.42% 1881
NW_021161996.1 17340 20.17% 1518
NW_021162004.1 4790 16.87% 428
NW_021162007.1 27740 31.57% 2400
NW_021162009.1 63780 73.16% 5930
NW_021162025.1 24250 27.20% 2154
NW_021162035.1 18800 20.15% 1596
NW_021162047.1 30420 31.79% 2568
NW_021162055.1 44190 44.42% 3975
NW_021162083.1 73070 42.41% 6173
NW_021162091.1 39850 35.14% 3744
NW_021162100.1 34350 27.33% 3125
NW_021162108.1 23280 73.04% 2208
NW_021162157.1 11200 18.59% 993
NW_021162185.1 250 2.83% 23
NW_021162208.1 20500 8.23% 1782
NW_021162222.1 22510 59.46% 1920
NW_021162226.1 12780 29.28% 1091
NW_021162246.1 84380 79.88% 7658
NW_021162251.1 54410 76.19% 5033
NW_021162253.1 1600 5.11% 139
NW_021162263.1 2200 8.30% 197
NW_021162265.1 24450 63.26% 2230
NW_021162274.1 76580 75.42% 7055
NW_021162277.1 10000 40.20% 868
NW_021162460.1 610 8.11% 53
NW_021162463.1 1840 24.37% 167
NW_021162495.1 2080 31.57% 182
NW_021162553.1 1950 22.51% 168
NW_021162593.1 1750 18.82% 147
NW_021162599.1 8295 88.48% 794
NW_021162621.1 3350 34.29% 290
NW_021162643.1 21005 82.65% 1917
NW_021162814.1 2590 20.89% 233
NW_021162871.1 4070 29.32% 357
NW_021162949.1 260 1.73% 22
NW_021163002.1 780 4.92% 70
2533 contigs with no values (90119066 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 252368513 1 120 10.52 10
global segment-length histogram

Files

Filename Size md5
STRd_D2_Matrix_MSN.bw 1.4 GB f8fc548e6dd0cdf52c925bad35b4daed
genomic_resource.yaml 1.13 KB b416b71a00992fb4fb535ba107048cb9
statistics/