Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STRd_D2_StrioMat_Hybrid_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRd_D2_StrioMat_Hybrid_MSN cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRd_D2_StrioMat_Hybrid_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STRd_D2_StrioMat_Hybrid_MSN float

johansen2025Crossspecies_atac_macaque_STRd_D2_StrioMat_Hybrid_MSN

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STRd_D2_StrioMat_Hybrid_MSN [0.0492, 95.3]
n
1,422,407,059
mean
0.149
sd
0.335

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 142240705947.87% 117339535
NC_005943.1 1970 11.89% 185
NC_027914.1 1736540 14.77% 148073
NC_041754.1 120202230 53.75% 9942470
NC_041755.1 97878420 49.89% 8041320
NC_041756.1 94657000 51.09% 7796986
NC_041757.1 82744390 48.68% 6794797
NC_041758.1 85172720 45.47% 6956973
NC_041759.1 85238900 47.60% 6977919
NC_041760.1 90199100 53.10% 7463800
NC_041761.1 69871280 47.96% 5728323
NC_041762.1 68266270 50.90% 5611742
NC_041763.1 56558810 56.83% 4728262
NC_041764.1 68128880 51.20% 5635375
NC_041765.1 63605576 48.91% 5201441
NC_041766.1 55499460 51.04% 4576042
NC_041767.1 67927820 53.05% 5633119
NC_041768.1 57005050 50.32% 4698538
NC_041769.1 47125214 59.18% 3966584
NC_041770.1 44338760 46.46% 3627037
NC_041771.1 36427080 48.91% 2980972
NC_041772.1 33298860 57.10% 2831006
NC_041773.1 44360945 57.51% 3715953
NC_041774.1 48882340 31.87% 4005870
NW_021160097.1 560 1.51% 47
NW_021160098.1 2840 7.10% 251
NW_021160099.1 1600 3.96% 140
NW_021160102.1 5160 10.28% 424
NW_021160105.1 2100 3.83% 182
NW_021160106.1 9300 16.74% 807
NW_021160107.1 2360 4.25% 202
NW_021160109.1 7830 9.51% 669
NW_021160110.1 19530 16.53% 1633
NW_021160111.1 24325 18.29% 2054
NW_021160113.1 53690 46.15% 4659
NW_021160114.1 12450 18.89% 1040
NW_021160116.1 1200 3.39% 107
NW_021160121.1 3180 3.69% 275
NW_021160122.1 9440 10.26% 807
NW_021160123.1 5720 10.81% 480
NW_021160125.1 220 0.87% 18
NW_021160136.1 4450 7.45% 377
NW_021160140.1 8220 6.31% 716
NW_021160141.1 9710 7.24% 834
NW_021160142.1 22340 46.72% 1876
NW_021160144.1 175909 14.30% 15353
NW_021160145.1 1920 7.14% 151
NW_021160147.1 3000 9.99% 259
NW_021160148.1 6190 18.04% 520
NW_021160150.1 3400 9.07% 298
NW_021160155.1 4000 7.34% 347
NW_021160158.1 5680 7.54% 472
NW_021160159.1 10090 11.76% 859
NW_021160161.1 101972 13.81% 8513
NW_021160167.1 1230 3.25% 107
NW_021160168.1 790 1.90% 67
NW_021160175.1 80200 43.32% 6413
NW_021160179.1 3330 8.57% 285
NW_021160182.1 10780 18.56% 890
NW_021160184.1 2710 4.42% 233
NW_021160185.1 2420 3.90% 216
NW_021160186.1 11070 17.17% 933
NW_021160187.1 3110 4.07% 285
NW_021160188.1 6080 7.33% 513
NW_021160189.1 6740 6.65% 580
NW_021160190.1 3660 10.24% 300
NW_021160191.1 2130 7.65% 183
NW_021160193.1 310 0.99% 30
NW_021160196.1 13910 30.17% 1145
NW_021160197.1 4410 8.51% 381
NW_021160199.1 3620 6.47% 300
NW_021160200.1 3480 5.90% 297
NW_021160201.1 11760 19.14% 971
NW_021160202.1 4950 7.56% 426
NW_021160203.1 10030 13.89% 833
NW_021160204.1 7650 10.50% 640
NW_021160205.1 3120 4.26% 285
NW_021160206.1 5490 6.55% 454
NW_021160207.1 6900 6.98% 591
NW_021160209.1 30210 4.51% 2537
NW_021160211.1 10460 7.85% 878
NW_021160220.1 15510 23.25% 1313
NW_021160221.1 5210 7.35% 463
NW_021160222.1 2920 3.82% 253
NW_021160223.1 18980 22.78% 1609
NW_021160225.1 8550 15.88% 699
NW_021160226.1 6190 17.18% 524
NW_021160228.1 2970 6.21% 251
NW_021160229.1 4420 9.21% 372
NW_021160231.1 3890 7.14% 331
NW_021160233.1 5800 8.97% 488
NW_021160234.1 19770 30.16% 1710
NW_021160236.1 6400 8.23% 537
NW_021160237.1 16140 18.83% 1344
NW_021160238.1 17490 16.75% 1472
NW_021160239.1 2000 6.86% 167
NW_021160242.1 2500 8.46% 215
NW_021160243.1 750 2.38% 68
NW_021160244.1 20780 59.00% 1857
NW_021160245.1 2290 5.23% 195
NW_021160248.1 2250 3.01% 206
NW_021160249.1 7220 9.54% 583
NW_021160250.1 1980 3.08% 167
NW_021160251.1 12500 14.81% 1034
NW_021160252.1 15400 17.37% 1278
NW_021160255.1 2770 9.87% 227
NW_021160263.1 2490 4.73% 221
NW_021160266.1 1960 2.61% 183
NW_021160268.1 2560 3.78% 230
NW_021160270.1 4650 13.35% 390
NW_021160271.1 1710 4.92% 140
NW_021160272.1 4520 12.92% 378
NW_021160273.1 2000 4.98% 169
NW_021160277.1 860 1.92% 74
NW_021160278.1 6800 12.22% 582
NW_021160279.1 7750 11.74% 645
NW_021160282.1 22030 17.81% 1873
NW_021160284.1 2340 6.73% 201
NW_021160285.1 2760 6.19% 244
NW_021160291.1 1160 2.56% 102
NW_021160293.1 8880 16.81% 754
NW_021160294.1 9480 11.91% 782
NW_021160295.1 7550 9.15% 640
NW_021160297.1 5870 10.44% 488
NW_021160298.1 3530 12.96% 290
NW_021160300.1 12460 20.01% 1046
NW_021160305.1 890 2.21% 80
NW_021160306.1 3300 8.36% 277
NW_021160307.1 8570 16.27% 704
NW_021160308.1 5450 10.11% 435
NW_021160310.1 21350 36.64% 1819
NW_021160311.1 15940 20.24% 1342
NW_021160312.1 12240 13.84% 1049
NW_021160313.1 11200 11.84% 937
NW_021160319.1 4560 10.50% 357
NW_021160320.1 5340 10.16% 457
NW_021160324.1 10060 15.81% 814
NW_021160325.1 5840 8.96% 499
NW_021160326.1 5610 8.61% 488
NW_021160327.1 8350 12.66% 715
NW_021160328.1 15670 24.75% 1351
NW_021160329.1 5850 10.89% 491
NW_021160338.1 2180 5.81% 191
NW_021160339.1 1030 2.67% 93
NW_021160341.1 3180 6.87% 277
NW_021160347.1 16230 9.82% 1373
NW_021160353.1 4930 11.97% 415
NW_021160354.1 2480 5.91% 223
NW_021160355.1 5640 10.15% 485
NW_021160356.1 4240 5.56% 376
NW_021160357.1 1520 4.99% 135
NW_021160358.1 4910 12.44% 403
NW_021160359.1 7540 18.37% 635
NW_021160361.1 2380 5.06% 198
NW_021160362.1 3000 5.59% 262
NW_021160363.1 7750 12.72% 653
NW_021160364.1 7650 12.38% 641
NW_021160365.1 9350 14.07% 803
NW_021160366.1 11910 16.71% 993
NW_021160367.1 18230 23.86% 1497
NW_021160368.1 2840 3.60% 254
NW_021160369.1 2340 2.86% 208
NW_021160370.1 14490 16.19% 1219
NW_021160371.1 4900 5.42% 430
NW_021160372.1 21500 15.99% 1837
NW_021160373.1 10760 18.50% 911
NW_021160374.1 14030 11.29% 1210
NW_021160375.1 38180 20.77% 3116
NW_021160376.1 87880 10.19% 7445
NW_021160381.1 690 1.42% 60
NW_021160383.1 21277 30.84% 1722
NW_021160384.1 2280 2.86% 209
NW_021160401.1 1010 6.21% 90
NW_021160410.1 7320 44.48% 648
NW_021160417.1 2580 4.56% 210
NW_021160452.1 1630 9.63% 141
NW_021160482.1 340 1.97% 31
NW_021160484.1 3260 18.74% 267
NW_021160495.1 95320 11.57% 8092
NW_021160514.1 1820 10.10% 151
NW_021160523.1 1170 6.47% 94
NW_021160525.1 1180 6.50% 108
NW_021160535.1 3040 16.59% 235
NW_021160549.1 2500 13.47% 220
NW_021160573.1 5410 28.42% 454
NW_021160589.1 150 0.78% 15
NW_021160606.1 70370 7.00% 5937
NW_021160623.1 660 3.34% 60
NW_021160625.1 120 0.61% 12
NW_021160629.1 110 0.55% 11
NW_021160635.1 250 1.24% 22
NW_021160655.1 3140 15.26% 260
NW_021160656.1 2770 13.54% 245
NW_021160678.1 350 1.68% 34
NW_021160682.1 11275 54.40% 941
NW_021160688.1 4290 21.01% 361
NW_021160701.1 6776 31.94% 604
NW_021160725.1 900 4.16% 75
NW_021160726.1 13740 63.18% 1288
NW_021160734.1 710 3.26% 61
NW_021160737.1 20 0.09% 2
NW_021160757.1 60 0.27% 6
NW_021160770.1 12960 57.26% 1217
NW_021160772.1 2300 10.14% 205
NW_021160805.1 5250 22.39% 427
NW_021160821.1 430 1.80% 37
NW_021160827.1 54280 7.40% 4623
NW_021160832.1 460 1.91% 40
NW_021160834.1 2220 9.21% 200
NW_021160835.1 60 0.35% 6
NW_021160848.1 220 0.91% 18
NW_021160868.1 40 0.16% 4
NW_021160890.1 2540 10.06% 214
NW_021160903.1 6030 22.77% 492
NW_021160919.1 2400 9.21% 203
NW_021160925.1 520 1.99% 48
NW_021160946.1 2740 10.35% 232
NW_021160955.1 1680 6.33% 149
NW_021160961.1 1700 6.35% 155
NW_021160976.1 4760 17.49% 390
NW_021160983.1 240 0.88% 19
NW_021161026.1 140 0.50% 14
NW_021161038.1 2000 7.39% 169
NW_021161041.1 1260 4.42% 108
NW_021161043.1 310 1.06% 29
NW_021161046.1 4500 15.25% 397
NW_021161062.1 560 1.89% 50
NW_021161066.1 6550 21.95% 538
NW_021161106.1 4600 15.01% 370
NW_021161107.1 1150 3.74% 99
NW_021161113.1 5450 16.16% 439
NW_021161114.1 5980 19.38% 538
NW_021161131.1 180 0.58% 18
NW_021161133.1 4980 3.35% 423
NW_021161138.1 330 1.06% 32
NW_021161152.1 2850 9.06% 232
NW_021161164.1 3180 9.84% 283
NW_021161166.1 5410 16.65% 448
NW_021161184.1 1020 3.45% 89
NW_021161201.1 2250 6.78% 187
NW_021161211.1 3180 9.53% 279
NW_021161213.1 550 1.65% 51
NW_021161224.1 6510 19.31% 556
NW_021161226.1 4210 12.63% 359
NW_021161241.1 430 1.25% 43
NW_021161247.1 30 0.09% 2
NW_021161253.1 200 0.58% 14
NW_021161261.1 1170 3.35% 101
NW_021161269.1 6950 19.80% 573
NW_021161274.1 20 0.06% 2
NW_021161282.1 13730 35.32% 1162
NW_021161303.1 1260 3.50% 113
NW_021161305.1 290 0.80% 24
NW_021161307.1 1610 6.07% 135
NW_021161312.1 330 0.92% 29
NW_021161320.1 7790 7.93% 654
NW_021161336.1 3390 9.20% 291
NW_021161338.1 1080 2.90% 98
NW_021161340.1 1780 4.84% 156
NW_021161348.1 4170 11.14% 342
NW_021161355.1 7320 18.95% 608
NW_021161360.1 600 1.60% 51
NW_021161364.1 3430 8.98% 296
NW_021161377.1 11790 29.65% 968
NW_021161379.1 230 0.60% 22
NW_021161380.1 170 0.53% 15
NW_021161385.1 760 1.96% 62
NW_021161392.1 8020 20.50% 704
NW_021161394.1 2450 6.31% 209
NW_021161396.1 310 0.79% 26
NW_021161399.1 2300 10.49% 204
NW_021161404.1 900 2.28% 81
NW_021161413.1 2010 5.07% 176
NW_021161421.1 550 1.38% 51
NW_021161422.1 590 1.49% 52
NW_021161427.1 2890 7.21% 233
NW_021161433.1 330 0.82% 32
NW_021161437.1 710 2.36% 66
NW_021161446.1 1190 2.91% 108
NW_021161463.1 90 0.22% 8
NW_021161468.1 2060 4.91% 182
NW_021161470.1 390 0.93% 35
NW_021161483.1 80 0.19% 8
NW_021161486.1 4560 10.71% 358
NW_021161494.1 940 2.19% 80
NW_021161497.1 850 1.98% 68
NW_021161505.1 4790 11.12% 404
NW_021161507.1 6440 14.88% 538
NW_021161508.1 11170 25.88% 915
NW_021161519.1 6520 14.87% 551
NW_021161520.1 3800 8.82% 336
NW_021161523.1 2220 5.13% 190
NW_021161525.1 8970 20.37% 729
NW_021161526.1 4280 9.72% 372
NW_021161532.1 720 1.62% 62
NW_021161535.1 710 1.59% 62
NW_021161537.1 12620 28.45% 1066
NW_021161545.1 14640 32.77% 1315
NW_021161552.1 900 2.12% 82
NW_021161554.1 4260 9.43% 359
NW_021161561.1 7020 15.54% 586
NW_021161562.1 9670 21.27% 817
NW_021161567.1 1930 4.24% 171
NW_021161570.1 70 0.15% 7
NW_021161582.1 7400 16.11% 622
NW_021161585.1 9720 21.09% 803
NW_021161590.1 20110 43.71% 1708
NW_021161593.1 15600 33.52% 1305
NW_021161596.1 56620 10.50% 4724
NW_021161601.1 4560 9.70% 384
NW_021161608.1 1970 4.22% 169
NW_021161609.1 600 1.28% 52
NW_021161614.1 2570 5.39% 211
NW_021161616.1 5400 11.29% 486
NW_021161617.1 350 0.73% 31
NW_021161627.1 3550 10.62% 291
NW_021161633.1 21220 42.94% 1756
NW_021161642.1 3490 7.01% 292
NW_021161648.1 20730 40.74% 1790
NW_021161679.1 4270 8.19% 350
NW_021161680.1 3660 7.07% 302
NW_021161686.1 18590 13.74% 1581
NW_021161694.1 2150 4.73% 184
NW_021161695.1 4750 8.89% 397
NW_021161696.1 2580 4.86% 234
NW_021161699.1 8684 17.96% 694
NW_021161700.1 390 0.74% 36
NW_021161713.1 1100 2.04% 101
NW_021161715.1 630 1.16% 58
NW_021161718.1 10700 19.64% 863
NW_021161725.1 2870 9.12% 243
NW_021161737.1 3600 6.45% 311
NW_021161743.1 2110 3.77% 186
NW_021161747.1 300 0.53% 29
NW_021161754.1 16110 28.17% 1375
NW_021161759.1 920 1.60% 82
NW_021161767.1 5370 5.26% 456
NW_021161769.1 3580 6.17% 316
NW_021161772.1 3940 5.33% 349
NW_021161784.1 1200 23.31% 96
NW_021161790.1 12860 21.31% 1060
NW_021161794.1 1270 2.10% 108
NW_021161796.1 1940 3.21% 179
NW_021161798.1 3580 7.60% 298
NW_021161830.1 4410 9.85% 381
NW_021161832.1 2330 3.68% 205
NW_021161839.1 2340 3.65% 207
NW_021161842.1 4370 6.70% 398
NW_021161843.1 3110 4.77% 259
NW_021161845.1 18300 27.98% 1552
NW_021161850.1 378501 33.88% 31055
NW_021161853.1 10750 16.29% 919
NW_021161857.1 5280 7.96% 454
NW_021161862.1 2410 3.64% 207
NW_021161876.1 9110 13.34% 751
NW_021161878.1 7970 11.72% 682
NW_021161881.1 9090 15.09% 753
NW_021161888.1 12900 18.58% 1114
NW_021161902.1 9280 14.32% 764
NW_021161927.1 3880 5.19% 337
NW_021161934.1 8590 11.41% 709
NW_021161939.1 14440 19.06% 1213
NW_021161954.1 6600 8.56% 567
NW_021161955.1 5830 7.52% 469
NW_021161956.1 16010 20.96% 1348
NW_021161958.1 13190 16.80% 1120
NW_021161961.1 8230 10.52% 686
NW_021161962.1 1560 1.95% 144
NW_021161965.1 3750 4.74% 323
NW_021161996.1 4320 5.03% 362
NW_021162004.1 870 3.06% 73
NW_021162007.1 5920 6.74% 491
NW_021162009.1 33130 38.00% 2827
NW_021162025.1 6410 7.19% 551
NW_021162035.1 2440 2.62% 224
NW_021162047.1 5470 5.72% 484
NW_021162055.1 13140 13.21% 1132
NW_021162083.1 13040 7.57% 1158
NW_021162091.1 18170 16.02% 1526
NW_021162100.1 14180 11.28% 1285
NW_021162108.1 13470 42.26% 1079
NW_021162157.1 2240 3.72% 200
NW_021162185.1 40 0.45% 4
NW_021162208.1 3060 1.23% 278
NW_021162222.1 3100 8.19% 277
NW_021162226.1 1810 4.15% 169
NW_021162246.1 30010 28.41% 2432
NW_021162251.1 21990 30.79% 1789
NW_021162253.1 160 0.51% 16
NW_021162263.1 630 2.38% 57
NW_021162265.1 9250 23.93% 765
NW_021162274.1 32660 32.16% 2722
NW_021162277.1 1940 7.80% 174
NW_021162460.1 40 0.53% 3
NW_021162463.1 630 8.35% 58
NW_021162495.1 540 8.20% 43
NW_021162553.1 310 3.58% 28
NW_021162593.1 240 2.58% 20
NW_021162599.1 4540 48.43% 374
NW_021162621.1 830 8.50% 69
NW_021162643.1 8525 33.54% 705
NW_021162814.1 420 3.39% 39
NW_021162871.1 1270 9.15% 100
NW_021162949.1 20 0.13% 2
NW_021163002.1 110 0.69% 10
2535 contigs with no values (90175072 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117339535 1 150 12.12 10
global segment-length histogram

Files

Filename Size md5
STRd_D2_StrioMat_Hybrid_MSN.bw 709.81 MB 95955014171b905804dcd327da905052
genomic_resource.yaml 1.17 KB 04ebc16f1f57430c886909b3444e4910
statistics/