Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STRd_D2_Striosome_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRd_D2_Striosome_MSN cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRd_D2_Striosome_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STRd_D2_Striosome_MSN float

johansen2025Crossspecies_atac_macaque_STRd_D2_Striosome_MSN

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STRd_D2_Striosome_MSN [0.0115, 97.1]
n
2,245,870,990
mean
0.0888
sd
0.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 224587099075.58% 198892687
NC_005943.1 2470 14.91% 240
NC_027914.1 4516360 38.43% 367859
NC_041754.1 182166210 81.46% 16248021
NC_041755.1 156327450 79.68% 13831743
NC_041756.1 148840177 80.33% 13215825
NC_041757.1 134169660 78.94% 11849240
NC_041758.1 144177530 76.97% 12592398
NC_041759.1 139859530 78.10% 12296154
NC_041760.1 136927620 80.61% 12206912
NC_041761.1 113176030 77.69% 9974558
NC_041762.1 106158080 79.15% 9420255
NC_041763.1 80892050 81.28% 7313019
NC_041764.1 105538910 79.31% 9385816
NC_041765.1 103094316 79.28% 9079727
NC_041766.1 86577990 79.62% 7676887
NC_041767.1 102716630 80.21% 9167845
NC_041768.1 89015160 78.58% 7898546
NC_041769.1 65801984 82.64% 5987152
NC_041770.1 73498240 77.02% 6469025
NC_041771.1 58496740 78.55% 5158087
NC_041772.1 45689120 78.35% 4182978
NC_041773.1 63476465 82.29% 5740150
NC_041774.1 98089910 63.95% 8261292
NW_021160097.1 1070 2.89% 91
NW_021160098.1 6860 17.15% 589
NW_021160099.1 3420 8.46% 295
NW_021160102.1 11490 22.89% 966
NW_021160105.1 5000 9.11% 423
NW_021160106.1 18080 32.55% 1570
NW_021160107.1 5910 10.63% 510
NW_021160109.1 18220 22.14% 1525
NW_021160110.1 38620 32.69% 3278
NW_021160111.1 58050 43.64% 4764
NW_021160113.1 76490 65.75% 6947
NW_021160114.1 23030 34.94% 1999
NW_021160116.1 3590 10.14% 296
NW_021160121.1 9150 10.61% 761
NW_021160122.1 22010 23.91% 1849
NW_021160123.1 11930 22.54% 1027
NW_021160125.1 920 3.64% 77
NW_021160136.1 11130 18.63% 933
NW_021160140.1 19650 15.08% 1656
NW_021160141.1 27360 20.39% 2308
NW_021160142.1 31690 66.28% 2855
NW_021160144.1 450009 36.59% 36440
NW_021160145.1 4650 17.30% 396
NW_021160147.1 7790 25.93% 645
NW_021160148.1 10710 31.21% 945
NW_021160150.1 6710 17.89% 594
NW_021160155.1 8460 15.51% 723
NW_021160158.1 11420 15.15% 970
NW_021160159.1 25410 29.62% 2096
NW_021160161.1 220002 29.79% 18633
NW_021160167.1 3500 9.25% 302
NW_021160168.1 2200 5.28% 186
NW_021160175.1 128210 69.25% 11327
NW_021160179.1 8770 22.56% 722
NW_021160182.1 19260 33.16% 1676
NW_021160184.1 7300 11.91% 638
NW_021160185.1 6290 10.12% 545
NW_021160186.1 24200 37.52% 2098
NW_021160187.1 8920 11.67% 757
NW_021160188.1 13190 15.90% 1092
NW_021160189.1 18160 17.92% 1541
NW_021160190.1 8900 24.91% 712
NW_021160191.1 5210 18.70% 443
NW_021160193.1 960 3.08% 88
NW_021160196.1 24985 54.19% 2185
NW_021160197.1 11060 21.35% 937
NW_021160199.1 9780 17.49% 787
NW_021160200.1 11030 18.70% 950
NW_021160201.1 22080 35.93% 1907
NW_021160202.1 11050 16.88% 956
NW_021160203.1 22290 30.87% 1893
NW_021160204.1 20810 28.57% 1751
NW_021160205.1 7170 9.79% 609
NW_021160206.1 12740 15.21% 1068
NW_021160207.1 22460 22.73% 1888
NW_021160209.1 63530 9.48% 5372
NW_021160211.1 20320 15.24% 1733
NW_021160220.1 26150 39.19% 2314
NW_021160221.1 15150 21.38% 1241
NW_021160222.1 6990 9.15% 579
NW_021160223.1 31830 38.20% 2821
NW_021160225.1 17610 32.71% 1522
NW_021160226.1 13690 38.00% 1185
NW_021160228.1 6520 13.63% 561
NW_021160229.1 13380 27.89% 1103
NW_021160231.1 10460 19.19% 866
NW_021160233.1 10780 16.68% 945
NW_021160234.1 27050 41.27% 2508
NW_021160236.1 15100 19.41% 1263
NW_021160237.1 30970 36.13% 2592
NW_021160238.1 30000 28.72% 2597
NW_021160239.1 5370 18.41% 457
NW_021160242.1 5360 18.14% 461
NW_021160243.1 2210 7.01% 184
NW_021160244.1 24570 69.76% 2338
NW_021160245.1 5620 12.84% 471
NW_021160248.1 7230 9.67% 619
NW_021160249.1 15230 20.12% 1304
NW_021160250.1 4760 7.40% 408
NW_021160251.1 24440 28.95% 2040
NW_021160252.1 31200 35.20% 2661
NW_021160255.1 5210 18.56% 459
NW_021160263.1 7900 15.01% 652
NW_021160266.1 5940 7.92% 515
NW_021160268.1 8390 12.39% 709
NW_021160270.1 7890 22.65% 691
NW_021160271.1 3840 11.05% 335
NW_021160272.1 6500 18.58% 592
NW_021160273.1 5650 14.05% 473
NW_021160277.1 2230 4.97% 192
NW_021160278.1 15080 27.10% 1252
NW_021160279.1 17750 26.90% 1492
NW_021160282.1 41740 33.74% 3600
NW_021160284.1 4510 12.96% 392
NW_021160285.1 6560 14.71% 559
NW_021160291.1 3700 8.17% 291
NW_021160293.1 17680 33.47% 1525
NW_021160294.1 21050 26.43% 1772
NW_021160295.1 18310 22.18% 1547
NW_021160297.1 13580 24.15% 1160
NW_021160298.1 7730 28.37% 679
NW_021160300.1 22830 36.66% 2035
NW_021160305.1 2730 6.77% 233
NW_021160306.1 7060 17.89% 586
NW_021160307.1 18350 34.83% 1534
NW_021160308.1 12230 22.68% 1010
NW_021160310.1 30860 52.97% 2774
NW_021160311.1 32158 40.84% 2746
NW_021160312.1 25090 28.38% 2161
NW_021160313.1 25150 26.58% 2198
NW_021160319.1 11520 26.52% 934
NW_021160320.1 11660 22.19% 981
NW_021160324.1 20750 32.62% 1771
NW_021160325.1 13340 20.48% 1114
NW_021160326.1 13200 20.26% 1101
NW_021160327.1 17830 27.02% 1511
NW_021160328.1 24040 37.96% 2172
NW_021160329.1 12110 22.55% 1031
NW_021160338.1 6700 17.86% 533
NW_021160339.1 2820 7.32% 220
NW_021160341.1 9040 19.52% 753
NW_021160347.1 38620 23.37% 3279
NW_021160353.1 10370 25.18% 871
NW_021160354.1 5260 12.53% 437
NW_021160355.1 14290 25.72% 1182
NW_021160356.1 10840 14.20% 921
NW_021160357.1 3740 12.28% 317
NW_021160358.1 11050 28.01% 925
NW_021160359.1 13880 33.81% 1214
NW_021160361.1 5040 10.71% 423
NW_021160362.1 8240 15.35% 685
NW_021160363.1 17370 28.51% 1476
NW_021160364.1 16070 26.00% 1386
NW_021160365.1 19540 29.41% 1694
NW_021160366.1 25500 35.79% 2182
NW_021160367.1 32440 42.47% 2823
NW_021160368.1 6870 8.70% 584
NW_021160369.1 7200 8.80% 638
NW_021160370.1 31510 35.21% 2706
NW_021160371.1 13390 14.81% 1113
NW_021160372.1 46720 34.75% 3931
NW_021160373.1 22130 38.06% 1927
NW_021160374.1 34060 27.40% 2822
NW_021160375.1 82330 44.79% 7127
NW_021160376.1 224040 25.97% 18202
NW_021160381.1 1820 3.74% 155
NW_021160383.1 36197 52.46% 3141
NW_021160384.1 8510 10.69% 718
NW_021160401.1 2540 15.61% 218
NW_021160410.1 9830 59.74% 909
NW_021160417.1 5540 9.79% 441
NW_021160452.1 3750 22.15% 308
NW_021160482.1 730 4.23% 64
NW_021160484.1 6610 37.99% 573
NW_021160495.1 207930 25.24% 17110
NW_021160514.1 3660 20.31% 306
NW_021160523.1 2560 14.16% 212
NW_021160525.1 2980 16.43% 245
NW_021160535.1 5890 32.14% 485
NW_021160549.1 3900 21.01% 352
NW_021160573.1 9760 51.27% 888
NW_021160589.1 320 1.66% 28
NW_021160606.1 160170 15.92% 13319
NW_021160623.1 2160 10.92% 183
NW_021160625.1 440 2.22% 38
NW_021160629.1 620 3.12% 49
NW_021160635.1 1080 5.38% 96
NW_021160655.1 7630 37.09% 613
NW_021160656.1 5930 28.98% 503
NW_021160678.1 1150 5.53% 95
NW_021160682.1 16025 77.32% 1484
NW_021160688.1 7430 36.39% 658
NW_021160701.1 11486 54.14% 1063
NW_021160725.1 2290 10.58% 192
NW_021160726.1 16460 75.69% 1577
NW_021160734.1 1690 7.76% 141
NW_021160737.1 40 0.18% 4
NW_021160757.1 380 1.72% 33
NW_021160770.1 16270 71.89% 1553
NW_021160772.1 4830 21.30% 399
NW_021160805.1 9470 40.39% 814
NW_021160821.1 1420 5.94% 124
NW_021160827.1 88210 12.02% 7881
NW_021160832.1 1150 4.78% 95
NW_021160834.1 5530 22.93% 451
NW_021160835.1 90 0.53% 9
NW_021160848.1 700 2.88% 60
NW_021160868.1 200 0.82% 20
NW_021160890.1 6240 24.72% 508
NW_021160903.1 10536 39.78% 932
NW_021160919.1 4320 16.58% 378
NW_021160925.1 1590 6.10% 129
NW_021160946.1 5730 21.64% 486
NW_021160955.1 4570 17.21% 381
NW_021160961.1 4200 15.70% 344
NW_021160976.1 10000 36.74% 804
NW_021160983.1 530 1.94% 41
NW_021160986.1 190 0.70% 17
NW_021161026.1 380 1.36% 36
NW_021161033.1 390 1.36% 34
NW_021161038.1 4300 15.89% 374
NW_021161041.1 4470 15.68% 367
NW_021161043.1 1050 3.60% 89
NW_021161046.1 6810 23.08% 613
NW_021161062.1 2030 6.85% 178
NW_021161066.1 13070 43.80% 1110
NW_021161106.1 10530 34.36% 889
NW_021161107.1 2710 8.81% 234
NW_021161113.1 11510 34.13% 961
NW_021161114.1 9630 31.22% 891
NW_021161131.1 360 1.15% 33
NW_021161133.1 13320 8.96% 1119
NW_021161138.1 1050 3.37% 87
NW_021161152.1 6550 20.81% 542
NW_021161164.1 7590 23.48% 668
NW_021161166.1 12640 38.89% 1016
NW_021161184.1 2220 7.51% 199
NW_021161201.1 4370 13.16% 393
NW_021161211.1 6910 20.71% 589
NW_021161213.1 1510 4.54% 131
NW_021161224.1 11890 35.28% 1099
NW_021161226.1 7610 22.83% 683
NW_021161241.1 2000 5.83% 172
NW_021161247.1 110 0.32% 10
NW_021161253.1 360 1.04% 33
NW_021161261.1 3800 10.87% 329
NW_021161269.1 14360 40.92% 1194
NW_021161274.1 180 0.52% 16
NW_021161282.1 21300 54.79% 1888
NW_021161303.1 3790 10.53% 316
NW_021161305.1 1160 3.22% 97
NW_021161307.1 3200 12.06% 277
NW_021161312.1 690 1.93% 56
NW_021161320.1 17790 18.11% 1527
NW_021161336.1 7370 19.99% 637
NW_021161338.1 3670 9.87% 298
NW_021161340.1 3620 9.85% 304
NW_021161348.1 8370 22.36% 698
NW_021161355.1 15640 40.48% 1348
NW_021161360.1 1180 3.15% 107
NW_021161364.1 6770 17.73% 596
NW_021161377.1 21670 54.50% 1899
NW_021161379.1 710 1.85% 59
NW_021161380.1 770 2.42% 67
NW_021161385.1 1500 3.86% 129
NW_021161392.1 14270 36.48% 1239
NW_021161394.1 5270 13.57% 456
NW_021161396.1 960 2.46% 88
NW_021161399.1 5560 25.36% 475
NW_021161404.1 3520 8.93% 287
NW_021161413.1 6270 15.83% 519
NW_021161421.1 1770 4.45% 149
NW_021161422.1 990 2.50% 85
NW_021161427.1 5480 13.67% 470
NW_021161433.1 1510 3.73% 129
NW_021161437.1 2150 7.16% 188
NW_021161446.1 3600 8.80% 305
NW_021161463.1 290 0.70% 27
NW_021161468.1 5100 12.16% 432
NW_021161470.1 1010 2.41% 89
NW_021161483.1 240 0.57% 21
NW_021161486.1 8860 20.82% 754
NW_021161494.1 2320 5.42% 189
NW_021161497.1 2370 5.52% 203
NW_021161505.1 10380 24.09% 889
NW_021161507.1 12820 29.62% 1074
NW_021161508.1 20794 48.19% 1805
NW_021161519.1 15719 35.84% 1302
NW_021161520.1 5730 13.30% 525
NW_021161523.1 5980 13.82% 502
NW_021161525.1 17920 40.70% 1549
NW_021161526.1 9690 22.00% 808
NW_021161532.1 2230 5.02% 201
NW_021161535.1 2960 6.63% 245
NW_021161537.1 20305 45.78% 1845
NW_021161545.1 20709 46.35% 1951
NW_021161552.1 2810 6.61% 241
NW_021161554.1 11100 24.58% 916
NW_021161561.1 12470 27.60% 1047
NW_021161562.1 15650 34.42% 1407
NW_021161567.1 5000 10.98% 424
NW_021161570.1 280 0.62% 26
NW_021161582.1 16700 36.35% 1442
NW_021161585.1 18120 39.32% 1568
NW_021161590.1 28510 61.97% 2599
NW_021161593.1 27280 58.62% 2425
NW_021161596.1 107280 19.90% 9346
NW_021161601.1 10290 21.88% 866
NW_021161608.1 4180 8.95% 353
NW_021161609.1 1780 3.78% 154
NW_021161614.1 6240 13.08% 531
NW_021161616.1 10580 22.11% 911
NW_021161617.1 960 2.00% 85
NW_021161627.1 7040 21.06% 600
NW_021161633.1 35490 71.82% 3106
NW_021161642.1 8940 17.97% 752
NW_021161648.1 28220 55.46% 2641
NW_021161679.1 9500 18.22% 815
NW_021161680.1 7570 14.63% 647
NW_021161686.1 33930 25.08% 2940
NW_021161694.1 6020 13.23% 518
NW_021161695.1 12420 23.24% 1033
NW_021161696.1 5730 10.80% 502
NW_021161699.1 17184 35.54% 1501
NW_021161700.1 1270 2.39% 110
NW_021161713.1 3290 6.11% 284
NW_021161715.1 2030 3.73% 171
NW_021161718.1 17910 32.87% 1577
NW_021161725.1 9270 29.46% 764
NW_021161737.1 10630 19.03% 878
NW_021161743.1 4960 8.86% 438
NW_021161747.1 1340 2.38% 118
NW_021161754.1 27590 48.24% 2431
NW_021161759.1 2340 4.07% 195
NW_021161767.1 14920 14.61% 1245
NW_021161769.1 8000 13.80% 673
NW_021161772.1 9180 12.42% 778
NW_021161784.1 2468 47.94% 202
NW_021161790.1 24630 40.81% 2120
NW_021161794.1 3950 6.54% 324
NW_021161796.1 5760 9.54% 481
NW_021161798.1 7540 16.02% 649
NW_021161830.1 12640 28.25% 1037
NW_021161832.1 5400 8.52% 471
NW_021161839.1 6080 9.50% 547
NW_021161842.1 12230 18.75% 1020
NW_021161843.1 8210 12.60% 713
NW_021161845.1 32260 49.33% 2799
NW_021161850.1 634141 56.76% 54667
NW_021161853.1 19840 30.07% 1748
NW_021161857.1 13160 19.83% 1079
NW_021161862.1 8570 12.95% 708
NW_021161876.1 20490 30.01% 1685
NW_021161878.1 17230 25.34% 1515
NW_021161881.1 19750 32.79% 1687
NW_021161888.1 26400 38.02% 2308
NW_021161902.1 18890 29.15% 1608
NW_021161927.1 11140 14.89% 932
NW_021161934.1 22230 29.52% 1840
NW_021161939.1 28830 38.06% 2528
NW_021161954.1 15620 20.25% 1329
NW_021161955.1 12890 16.63% 1113
NW_021161956.1 28390 37.17% 2539
NW_021161958.1 29080 37.03% 2395
NW_021161961.1 21460 27.44% 1763
NW_021161962.1 4200 5.26% 353
NW_021161965.1 10580 13.39% 879
NW_021161996.1 10570 12.30% 859
NW_021162004.1 2330 8.21% 205
NW_021162007.1 14520 16.52% 1233
NW_021162009.1 51010 58.51% 4572
NW_021162025.1 14630 16.41% 1274
NW_021162035.1 8500 9.11% 733
NW_021162047.1 13990 14.62% 1168
NW_021162055.1 28410 28.55% 2438
NW_021162083.1 36710 21.31% 3036
NW_021162091.1 30970 27.31% 2795
NW_021162100.1 24470 19.47% 2212
NW_021162108.1 19950 62.59% 1769
NW_021162157.1 5350 8.88% 466
NW_021162185.1 170 1.93% 16
NW_021162208.1 8010 3.22% 711
NW_021162222.1 11220 29.64% 911
NW_021162226.1 5050 11.57% 434
NW_021162246.1 63590 60.20% 5269
NW_021162251.1 41380 57.94% 3484
NW_021162253.1 640 2.04% 62
NW_021162263.1 1190 4.49% 94
NW_021162265.1 17300 44.76% 1472
NW_021162274.1 56630 55.77% 4931
NW_021162277.1 5760 23.16% 489
NW_021162460.1 210 2.79% 20
NW_021162463.1 1030 13.64% 93
NW_021162495.1 1050 15.94% 77
NW_021162553.1 920 10.62% 82
NW_021162593.1 700 7.53% 59
NW_021162599.1 6845 73.01% 629
NW_021162621.1 1960 20.06% 166
NW_021162643.1 15985 62.90% 1404
NW_021162814.1 1250 10.08% 108
NW_021162871.1 2640 19.02% 228
NW_021162949.1 90 0.60% 8
NW_021163002.1 210 1.32% 20
2533 contigs with no values (90119066 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 198892687 1 130 11.29 10
global segment-length histogram

Files

Filename Size md5
STRd_D2_Striosome_MSN.bw 1.07 GB de1f57c1dceb18696e0cd06c1bb62329
genomic_resource.yaml 1.14 KB fd87e740f01f47ae80d717c2c806a3fb
statistics/