Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STRv_D1_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRv_D1_MSN cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRv_D1_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STRv_D1_MSN float

johansen2025Crossspecies_atac_macaque_STRv_D1_MSN

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STRv_D1_MSN [0.00827, 92.1]
n
2,378,822,776
mean
0.0804
sd
0.253

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 237882277680.06% 214501251
NC_005943.1 2840 17.15% 273
NC_027914.1 5136640 43.70% 419695
NC_041754.1 191618592 85.69% 17401253
NC_041755.1 165561700 84.39% 14930668
NC_041756.1 157445717 84.97% 14238399
NC_041757.1 142237200 83.69% 12796840
NC_041758.1 153659900 82.03% 13680822
NC_041759.1 148765240 83.07% 13345152
NC_041760.1 144681840 85.17% 13139591
NC_041761.1 120330100 82.60% 10807574
NC_041762.1 112451980 83.84% 10183280
NC_041763.1 84629600 85.04% 7776535
NC_041764.1 111775390 84.00% 10118523
NC_041765.1 109387136 84.12% 9830245
NC_041766.1 91679020 84.31% 8279128
NC_041767.1 107962156 84.31% 9801336
NC_041768.1 94003800 82.98% 8490179
NC_041769.1 68442314 85.95% 6318367
NC_041770.1 78124440 81.86% 7004085
NC_041771.1 61802320 82.99% 5547604
NC_041772.1 47517210 81.48% 4400823
NC_041773.1 66534745 86.25% 6112745
NC_041774.1 107468260 70.06% 9223811
NW_021160097.1 1670 4.51% 132
NW_021160098.1 8180 20.45% 706
NW_021160099.1 3920 9.69% 338
NW_021160102.1 11910 23.73% 1047
NW_021160105.1 6500 11.85% 559
NW_021160106.1 19730 35.52% 1706
NW_021160107.1 7480 13.46% 640
NW_021160109.1 21220 25.78% 1830
NW_021160110.1 44240 37.45% 3844
NW_021160111.1 65795 49.46% 5475
NW_021160113.1 78010 67.06% 7122
NW_021160114.1 27130 41.16% 2349
NW_021160116.1 4320 12.21% 360
NW_021160121.1 9560 11.09% 814
NW_021160122.1 24990 27.15% 2104
NW_021160123.1 13010 24.58% 1142
NW_021160125.1 1060 4.19% 90
NW_021160136.1 12440 20.82% 1040
NW_021160140.1 24500 18.81% 2075
NW_021160141.1 32080 23.91% 2678
NW_021160142.1 32560 68.10% 2952
NW_021160144.1 585109 47.57% 47207
NW_021160145.1 5060 18.83% 442
NW_021160147.1 7740 25.77% 637
NW_021160148.1 11580 33.74% 1032
NW_021160150.1 6410 17.09% 567
NW_021160155.1 9790 17.95% 860
NW_021160158.1 13030 17.29% 1105
NW_021160159.1 29730 34.65% 2471
NW_021160161.1 249492 33.79% 21517
NW_021160167.1 2930 7.74% 252
NW_021160168.1 2760 6.63% 239
NW_021160175.1 135950 73.43% 12186
NW_021160179.1 9820 25.26% 809
NW_021160182.1 20620 35.50% 1768
NW_021160184.1 8170 13.33% 703
NW_021160185.1 7730 12.44% 670
NW_021160186.1 27040 41.93% 2354
NW_021160187.1 8340 10.92% 694
NW_021160188.1 17280 20.83% 1472
NW_021160189.1 21330 21.05% 1796
NW_021160190.1 11810 33.05% 994
NW_021160191.1 5940 21.32% 506
NW_021160193.1 1440 4.62% 129
NW_021160196.1 25915 56.21% 2276
NW_021160197.1 13240 25.55% 1155
NW_021160199.1 11490 20.55% 933
NW_021160200.1 12050 20.42% 1011
NW_021160201.1 24530 39.92% 2145
NW_021160202.1 12980 19.82% 1138
NW_021160203.1 23240 32.19% 1974
NW_021160204.1 23650 32.47% 2008
NW_021160205.1 9240 12.61% 771
NW_021160206.1 14950 17.85% 1272
NW_021160207.1 24990 25.29% 2067
NW_021160209.1 72600 10.84% 6280
NW_021160211.1 22570 16.93% 1994
NW_021160220.1 25800 38.67% 2288
NW_021160221.1 17600 24.84% 1469
NW_021160222.1 8120 10.63% 685
NW_021160223.1 33570 40.29% 3004
NW_021160225.1 20820 38.68% 1838
NW_021160226.1 13760 38.19% 1182
NW_021160228.1 8320 17.39% 707
NW_021160229.1 16010 33.37% 1390
NW_021160231.1 13160 24.15% 1097
NW_021160233.1 11330 17.53% 994
NW_021160234.1 27820 42.44% 2590
NW_021160236.1 19260 24.76% 1621
NW_021160237.1 35580 41.51% 3095
NW_021160238.1 33440 32.02% 2924
NW_021160239.1 6890 23.63% 578
NW_021160242.1 5450 18.44% 472
NW_021160243.1 3070 9.74% 262
NW_021160244.1 25130 71.35% 2424
NW_021160245.1 5800 13.25% 486
NW_021160248.1 9200 12.31% 763
NW_021160249.1 16370 21.63% 1414
NW_021160250.1 5490 8.54% 457
NW_021160251.1 26450 31.33% 2221
NW_021160252.1 33990 38.35% 2946
NW_021160255.1 5986 21.32% 504
NW_021160263.1 9330 17.73% 782
NW_021160266.1 8460 11.28% 719
NW_021160268.1 11620 17.16% 976
NW_021160270.1 9060 26.01% 820
NW_021160271.1 4610 13.26% 413
NW_021160272.1 7300 20.86% 674
NW_021160273.1 6560 16.32% 544
NW_021160277.1 2550 5.69% 221
NW_021160278.1 17020 30.59% 1403
NW_021160279.1 20160 30.55% 1738
NW_021160282.1 40190 32.49% 3472
NW_021160284.1 5060 14.54% 448
NW_021160285.1 7670 17.20% 655
NW_021160291.1 4380 9.67% 370
NW_021160293.1 19410 36.74% 1689
NW_021160294.1 24550 30.83% 2094
NW_021160295.1 20140 24.40% 1669
NW_021160297.1 15500 27.57% 1337
NW_021160298.1 8550 31.38% 736
NW_021160300.1 23560 37.83% 2088
NW_021160305.1 4510 11.19% 380
NW_021160306.1 8840 22.40% 755
NW_021160307.1 19170 36.38% 1608
NW_021160308.1 16210 30.06% 1362
NW_021160310.1 33880 58.15% 3107
NW_021160311.1 36460 46.30% 3140
NW_021160312.1 29450 33.31% 2545
NW_021160313.1 26640 28.15% 2288
NW_021160319.1 14527 33.44% 1207
NW_021160320.1 13110 24.95% 1129
NW_021160324.1 24660 38.77% 2142
NW_021160325.1 16670 25.59% 1410
NW_021160326.1 12460 19.13% 1041
NW_021160327.1 19490 29.54% 1667
NW_021160328.1 25120 39.67% 2286
NW_021160329.1 14020 26.11% 1224
NW_021160338.1 6660 17.75% 553
NW_021160339.1 3390 8.80% 280
NW_021160341.1 10730 23.17% 890
NW_021160347.1 45460 27.51% 3867
NW_021160353.1 11900 28.90% 1015
NW_021160354.1 5900 14.06% 507
NW_021160355.1 14260 25.67% 1181
NW_021160356.1 12660 16.59% 1071
NW_021160357.1 4220 13.86% 345
NW_021160358.1 12580 31.88% 1072
NW_021160359.1 14750 35.93% 1286
NW_021160361.1 6320 13.43% 523
NW_021160362.1 9280 17.29% 767
NW_021160363.1 19980 32.79% 1683
NW_021160364.1 18030 29.17% 1544
NW_021160365.1 20310 30.57% 1757
NW_021160366.1 26940 37.81% 2332
NW_021160367.1 33480 43.83% 2955
NW_021160368.1 9460 11.98% 798
NW_021160369.1 9950 12.17% 820
NW_021160370.1 31960 35.71% 2761
NW_021160371.1 16950 18.75% 1442
NW_021160372.1 51490 38.30% 4321
NW_021160373.1 24440 42.03% 2149
NW_021160374.1 40030 32.20% 3358
NW_021160375.1 84480 45.96% 7323
NW_021160376.1 271640 31.48% 22553
NW_021160381.1 2250 4.62% 201
NW_021160383.1 40257 58.35% 3528
NW_021160384.1 11070 13.90% 920
NW_021160401.1 3360 20.65% 273
NW_021160410.1 10370 63.02% 965
NW_021160417.1 6660 11.76% 549
NW_021160452.1 4230 24.99% 363
NW_021160482.1 930 5.38% 77
NW_021160484.1 7140 41.04% 608
NW_021160495.1 257540 31.26% 21372
NW_021160514.1 4410 24.48% 385
NW_021160523.1 2550 14.10% 239
NW_021160525.1 4570 25.19% 381
NW_021160535.1 6960 37.98% 607
NW_021160549.1 3940 21.22% 362
NW_021160573.1 10035 52.72% 922
NW_021160589.1 370 1.92% 33
NW_021160606.1 179820 17.88% 14931
NW_021160623.1 2550 12.89% 222
NW_021160625.1 750 3.79% 62
NW_021160629.1 760 3.82% 63
NW_021160635.1 1920 9.56% 151
NW_021160655.1 8960 43.55% 739
NW_021160656.1 4680 22.87% 396
NW_021160678.1 1480 7.12% 122
NW_021160682.1 16175 78.05% 1517
NW_021160688.1 7950 38.93% 713
NW_021160701.1 11576 54.56% 1074
NW_021160725.1 2330 10.76% 195
NW_021160726.1 16310 75.00% 1575
NW_021160734.1 2050 9.42% 181
NW_021160737.1 10 0.05% 1
NW_021160757.1 310 1.40% 29
NW_021160770.1 16220 71.67% 1560
NW_021160772.1 5140 22.67% 451
NW_021160805.1 10420 44.44% 913
NW_021160821.1 1870 7.82% 155
NW_021160827.1 95850 13.06% 8666
NW_021160832.1 1390 5.77% 119
NW_021160834.1 6810 28.24% 538
NW_021160835.1 150 0.88% 12
NW_021160848.1 960 3.95% 74
NW_021160868.1 280 1.15% 26
NW_021160890.1 7377 29.22% 613
NW_021160903.1 10636 40.16% 953
NW_021160919.1 4040 15.50% 343
NW_021160925.1 2190 8.40% 185
NW_021160946.1 6460 24.40% 558
NW_021160955.1 5810 21.89% 486
NW_021160961.1 5350 19.99% 453
NW_021160976.1 11810 43.39% 1010
NW_021160983.1 550 2.02% 49
NW_021160986.1 170 0.62% 17
NW_021161026.1 650 2.33% 58
NW_021161033.1 350 1.22% 33
NW_021161038.1 4570 16.88% 409
NW_021161041.1 4800 16.84% 414
NW_021161043.1 1430 4.90% 124
NW_021161046.1 7540 25.55% 688
NW_021161062.1 2320 7.83% 198
NW_021161066.1 15000 50.27% 1282
NW_021161106.1 11770 38.40% 985
NW_021161107.1 3200 10.40% 273
NW_021161113.1 13470 39.94% 1133
NW_021161114.1 9540 30.92% 885
NW_021161131.1 560 1.79% 47
NW_021161133.1 16840 11.33% 1409
NW_021161138.1 1100 3.53% 93
NW_021161152.1 7980 25.36% 692
NW_021161164.1 7960 24.63% 705
NW_021161166.1 14140 43.51% 1155
NW_021161184.1 2840 9.61% 245
NW_021161201.1 5300 15.96% 464
NW_021161211.1 9400 28.17% 779
NW_021161213.1 2070 6.22% 173
NW_021161224.1 12010 35.63% 1085
NW_021161226.1 7990 23.97% 730
NW_021161241.1 2140 6.24% 184
NW_021161247.1 130 0.38% 13
NW_021161253.1 450 1.30% 42
NW_021161261.1 4440 12.70% 375
NW_021161269.1 17320 49.35% 1481
NW_021161274.1 160 0.46% 14
NW_021161282.1 23570 60.63% 2126
NW_021161303.1 4420 12.28% 364
NW_021161305.1 1460 4.05% 124
NW_021161307.1 3840 14.47% 327
NW_021161312.1 910 2.54% 72
NW_021161320.1 21310 21.69% 1821
NW_021161336.1 10200 27.67% 866
NW_021161338.1 4540 12.21% 373
NW_021161340.1 4770 12.97% 401
NW_021161348.1 9090 24.28% 779
NW_021161355.1 13890 35.95% 1188
NW_021161360.1 1420 3.79% 124
NW_021161364.1 7270 19.04% 642
NW_021161377.1 23210 58.38% 2069
NW_021161379.1 690 1.80% 64
NW_021161380.1 1020 3.20% 94
NW_021161385.1 1990 5.12% 167
NW_021161392.1 15560 39.78% 1372
NW_021161394.1 6630 17.07% 588
NW_021161396.1 900 2.30% 81
NW_021161399.1 5600 25.54% 490
NW_021161404.1 4650 11.79% 388
NW_021161413.1 7680 19.39% 642
NW_021161421.1 1930 4.85% 169
NW_021161422.1 1190 3.01% 108
NW_021161427.1 5630 14.04% 490
NW_021161433.1 1450 3.58% 129
NW_021161437.1 2850 9.49% 240
NW_021161446.1 4820 11.78% 406
NW_021161463.1 420 1.01% 33
NW_021161468.1 5750 13.71% 476
NW_021161470.1 1840 4.39% 148
NW_021161483.1 380 0.90% 33
NW_021161486.1 10080 23.68% 883
NW_021161494.1 2430 5.67% 207
NW_021161497.1 2800 6.52% 237
NW_021161505.1 11580 26.87% 990
NW_021161507.1 14780 34.14% 1253
NW_021161508.1 23234 53.84% 2017
NW_021161519.1 17749 40.47% 1510
NW_021161520.1 6330 14.69% 580
NW_021161523.1 7170 16.57% 599
NW_021161525.1 21140 48.02% 1905
NW_021161526.1 13040 29.60% 1155
NW_021161532.1 3040 6.84% 253
NW_021161535.1 2700 6.05% 233
NW_021161537.1 20545 46.32% 1887
NW_021161545.1 20650 46.22% 1950
NW_021161552.1 3090 7.27% 261
NW_021161554.1 12280 27.20% 1020
NW_021161561.1 15380 34.04% 1332
NW_021161562.1 17600 38.71% 1562
NW_021161567.1 5910 12.98% 504
NW_021161570.1 360 0.80% 32
NW_021161582.1 20820 45.32% 1824
NW_021161585.1 19690 42.73% 1724
NW_021161590.1 29580 64.29% 2737
NW_021161593.1 28490 61.22% 2541
NW_021161596.1 124420 23.08% 10910
NW_021161601.1 12450 26.47% 1058
NW_021161608.1 5170 11.07% 447
NW_021161609.1 1900 4.04% 162
NW_021161614.1 7620 15.97% 662
NW_021161616.1 11510 24.06% 999
NW_021161617.1 1290 2.68% 112
NW_021161627.1 8480 25.36% 732
NW_021161633.1 37210 75.30% 3279
NW_021161642.1 10730 21.56% 883
NW_021161648.1 28440 55.89% 2658
NW_021161679.1 10700 20.52% 935
NW_021161680.1 8620 16.66% 736
NW_021161686.1 38150 28.20% 3303
NW_021161694.1 6450 14.18% 541
NW_021161695.1 13760 25.75% 1158
NW_021161696.1 7480 14.10% 622
NW_021161699.1 21174 43.79% 1846
NW_021161700.1 1720 3.24% 151
NW_021161713.1 4400 8.17% 372
NW_021161715.1 2380 4.37% 203
NW_021161718.1 21290 39.08% 1882
NW_021161725.1 12560 39.92% 1057
NW_021161737.1 12020 21.52% 1017
NW_021161743.1 5910 10.56% 504
NW_021161747.1 1460 2.59% 128
NW_021161754.1 29840 52.18% 2619
NW_021161759.1 2880 5.01% 236
NW_021161767.1 20010 19.60% 1695
NW_021161769.1 9920 17.11% 817
NW_021161772.1 11460 15.50% 971
NW_021161784.1 2888 56.10% 242
NW_021161790.1 27670 45.85% 2430
NW_021161794.1 4130 6.83% 360
NW_021161796.1 7110 11.77% 593
NW_021161798.1 8550 18.16% 742
NW_021161830.1 15730 35.15% 1307
NW_021161832.1 6370 10.05% 543
NW_021161839.1 6830 10.67% 608
NW_021161842.1 16070 24.63% 1336
NW_021161843.1 10350 15.89% 868
NW_021161845.1 34695 53.05% 3053
NW_021161850.1 706921 63.27% 62139
NW_021161853.1 20680 31.34% 1861
NW_021161857.1 17550 26.45% 1457
NW_021161862.1 10570 15.98% 882
NW_021161876.1 26500 38.81% 2189
NW_021161878.1 19870 29.22% 1735
NW_021161881.1 23080 38.32% 1966
NW_021161888.1 27020 38.92% 2380
NW_021161902.1 26510 40.90% 2323
NW_021161927.1 16890 22.58% 1395
NW_021161934.1 23720 31.50% 2038
NW_021161939.1 30890 40.78% 2711
NW_021161954.1 17760 23.03% 1540
NW_021161955.1 15690 20.24% 1367
NW_021161956.1 27910 36.54% 2512
NW_021161958.1 32670 41.60% 2723
NW_021161961.1 26750 34.21% 2229
NW_021161962.1 4930 6.17% 411
NW_021161965.1 15490 19.60% 1343
NW_021161996.1 12300 14.31% 1004
NW_021162004.1 3010 10.60% 262
NW_021162007.1 17550 19.97% 1459
NW_021162009.1 54120 62.08% 4897
NW_021162025.1 17480 19.61% 1505
NW_021162035.1 11520 12.35% 970
NW_021162047.1 17890 18.70% 1510
NW_021162055.1 32610 32.78% 2838
NW_021162083.1 44180 25.64% 3647
NW_021162091.1 31980 28.20% 2913
NW_021162100.1 25790 20.52% 2381
NW_021162108.1 21460 67.33% 1967
NW_021162157.1 6740 11.19% 586
NW_021162185.1 120 1.36% 10
NW_021162208.1 7750 3.11% 677
NW_021162222.1 10990 29.03% 905
NW_021162226.1 6160 14.11% 511
NW_021162246.1 70060 66.32% 5992
NW_021162251.1 46420 65.00% 4041
NW_021162253.1 670 2.14% 61
NW_021162263.1 1360 5.13% 112
NW_021162265.1 20320 52.57% 1770
NW_021162274.1 63710 62.74% 5696
NW_021162277.1 6510 26.17% 534
NW_021162460.1 210 2.79% 18
NW_021162463.1 1250 16.56% 114
NW_021162495.1 1280 19.43% 108
NW_021162553.1 1360 15.70% 118
NW_021162593.1 890 9.57% 74
NW_021162599.1 7505 80.05% 701
NW_021162621.1 2110 21.60% 183
NW_021162643.1 17295 68.05% 1510
NW_021162814.1 1180 9.52% 103
NW_021162871.1 3260 23.48% 294
NW_021162949.1 140 0.93% 13
NW_021163002.1 270 1.70% 26
2533 contigs with no values (90119066 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 214501251 1 120 11.09 10
global segment-length histogram

Files

Filename Size md5
STRv_D1_MSN.bw 1.15 GB bd28bb4740222a3025a8887eff50d33f
genomic_resource.yaml 1.1 KB 0a4bb1c265fae72e9e25de42e3c7e22a
statistics/