Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/STRv_D1_NUDAP_MSN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for STRv_D1_NUDAP_MSN cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: STRv_D1_NUDAP_MSN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_STRv_D1_NUDAP_MSN float

johansen2025Crossspecies_atac_macaque_STRv_D1_NUDAP_MSN

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_STRv_D1_NUDAP_MSN [0.021, 91.6]
n
1,901,275,704
mean
0.103
sd
0.274

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 190127570463.99% 162761536
NC_005943.1 2140 12.92% 203
NC_027914.1 2682230 22.82% 222371
NC_041754.1 157068240 70.24% 13551359
NC_041755.1 132265540 67.41% 11273553
NC_041756.1 126311147 68.17% 10804482
NC_041757.1 112190780 66.01% 9537009
NC_041758.1 117222400 62.58% 9854824
NC_041759.1 115738350 64.63% 9802901
NC_041760.1 118852620 69.97% 10248308
NC_041761.1 95739260 65.72% 8140613
NC_041762.1 91492630 68.21% 7844123
NC_041763.1 73182440 73.54% 6424797
NC_041764.1 90222100 67.80% 7739421
NC_041765.1 87576406 67.34% 7448534
NC_041766.1 73567230 67.66% 6294964
NC_041767.1 88726156 69.29% 7663796
NC_041768.1 75258610 66.43% 6447950
NC_041769.1 59680840 74.95% 5278312
NC_041770.1 60569040 63.47% 5129974
NC_041771.1 48997430 65.79% 4159866
NC_041772.1 39923960 68.46% 3554096
NC_041773.1 56749515 73.57% 4968207
NC_041774.1 72577680 47.32% 5976377
NW_021160097.1 1180 3.18% 105
NW_021160098.1 4130 10.33% 350
NW_021160099.1 1730 4.28% 157
NW_021160102.1 6660 13.27% 557
NW_021160105.1 3730 6.80% 318
NW_021160106.1 13050 23.50% 1089
NW_021160107.1 3700 6.66% 310
NW_021160109.1 12640 15.36% 1059
NW_021160110.1 31660 26.80% 2684
NW_021160111.1 34690 26.08% 2845
NW_021160113.1 67310 57.86% 5983
NW_021160114.1 19350 29.36% 1627
NW_021160116.1 1870 5.28% 163
NW_021160121.1 4870 5.65% 393
NW_021160122.1 13220 14.36% 1099
NW_021160123.1 7860 14.85% 664
NW_021160125.1 360 1.42% 32
NW_021160136.1 8800 14.73% 749
NW_021160140.1 16090 12.35% 1362
NW_021160141.1 18240 13.60% 1535
NW_021160142.1 25600 53.54% 2188
NW_021160144.1 219240 17.83% 18710
NW_021160145.1 2600 9.67% 206
NW_021160147.1 5140 17.11% 433
NW_021160148.1 9090 26.49% 785
NW_021160150.1 5130 13.68% 460
NW_021160155.1 6950 12.75% 604
NW_021160158.1 7130 9.46% 590
NW_021160159.1 13950 16.26% 1158
NW_021160161.1 153752 20.82% 12745
NW_021160167.1 1850 4.89% 161
NW_021160168.1 1380 3.31% 114
NW_021160175.1 103240 55.76% 8582
NW_021160179.1 4650 11.96% 386
NW_021160182.1 15380 26.48% 1337
NW_021160184.1 4260 6.95% 359
NW_021160185.1 5170 8.32% 443
NW_021160186.1 18920 29.34% 1580
NW_021160187.1 5740 7.51% 498
NW_021160188.1 11090 13.37% 906
NW_021160189.1 11210 11.06% 956
NW_021160190.1 9460 26.47% 768
NW_021160191.1 4700 16.87% 390
NW_021160193.1 540 1.73% 48
NW_021160196.1 19070 41.36% 1617
NW_021160197.1 8520 16.44% 698
NW_021160199.1 5660 10.12% 473
NW_021160200.1 6780 11.49% 558
NW_021160201.1 20610 33.54% 1746
NW_021160202.1 8350 12.75% 709
NW_021160203.1 16360 22.66% 1377
NW_021160204.1 13250 18.19% 1097
NW_021160205.1 4520 6.17% 383
NW_021160206.1 11560 13.80% 995
NW_021160207.1 12880 13.03% 1088
NW_021160209.1 40630 6.06% 3377
NW_021160211.1 12420 9.32% 1066
NW_021160220.1 21880 32.79% 1906
NW_021160221.1 10000 14.11% 823
NW_021160222.1 3060 4.01% 273
NW_021160223.1 26410 31.70% 2297
NW_021160225.1 14730 27.36% 1223
NW_021160226.1 9290 25.78% 797
NW_021160228.1 5340 11.16% 452
NW_021160229.1 7400 15.42% 605
NW_021160231.1 6300 11.56% 526
NW_021160233.1 8540 13.21% 733
NW_021160234.1 24210 36.94% 2218
NW_021160236.1 12600 16.20% 1046
NW_021160237.1 26230 30.60% 2187
NW_021160238.1 22610 21.65% 1934
NW_021160239.1 3810 13.06% 315
NW_021160242.1 3740 12.66% 319
NW_021160243.1 2290 7.26% 192
NW_021160244.1 24240 68.82% 2276
NW_021160245.1 4220 9.64% 354
NW_021160248.1 5110 6.84% 423
NW_021160249.1 11780 15.56% 991
NW_021160250.1 3240 5.04% 267
NW_021160251.1 17850 21.14% 1494
NW_021160252.1 25080 28.30% 2071
NW_021160255.1 4610 16.42% 392
NW_021160263.1 3760 7.14% 311
NW_021160266.1 5700 7.60% 490
NW_021160268.1 8660 12.79% 732
NW_021160270.1 7270 20.87% 621
NW_021160271.1 2870 8.26% 244
NW_021160272.1 5750 16.43% 519
NW_021160273.1 3080 7.66% 261
NW_021160277.1 1510 3.37% 131
NW_021160278.1 8770 15.76% 731
NW_021160279.1 14460 21.91% 1209
NW_021160282.1 30140 24.36% 2568
NW_021160284.1 3620 10.40% 315
NW_021160285.1 4440 9.95% 368
NW_021160291.1 2240 4.95% 205
NW_021160293.1 14760 27.94% 1203
NW_021160294.1 18660 23.43% 1555
NW_021160295.1 11810 14.31% 980
NW_021160297.1 10080 17.93% 866
NW_021160298.1 4370 16.04% 359
NW_021160300.1 16620 26.69% 1437
NW_021160305.1 2520 6.25% 215
NW_021160306.1 6440 16.32% 542
NW_021160307.1 12310 23.36% 1027
NW_021160308.1 9020 16.73% 737
NW_021160310.1 26470 45.43% 2378
NW_021160311.1 25530 32.42% 2103
NW_021160312.1 21700 24.54% 1844
NW_021160313.1 14860 15.70% 1237
NW_021160319.1 9730 22.40% 798
NW_021160320.1 8540 16.25% 720
NW_021160324.1 16240 25.53% 1346
NW_021160325.1 11620 17.84% 954
NW_021160326.1 9090 13.95% 773
NW_021160327.1 13650 20.69% 1130
NW_021160328.1 19900 31.43% 1765
NW_021160329.1 10230 19.05% 853
NW_021160338.1 3190 8.50% 277
NW_021160339.1 1050 2.72% 91
NW_021160341.1 6450 13.93% 555
NW_021160347.1 30790 18.63% 2546
NW_021160353.1 9600 23.31% 831
NW_021160354.1 4230 10.08% 358
NW_021160355.1 9320 16.78% 778
NW_021160356.1 7720 10.12% 661
NW_021160357.1 1830 6.01% 150
NW_021160358.1 8890 22.53% 733
NW_021160359.1 10160 24.75% 856
NW_021160361.1 3220 6.84% 288
NW_021160362.1 5620 10.47% 470
NW_021160363.1 12450 20.43% 1048
NW_021160364.1 10540 17.05% 904
NW_021160365.1 13210 19.88% 1095
NW_021160366.1 16470 23.11% 1378
NW_021160367.1 24380 31.92% 2071
NW_021160368.1 4540 5.75% 388
NW_021160369.1 3920 4.79% 348
NW_021160370.1 20910 23.36% 1752
NW_021160371.1 7480 8.27% 631
NW_021160372.1 33620 25.01% 2805
NW_021160373.1 17670 30.39% 1506
NW_021160374.1 16380 13.18% 1376
NW_021160375.1 56150 30.54% 4630
NW_021160376.1 136730 15.85% 11216
NW_021160381.1 1900 3.90% 166
NW_021160383.1 28747 41.66% 2392
NW_021160384.1 5520 6.93% 481
NW_021160401.1 1600 9.83% 137
NW_021160410.1 8790 53.42% 802
NW_021160417.1 3550 6.27% 280
NW_021160452.1 2390 14.12% 194
NW_021160482.1 500 2.89% 40
NW_021160484.1 3970 22.82% 314
NW_021160495.1 186170 22.60% 15422
NW_021160514.1 3340 18.54% 275
NW_021160523.1 1870 10.34% 164
NW_021160525.1 1660 9.15% 137
NW_021160535.1 3690 20.13% 322
NW_021160549.1 3340 17.99% 305
NW_021160573.1 6705 35.22% 581
NW_021160589.1 200 1.04% 20
NW_021160606.1 98370 9.78% 8195
NW_021160623.1 1860 9.40% 162
NW_021160625.1 350 1.77% 31
NW_021160629.1 370 1.86% 33
NW_021160635.1 1200 5.97% 103
NW_021160655.1 4910 23.87% 404
NW_021160656.1 2680 13.10% 216
NW_021160678.1 870 4.19% 79
NW_021160682.1 13975 67.43% 1216
NW_021160688.1 6230 30.51% 546
NW_021160701.1 7180 33.84% 647
NW_021160725.1 1370 6.33% 119
NW_021160726.1 14250 65.52% 1344
NW_021160734.1 1100 5.05% 98
NW_021160757.1 110 0.50% 10
NW_021160770.1 14260 63.01% 1333
NW_021160772.1 3560 15.70% 301
NW_021160805.1 7140 30.45% 608
NW_021160821.1 700 2.93% 59
NW_021160827.1 63950 8.72% 5546
NW_021160832.1 680 2.82% 58
NW_021160834.1 3150 13.06% 253
NW_021160835.1 90 0.53% 7
NW_021160848.1 370 1.52% 31
NW_021160868.1 120 0.49% 10
NW_021160890.1 4130 16.36% 343
NW_021160903.1 7896 29.81% 659
NW_021160919.1 3000 11.51% 252
NW_021160925.1 1040 3.99% 94
NW_021160946.1 4700 17.75% 401
NW_021160955.1 3500 13.18% 296
NW_021160961.1 2200 8.22% 197
NW_021160976.1 8630 31.71% 693
NW_021160983.1 290 1.06% 18
NW_021160986.1 90 0.33% 9
NW_021161026.1 250 0.90% 22
NW_021161033.1 100 0.35% 10
NW_021161038.1 3360 12.41% 312
NW_021161041.1 3210 11.26% 270
NW_021161043.1 600 2.06% 52
NW_021161046.1 5090 17.25% 454
NW_021161062.1 1220 4.12% 117
NW_021161066.1 9310 31.20% 771
NW_021161106.1 6430 20.98% 542
NW_021161107.1 1500 4.88% 129
NW_021161113.1 8210 24.34% 661
NW_021161114.1 5980 19.38% 533
NW_021161131.1 150 0.48% 15
NW_021161133.1 6670 4.49% 573
NW_021161138.1 580 1.86% 50
NW_021161152.1 5890 18.72% 489
NW_021161164.1 4460 13.80% 390
NW_021161166.1 7700 23.69% 642
NW_021161184.1 1590 5.38% 142
NW_021161201.1 3120 9.40% 267
NW_021161211.1 5570 16.69% 484
NW_021161213.1 640 1.92% 59
NW_021161224.1 7880 23.38% 678
NW_021161226.1 4980 14.94% 445
NW_021161241.1 800 2.33% 68
NW_021161247.1 110 0.32% 11
NW_021161253.1 340 0.98% 30
NW_021161261.1 2470 7.07% 203
NW_021161269.1 11280 32.14% 950
NW_021161274.1 20 0.06% 2
NW_021161282.1 17810 45.81% 1563
NW_021161303.1 1490 4.14% 135
NW_021161305.1 870 2.41% 71
NW_021161307.1 1860 7.01% 158
NW_021161312.1 370 1.03% 32
NW_021161320.1 10000 10.18% 855
NW_021161336.1 6050 16.41% 517
NW_021161338.1 2160 5.81% 186
NW_021161340.1 2870 7.81% 250
NW_021161348.1 4600 12.29% 384
NW_021161355.1 7390 19.13% 622
NW_021161360.1 880 2.35% 78
NW_021161364.1 4030 10.55% 351
NW_021161377.1 16570 41.68% 1412
NW_021161379.1 320 0.84% 31
NW_021161380.1 300 0.94% 30
NW_021161385.1 810 2.09% 69
NW_021161392.1 10310 26.36% 890
NW_021161394.1 4100 10.56% 356
NW_021161396.1 290 0.74% 27
NW_021161399.1 4740 21.62% 426
NW_021161404.1 2360 5.99% 203
NW_021161413.1 5030 12.70% 394
NW_021161421.1 900 2.26% 81
NW_021161422.1 750 1.89% 66
NW_021161427.1 4250 10.60% 363
NW_021161433.1 560 1.38% 48
NW_021161437.1 1120 3.73% 97
NW_021161446.1 2160 5.28% 186
NW_021161463.1 80 0.19% 7
NW_021161468.1 2560 6.10% 230
NW_021161470.1 950 2.27% 81
NW_021161483.1 120 0.28% 11
NW_021161486.1 6340 14.90% 528
NW_021161494.1 1090 2.55% 99
NW_021161497.1 1060 2.47% 90
NW_021161505.1 8020 18.61% 686
NW_021161507.1 8880 20.51% 719
NW_021161508.1 15714 36.41% 1304
NW_021161519.1 8300 18.92% 664
NW_021161520.1 5540 12.86% 498
NW_021161523.1 4120 9.52% 355
NW_021161525.1 14430 32.78% 1213
NW_021161526.1 6850 15.55% 586
NW_021161532.1 1230 2.77% 109
NW_021161535.1 1194 2.67% 104
NW_021161537.1 14780 33.32% 1300
NW_021161545.1 14640 32.77% 1317
NW_021161552.1 1200 2.82% 106
NW_021161554.1 4970 11.01% 415
NW_021161561.1 10430 23.08% 872
NW_021161562.1 11240 24.72% 971
NW_021161567.1 2780 6.11% 231
NW_021161570.1 70 0.15% 7
NW_021161582.1 12040 26.21% 1019
NW_021161585.1 13750 29.84% 1187
NW_021161590.1 23260 50.56% 1995
NW_021161593.1 19800 42.55% 1675
NW_021161596.1 73010 13.54% 6204
NW_021161601.1 6670 14.18% 552
NW_021161608.1 2410 5.16% 210
NW_021161609.1 890 1.89% 74
NW_021161614.1 4350 9.12% 361
NW_021161616.1 7590 15.86% 648
NW_021161617.1 620 1.29% 55
NW_021161627.1 5460 16.33% 456
NW_021161633.1 29360 59.42% 2507
NW_021161642.1 6010 12.08% 505
NW_021161648.1 24350 47.85% 2233
NW_021161679.1 7190 13.79% 627
NW_021161680.1 5210 10.07% 434
NW_021161686.1 22860 16.90% 1962
NW_021161694.1 2660 5.85% 240
NW_021161695.1 6960 13.02% 574
NW_021161696.1 3780 7.13% 316
NW_021161699.1 15464 31.98% 1340
NW_021161700.1 420 0.79% 40
NW_021161713.1 2060 3.82% 187
NW_021161715.1 1080 1.99% 93
NW_021161718.1 14830 27.22% 1269
NW_021161725.1 5470 17.38% 436
NW_021161737.1 6780 12.14% 578
NW_021161743.1 2620 4.68% 227
NW_021161747.1 640 1.13% 54
NW_021161754.1 24860 43.47% 2162
NW_021161759.1 1090 1.90% 92
NW_021161767.1 8160 7.99% 701
NW_021161769.1 4570 7.88% 373
NW_021161772.1 6660 9.01% 582
NW_021161784.1 1670 32.44% 132
NW_021161790.1 20717 34.33% 1746
NW_021161794.1 1930 3.19% 163
NW_021161796.1 3750 6.21% 326
NW_021161798.1 5340 11.34% 446
NW_021161830.1 7600 16.98% 622
NW_021161832.1 2940 4.64% 248
NW_021161839.1 2670 4.17% 236
NW_021161842.1 5460 8.37% 477
NW_021161843.1 4350 6.68% 368
NW_021161845.1 25330 38.73% 2136
NW_021161850.1 430561 38.54% 35766
NW_021161853.1 13440 20.37% 1165
NW_021161857.1 11050 16.65% 930
NW_021161862.1 5770 8.72% 496
NW_021161876.1 16100 23.58% 1325
NW_021161878.1 11380 16.74% 982
NW_021161881.1 13380 22.21% 1115
NW_021161888.1 15970 23.00% 1356
NW_021161902.1 15790 24.36% 1297
NW_021161927.1 9430 12.61% 790
NW_021161934.1 12930 17.17% 1039
NW_021161939.1 18700 24.69% 1593
NW_021161954.1 9800 12.71% 846
NW_021161955.1 9510 12.27% 800
NW_021161956.1 17750 23.24% 1531
NW_021161958.1 21830 27.80% 1757
NW_021161961.1 15290 19.55% 1285
NW_021161962.1 1960 2.45% 158
NW_021161965.1 7120 9.01% 595
NW_021161996.1 6880 8.00% 564
NW_021162004.1 1780 6.27% 149
NW_021162007.1 8610 9.80% 723
NW_021162009.1 43050 49.38% 3770
NW_021162025.1 9380 10.52% 814
NW_021162035.1 6360 6.82% 549
NW_021162047.1 8590 8.98% 743
NW_021162055.1 17553 17.64% 1489
NW_021162083.1 19997 11.61% 1690
NW_021162091.1 20230 17.84% 1760
NW_021162100.1 16330 12.99% 1482
NW_021162108.1 18410 57.76% 1598
NW_021162157.1 2790 4.63% 238
NW_021162185.1 40 0.45% 4
NW_021162208.1 4030 1.62% 363
NW_021162222.1 5450 14.40% 454
NW_021162226.1 3140 7.19% 268
NW_021162246.1 49120 46.50% 3938
NW_021162251.1 37860 53.01% 3225
NW_021162253.1 360 1.15% 34
NW_021162263.1 920 3.47% 74
NW_021162265.1 14760 38.19% 1202
NW_021162274.1 47630 46.91% 4011
NW_021162277.1 4260 17.13% 362
NW_021162460.1 40 0.53% 4
NW_021162463.1 750 9.94% 63
NW_021162495.1 700 10.63% 62
NW_021162553.1 720 8.31% 63
NW_021162593.1 300 3.23% 29
NW_021162599.1 6345 67.68% 558
NW_021162621.1 1300 13.31% 106
NW_021162643.1 10860 42.73% 918
NW_021162814.1 870 7.02% 77
NW_021162871.1 2180 15.70% 188
NW_021162949.1 40 0.27% 4
NW_021163002.1 130 0.82% 13
2534 contigs with no values (90140842 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 162761536 1 150 11.68 10
global segment-length histogram

Files

Filename Size md5
STRv_D1_NUDAP_MSN.bw 916.86 MB ff1c3de7719b1025c2a4eee397c22fea
genomic_resource.yaml 1.13 KB ea12d937191a93f25a1281c0f4e07cb1
statistics/