Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/VIP_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for VIP_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: VIP_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_VIP_GABA float

johansen2025Crossspecies_atac_macaque_VIP_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_VIP_GABA [0.0574, 38.2]
n
1,212,744,032
mean
0.153
sd
0.321

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 121274403240.81% 99951687
NC_005943.1 2020 12.20% 188
NC_027914.1 1360050 11.57% 117000
NC_041754.1 104955780 46.94% 8662196
NC_041755.1 83374270 42.49% 6840143
NC_041756.1 80562550 43.48% 6616677
NC_041757.1 68791800 40.47% 5641853
NC_041758.1 68231660 36.43% 5598662
NC_041759.1 72450310 40.46% 5943609
NC_041760.1 77453360 45.60% 6377306
NC_041761.1 59200440 40.64% 4855947
NC_041762.1 58773920 43.82% 4829573
NC_041763.1 52962450 53.22% 4400471
NC_041764.1 58501800 43.96% 4823024
NC_041765.1 54467246 41.88% 4454718
NC_041766.1 46980470 43.21% 3858512
NC_041767.1 59045970 46.11% 4884533
NC_041768.1 49606840 43.79% 4091462
NC_041769.1 43302510 54.38% 3621401
NC_041770.1 35627140 37.33% 2918917
NC_041771.1 30503770 40.96% 2495492
NC_041772.1 29790860 51.09% 2528321
NC_041773.1 39722795 51.50% 3294019
NC_041774.1 34736040 22.65% 2898704
NW_021160097.1 310 0.84% 25
NW_021160098.1 2060 5.15% 184
NW_021160099.1 1610 3.98% 138
NW_021160102.1 3060 6.10% 250
NW_021160105.1 1530 2.79% 131
NW_021160106.1 5030 9.06% 418
NW_021160107.1 1470 2.64% 130
NW_021160109.1 7880 9.57% 661
NW_021160110.1 15330 12.98% 1289
NW_021160111.1 15460 11.62% 1326
NW_021160113.1 51250 44.05% 4415
NW_021160114.1 9010 13.67% 763
NW_021160116.1 820 2.32% 77
NW_021160121.1 3090 3.58% 269
NW_021160122.1 7750 8.42% 678
NW_021160123.1 5510 10.41% 462
NW_021160125.1 270 1.07% 24
NW_021160136.1 4730 7.92% 397
NW_021160140.1 10780 8.28% 930
NW_021160141.1 10830 8.07% 927
NW_021160142.1 19740 41.28% 1613
NW_021160144.1 94910 7.72% 8700
NW_021160145.1 1110 4.13% 92
NW_021160147.1 2350 7.82% 204
NW_021160148.1 6870 20.02% 558
NW_021160150.1 3190 8.51% 289
NW_021160155.1 4310 7.90% 378
NW_021160158.1 5950 7.89% 509
NW_021160159.1 4460 5.20% 410
NW_021160161.1 57952 7.85% 5005
NW_021160167.1 830 2.19% 78
NW_021160168.1 350 0.84% 33
NW_021160175.1 73320 39.60% 5887
NW_021160179.1 1610 4.14% 141
NW_021160182.1 10490 18.06% 875
NW_021160184.1 1570 2.56% 135
NW_021160185.1 1950 3.14% 175
NW_021160186.1 11500 17.83% 942
NW_021160187.1 2820 3.69% 248
NW_021160188.1 5090 6.14% 431
NW_021160189.1 5200 5.13% 434
NW_021160190.1 4790 13.41% 386
NW_021160191.1 2640 9.48% 224
NW_021160193.1 150 0.48% 15
NW_021160196.1 13570 29.43% 1119
NW_021160197.1 4020 7.76% 362
NW_021160199.1 2410 4.31% 224
NW_021160200.1 4550 7.71% 397
NW_021160201.1 9550 15.54% 791
NW_021160202.1 2600 3.97% 223
NW_021160203.1 11030 15.28% 919
NW_021160204.1 7350 10.09% 643
NW_021160205.1 2840 3.88% 250
NW_021160206.1 5020 5.99% 424
NW_021160207.1 10110 10.23% 861
NW_021160209.1 17470 2.61% 1451
NW_021160211.1 5080 3.81% 440
NW_021160220.1 13440 20.14% 1109
NW_021160221.1 3690 5.21% 313
NW_021160222.1 1210 1.58% 111
NW_021160223.1 15240 18.29% 1276
NW_021160225.1 5330 9.90% 460
NW_021160226.1 4750 13.18% 409
NW_021160228.1 2900 6.06% 254
NW_021160229.1 3190 6.65% 279
NW_021160231.1 2380 4.37% 208
NW_021160233.1 4150 6.42% 361
NW_021160234.1 18260 27.86% 1590
NW_021160236.1 4630 5.95% 417
NW_021160237.1 11230 13.10% 972
NW_021160238.1 12510 11.98% 1031
NW_021160239.1 2440 8.37% 197
NW_021160242.1 2570 8.70% 219
NW_021160243.1 1280 4.06% 104
NW_021160244.1 21510 61.07% 1918
NW_021160245.1 3470 7.93% 292
NW_021160248.1 2360 3.16% 207
NW_021160249.1 7300 9.64% 618
NW_021160250.1 1310 2.04% 115
NW_021160251.1 8570 10.15% 703
NW_021160252.1 17720 19.99% 1466
NW_021160255.1 3230 11.50% 277
NW_021160263.1 1290 2.45% 118
NW_021160266.1 1470 1.96% 137
NW_021160268.1 3090 4.56% 268
NW_021160270.1 4130 11.86% 343
NW_021160271.1 1910 5.50% 160
NW_021160272.1 4250 12.15% 364
NW_021160273.1 1230 3.06% 116
NW_021160277.1 550 1.23% 51
NW_021160278.1 5530 9.94% 466
NW_021160279.1 5270 7.99% 442
NW_021160282.1 18410 14.88% 1529
NW_021160284.1 1580 4.54% 138
NW_021160285.1 3380 7.58% 287
NW_021160291.1 360 0.80% 33
NW_021160293.1 7900 14.95% 660
NW_021160294.1 12340 15.50% 1011
NW_021160295.1 5210 6.31% 454
NW_021160297.1 5900 10.49% 499
NW_021160298.1 2660 9.76% 216
NW_021160300.1 10050 16.14% 854
NW_021160305.1 630 1.56% 57
NW_021160306.1 3770 9.55% 307
NW_021160307.1 7100 13.48% 600
NW_021160308.1 3800 7.05% 321
NW_021160310.1 16990 29.16% 1410
NW_021160311.1 15580 19.78% 1311
NW_021160312.1 11780 13.32% 1011
NW_021160313.1 14330 15.14% 1194
NW_021160319.1 5270 12.13% 429
NW_021160320.1 4790 9.11% 407
NW_021160324.1 5920 9.31% 500
NW_021160325.1 4260 6.54% 365
NW_021160326.1 2960 4.54% 270
NW_021160327.1 6290 9.53% 540
NW_021160328.1 14570 23.01% 1249
NW_021160329.1 6640 12.36% 548
NW_021160338.1 1450 3.86% 131
NW_021160339.1 450 1.17% 39
NW_021160341.1 3490 7.54% 293
NW_021160347.1 17560 10.63% 1489
NW_021160353.1 6320 15.35% 524
NW_021160354.1 2740 6.53% 229
NW_021160355.1 3790 6.82% 321
NW_021160356.1 2480 3.25% 220
NW_021160357.1 910 2.99% 79
NW_021160358.1 5200 13.18% 426
NW_021160359.1 5270 12.84% 422
NW_021160361.1 1440 3.06% 130
NW_021160362.1 2340 4.36% 191
NW_021160363.1 7450 12.23% 622
NW_021160364.1 5470 8.85% 457
NW_021160365.1 6530 9.83% 583
NW_021160366.1 8480 11.90% 718
NW_021160367.1 14660 19.19% 1239
NW_021160368.1 1570 1.99% 141
NW_021160369.1 2320 2.84% 211
NW_021160370.1 11170 12.48% 940
NW_021160371.1 2710 3.00% 246
NW_021160372.1 17140 12.75% 1455
NW_021160373.1 12970 22.30% 1068
NW_021160374.1 8810 7.09% 771
NW_021160375.1 19780 10.76% 1661
NW_021160376.1 89780 10.41% 7589
NW_021160381.1 540 1.11% 51
NW_021160383.1 17780 25.77% 1433
NW_021160384.1 1960 2.46% 171
NW_021160401.1 560 3.44% 50
NW_021160410.1 6370 38.71% 540
NW_021160417.1 1650 2.91% 136
NW_021160452.1 1070 6.32% 92
NW_021160482.1 220 1.27% 21
NW_021160484.1 2220 12.76% 179
NW_021160495.1 36330 4.41% 3278
NW_021160514.1 1750 9.71% 138
NW_021160523.1 780 4.31% 65
NW_021160525.1 1320 7.28% 110
NW_021160535.1 1390 7.58% 112
NW_021160549.1 2220 11.96% 180
NW_021160573.1 2990 15.71% 257
NW_021160589.1 250 1.30% 22
NW_021160606.1 39270 3.90% 3432
NW_021160623.1 1390 7.03% 118
NW_021160625.1 40 0.20% 4
NW_021160629.1 230 1.16% 21
NW_021160635.1 410 2.04% 39
NW_021160655.1 2700 13.12% 220
NW_021160656.1 690 3.37% 61
NW_021160678.1 520 2.50% 49
NW_021160682.1 10155 49.00% 855
NW_021160688.1 3620 17.73% 311
NW_021160701.1 4400 20.74% 375
NW_021160725.1 900 4.16% 72
NW_021160726.1 11650 53.57% 1050
NW_021160734.1 420 1.93% 37
NW_021160757.1 100 0.45% 9
NW_021160770.1 10900 48.16% 958
NW_021160772.1 1840 8.11% 147
NW_021160805.1 4150 17.70% 344
NW_021160821.1 290 1.21% 27
NW_021160827.1 35750 4.87% 2975
NW_021160832.1 250 1.04% 22
NW_021160834.1 890 3.69% 85
NW_021160835.1 40 0.24% 4
NW_021160848.1 160 0.66% 13
NW_021160868.1 80 0.33% 8
NW_021160890.1 1570 6.22% 141
NW_021160903.1 3590 13.55% 292
NW_021160919.1 1600 6.14% 141
NW_021160925.1 400 1.53% 33
NW_021160946.1 2430 9.18% 207
NW_021160955.1 1200 4.52% 106
NW_021160961.1 810 3.03% 71
NW_021160976.1 5880 21.60% 483
NW_021160983.1 40 0.15% 4
NW_021160986.1 80 0.29% 8
NW_021161026.1 40 0.14% 4
NW_021161033.1 20 0.07% 2
NW_021161038.1 2740 10.12% 233
NW_021161041.1 850 2.98% 75
NW_021161043.1 230 0.79% 19
NW_021161046.1 3460 11.73% 292
NW_021161062.1 1270 4.29% 110
NW_021161066.1 4830 16.19% 405
NW_021161106.1 2450 7.99% 212
NW_021161107.1 320 1.04% 30
NW_021161113.1 2450 7.26% 217
NW_021161114.1 3950 12.80% 351
NW_021161131.1 90 0.29% 9
NW_021161133.1 3190 2.15% 273
NW_021161138.1 120 0.38% 11
NW_021161152.1 2940 9.34% 260
NW_021161164.1 2030 6.28% 177
NW_021161166.1 4220 12.99% 349
NW_021161184.1 500 1.69% 46
NW_021161201.1 1400 4.22% 122
NW_021161211.1 2910 8.72% 256
NW_021161213.1 270 0.81% 26
NW_021161224.1 5220 15.49% 435
NW_021161226.1 2700 8.10% 226
NW_021161241.1 320 0.93% 32
NW_021161253.1 40 0.12% 4
NW_021161261.1 1570 4.49% 134
NW_021161269.1 5410 15.41% 454
NW_021161282.1 13080 33.65% 1112
NW_021161303.1 420 1.17% 41
NW_021161305.1 600 1.66% 51
NW_021161307.1 850 3.20% 78
NW_021161312.1 140 0.39% 12
NW_021161320.1 3360 3.42% 285
NW_021161336.1 2200 5.97% 197
NW_021161338.1 810 2.18% 78
NW_021161340.1 1750 4.76% 149
NW_021161348.1 3330 8.89% 281
NW_021161355.1 3480 9.01% 298
NW_021161360.1 260 0.69% 24
NW_021161364.1 1870 4.90% 162
NW_021161377.1 7250 18.23% 591
NW_021161379.1 190 0.50% 17
NW_021161380.1 100 0.31% 10
NW_021161385.1 390 1.00% 37
NW_021161392.1 6760 17.28% 605
NW_021161394.1 2660 6.85% 213
NW_021161396.1 80 0.20% 6
NW_021161399.1 2330 10.63% 196
NW_021161404.1 1200 3.04% 112
NW_021161413.1 2760 6.97% 230
NW_021161421.1 150 0.38% 14
NW_021161422.1 360 0.91% 34
NW_021161427.1 1930 4.81% 165
NW_021161433.1 300 0.74% 29
NW_021161437.1 760 2.53% 66
NW_021161446.1 820 2.00% 79
NW_021161463.1 60 0.14% 6
NW_021161468.1 1060 2.53% 94
NW_021161470.1 380 0.91% 36
NW_021161483.1 20 0.05% 2
NW_021161486.1 3010 7.07% 246
NW_021161494.1 490 1.14% 46
NW_021161497.1 450 1.05% 41
NW_021161505.1 3610 8.38% 310
NW_021161507.1 2170 5.01% 197
NW_021161508.1 10750 24.91% 883
NW_021161519.1 3270 7.46% 281
NW_021161520.1 4600 10.67% 429
NW_021161523.1 1960 4.53% 162
NW_021161525.1 9840 22.35% 819
NW_021161526.1 4010 9.10% 337
NW_021161532.1 300 0.67% 28
NW_021161535.1 1400 3.14% 127
NW_021161537.1 6060 13.66% 498
NW_021161545.1 7780 17.41% 626
NW_021161552.1 320 0.75% 32
NW_021161554.1 1570 3.48% 144
NW_021161561.1 5010 11.09% 403
NW_021161562.1 5640 12.40% 452
NW_021161567.1 1410 3.10% 128
NW_021161570.1 90 0.20% 9
NW_021161582.1 6820 14.85% 568
NW_021161585.1 8780 19.05% 759
NW_021161590.1 11820 25.69% 946
NW_021161593.1 8190 17.60% 679
NW_021161596.1 29720 5.51% 2524
NW_021161601.1 1580 3.36% 145
NW_021161608.1 920 1.97% 80
NW_021161609.1 390 0.83% 33
NW_021161614.1 1940 4.07% 173
NW_021161616.1 3840 8.03% 339
NW_021161617.1 260 0.54% 24
NW_021161627.1 4440 13.28% 369
NW_021161633.1 16070 32.52% 1306
NW_021161642.1 1780 3.58% 163
NW_021161648.1 16520 32.47% 1389
NW_021161679.1 4040 7.75% 338
NW_021161680.1 1920 3.71% 159
NW_021161686.1 12060 8.91% 1014
NW_021161694.1 910 2.00% 85
NW_021161695.1 1980 3.70% 182
NW_021161696.1 1340 2.53% 111
NW_021161699.1 4614 9.54% 375
NW_021161700.1 160 0.30% 16
NW_021161713.1 760 1.41% 71
NW_021161715.1 280 0.51% 24
NW_021161718.1 9550 17.53% 786
NW_021161725.1 3080 9.79% 257
NW_021161737.1 2970 5.32% 256
NW_021161743.1 630 1.13% 59
NW_021161747.1 390 0.69% 39
NW_021161754.1 17090 29.88% 1434
NW_021161759.1 460 0.80% 44
NW_021161767.1 6860 6.72% 569
NW_021161769.1 3790 6.54% 315
NW_021161772.1 3470 4.69% 290
NW_021161784.1 1050 20.40% 83
NW_021161790.1 11870 19.67% 952
NW_021161794.1 1140 1.89% 106
NW_021161796.1 1570 2.60% 146
NW_021161798.1 2700 5.74% 229
NW_021161830.1 4470 9.99% 389
NW_021161832.1 1140 1.80% 102
NW_021161839.1 1220 1.91% 107
NW_021161842.1 5120 7.85% 449
NW_021161843.1 1530 2.35% 135
NW_021161845.1 12830 19.62% 1091
NW_021161850.1 143460 12.84% 12309
NW_021161853.1 7350 11.14% 623
NW_021161857.1 2700 4.07% 238
NW_021161862.1 3270 4.94% 283
NW_021161876.1 4870 7.13% 418
NW_021161878.1 3060 4.50% 255
NW_021161881.1 12000 19.92% 1026
NW_021161888.1 7660 11.03% 617
NW_021161902.1 8390 12.95% 682
NW_021161927.1 3310 4.42% 290
NW_021161934.1 4430 5.88% 381
NW_021161939.1 8940 11.80% 770
NW_021161954.1 3120 4.05% 273
NW_021161955.1 5420 6.99% 453
NW_021161956.1 11470 15.02% 945
NW_021161958.1 9190 11.70% 755
NW_021161961.1 7300 9.33% 614
NW_021161962.1 780 0.98% 67
NW_021161965.1 4800 6.07% 415
NW_021161996.1 4120 4.79% 360
NW_021162004.1 1310 4.61% 115
NW_021162007.1 2580 2.94% 229
NW_021162009.1 27480 31.52% 2288
NW_021162025.1 3450 3.87% 294
NW_021162035.1 3080 3.30% 284
NW_021162047.1 3110 3.25% 279
NW_021162055.1 6390 6.42% 552
NW_021162083.1 8280 4.81% 735
NW_021162091.1 9920 8.75% 796
NW_021162100.1 10090 8.03% 892
NW_021162108.1 11950 37.49% 952
NW_021162157.1 1150 1.91% 102
NW_021162208.1 2080 0.84% 198
NW_021162222.1 3070 8.11% 277
NW_021162226.1 1280 2.93% 116
NW_021162246.1 23770 22.50% 1954
NW_021162251.1 16570 23.20% 1383
NW_021162253.1 180 0.57% 18
NW_021162263.1 740 2.79% 66
NW_021162265.1 10370 26.83% 840
NW_021162274.1 36520 35.97% 3014
NW_021162277.1 2510 10.09% 205
NW_021162460.1 20 0.27% 2
NW_021162463.1 180 2.38% 16
NW_021162495.1 390 5.92% 38
NW_021162553.1 380 4.39% 34
NW_021162593.1 170 1.83% 14
NW_021162599.1 2630 28.05% 232
NW_021162621.1 550 5.63% 45
NW_021162643.1 5030 19.79% 421
NW_021162814.1 380 3.07% 32
NW_021162871.1 1080 7.78% 90
NW_021162949.1 40 0.27% 4
NW_021163002.1 40 0.25% 3
2537 contigs with no values (90218523 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 99951687 2 140 12.13 10
global segment-length histogram

Files

Filename Size md5
VIP_GABA.bw 631.04 MB 113e3db8ea0b4aafe72d38bd767798c6
genomic_resource.yaml 1.09 KB ff34a9a112d7edeebe4c1dd9f7c77e87
statistics/