Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/VLMC/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for VLMC cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: VLMC
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_VLMC float

johansen2025Crossspecies_atac_macaque_VLMC

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_VLMC [0.259, 236]
n
307,084,371
mean
0.41
sd
0.729

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 30708437110.33% 27052492
NC_005943.1 2080 12.56% 199
NC_027914.1 421450 3.59% 39689
NC_041754.1 26510760 11.86% 2321886
NC_041755.1 20259180 10.33% 1796516
NC_041756.1 20088260 10.84% 1771644
NC_041757.1 18354780 10.80% 1622147
NC_041758.1 16288880 8.70% 1466252
NC_041759.1 17588590 9.82% 1565448
NC_041760.1 19326910 11.38% 1698320
NC_041761.1 14254280 9.78% 1268952
NC_041762.1 14866170 11.08% 1306438
NC_041763.1 13158920 13.22% 1136380
NC_041764.1 15277080 11.48% 1343007
NC_041765.1 13434730 10.33% 1192124
NC_041766.1 11532730 10.61% 1020475
NC_041767.1 15440510 12.06% 1347288
NC_041768.1 12936640 11.42% 1132911
NC_041769.1 12304310 15.45% 1054025
NC_041770.1 9169210 9.61% 818784
NC_041771.1 7529100 10.11% 669553
NC_041772.1 9609370 16.48% 814447
NC_041773.1 10243460 13.28% 886652
NC_041774.1 7817760 5.10% 719250
NW_021160097.1 40 0.11% 4
NW_021160098.1 690 1.73% 63
NW_021160099.1 160 0.40% 16
NW_021160102.1 520 1.04% 49
NW_021160105.1 410 0.75% 41
NW_021160106.1 770 1.39% 75
NW_021160107.1 310 0.56% 29
NW_021160109.1 2410 2.93% 221
NW_021160110.1 5110 4.33% 454
NW_021160111.1 4010 3.01% 382
NW_021160113.1 22570 19.40% 1897
NW_021160114.1 2270 3.44% 200
NW_021160116.1 650 1.84% 61
NW_021160121.1 790 0.92% 70
NW_021160122.1 1410 1.53% 133
NW_021160123.1 1370 2.59% 124
NW_021160125.1 80 0.32% 8
NW_021160136.1 590 0.99% 57
NW_021160140.1 2380 1.83% 218
NW_021160141.1 1820 1.36% 173
NW_021160142.1 2940 6.15% 264
NW_021160144.1 47430 3.86% 4529
NW_021160145.1 350 1.30% 34
NW_021160147.1 910 3.03% 86
NW_021160148.1 1010 2.94% 96
NW_021160150.1 1440 3.84% 119
NW_021160155.1 1790 3.28% 154
NW_021160158.1 1280 1.70% 113
NW_021160159.1 1530 1.78% 146
NW_021160161.1 20702 2.80% 1872
NW_021160167.1 140 0.37% 11
NW_021160168.1 130 0.31% 12
NW_021160175.1 9820 5.30% 918
NW_021160179.1 280 0.72% 28
NW_021160182.1 1020 1.76% 94
NW_021160184.1 770 1.26% 64
NW_021160185.1 410 0.66% 37
NW_021160186.1 2580 4.00% 236
NW_021160187.1 240 0.31% 24
NW_021160188.1 650 0.78% 64
NW_021160189.1 2240 2.21% 195
NW_021160190.1 780 2.18% 73
NW_021160191.1 590 2.12% 53
NW_021160193.1 40 0.13% 4
NW_021160196.1 3910 8.48% 337
NW_021160197.1 950 1.83% 86
NW_021160199.1 450 0.80% 45
NW_021160200.1 670 1.14% 64
NW_021160201.1 870 1.42% 79
NW_021160202.1 470 0.72% 43
NW_021160203.1 1580 2.19% 149
NW_021160204.1 890 1.22% 86
NW_021160205.1 220 0.30% 22
NW_021160206.1 920 1.10% 82
NW_021160207.1 1650 1.67% 153
NW_021160209.1 5810 0.87% 534
NW_021160211.1 3040 2.28% 263
NW_021160220.1 610 0.91% 57
NW_021160221.1 960 1.35% 95
NW_021160222.1 570 0.75% 56
NW_021160223.1 5110 6.13% 428
NW_021160225.1 1210 2.25% 113
NW_021160226.1 1880 5.22% 165
NW_021160228.1 510 1.07% 41
NW_021160229.1 620 1.29% 61
NW_021160231.1 950 1.74% 80
NW_021160233.1 680 1.05% 58
NW_021160234.1 5230 7.98% 442
NW_021160236.1 620 0.80% 60
NW_021160237.1 2650 3.09% 225
NW_021160238.1 2870 2.75% 268
NW_021160239.1 230 0.79% 21
NW_021160242.1 640 2.17% 55
NW_021160243.1 60 0.19% 6
NW_021160244.1 3630 10.31% 319
NW_021160245.1 470 1.07% 39
NW_021160248.1 500 0.67% 48
NW_021160249.1 2250 2.97% 200
NW_021160250.1 360 0.56% 36
NW_021160251.1 400 0.47% 40
NW_021160252.1 2400 2.71% 223
NW_021160255.1 850 3.03% 74
NW_021160263.1 280 0.53% 28
NW_021160266.1 380 0.51% 38
NW_021160268.1 970 1.43% 93
NW_021160270.1 650 1.87% 59
NW_021160271.1 700 2.01% 58
NW_021160272.1 1840 5.26% 153
NW_021160273.1 360 0.90% 32
NW_021160277.1 140 0.31% 14
NW_021160278.1 630 1.13% 63
NW_021160279.1 920 1.39% 88
NW_021160282.1 1930 1.56% 181
NW_021160284.1 40 0.11% 4
NW_021160285.1 310 0.69% 28
NW_021160291.1 310 0.68% 29
NW_021160293.1 1700 3.22% 154
NW_021160294.1 2130 2.67% 197
NW_021160295.1 1070 1.30% 102
NW_021160297.1 1270 2.26% 118
NW_021160298.1 460 1.69% 45
NW_021160300.1 2170 3.48% 194
NW_021160305.1 60 0.15% 6
NW_021160306.1 800 2.03% 74
NW_021160307.1 810 1.54% 79
NW_021160308.1 1160 2.15% 106
NW_021160310.1 5700 9.78% 474
NW_021160311.1 3100 3.94% 270
NW_021160312.1 3190 3.61% 282
NW_021160313.1 1550 1.64% 147
NW_021160319.1 310 0.71% 31
NW_021160320.1 570 1.08% 52
NW_021160324.1 2760 4.34% 238
NW_021160325.1 610 0.94% 56
NW_021160326.1 1340 2.06% 126
NW_021160327.1 1330 2.02% 123
NW_021160328.1 4950 7.82% 412
NW_021160329.1 1870 3.48% 161
NW_021160338.1 250 0.67% 24
NW_021160339.1 170 0.44% 13
NW_021160341.1 580 1.25% 52
NW_021160347.1 3120 1.89% 285
NW_021160353.1 1220 2.96% 115
NW_021160354.1 420 1.00% 37
NW_021160355.1 630 1.13% 61
NW_021160356.1 330 0.43% 32
NW_021160357.1 330 1.08% 31
NW_021160358.1 1240 3.14% 115
NW_021160359.1 2140 5.21% 181
NW_021160361.1 460 0.98% 44
NW_021160362.1 990 1.84% 80
NW_021160363.1 2920 4.79% 263
NW_021160364.1 2010 3.25% 175
NW_021160365.1 1240 1.87% 115
NW_021160366.1 1900 2.67% 174
NW_021160367.1 4070 5.33% 360
NW_021160368.1 420 0.53% 42
NW_021160369.1 560 0.68% 49
NW_021160370.1 2110 2.36% 182
NW_021160371.1 620 0.69% 61
NW_021160372.1 3170 2.36% 281
NW_021160373.1 1830 3.15% 163
NW_021160374.1 1880 1.51% 171
NW_021160375.1 4790 2.61% 439
NW_021160376.1 12980 1.50% 1248
NW_021160383.1 4240 6.15% 378
NW_021160384.1 120 0.15% 12
NW_021160401.1 240 1.47% 24
NW_021160410.1 1400 8.51% 122
NW_021160417.1 530 0.94% 43
NW_021160452.1 280 1.65% 24
NW_021160484.1 550 3.16% 52
NW_021160495.1 17310 2.10% 1640
NW_021160514.1 170 0.94% 17
NW_021160523.1 40 0.22% 4
NW_021160525.1 160 0.88% 15
NW_021160535.1 600 3.27% 55
NW_021160549.1 180 0.97% 16
NW_021160573.1 1510 7.93% 127
NW_021160606.1 15310 1.52% 1426
NW_021160623.1 260 1.31% 25
NW_021160625.1 40 0.20% 4
NW_021160635.1 40 0.20% 4
NW_021160655.1 1010 4.91% 93
NW_021160656.1 100 0.49% 10
NW_021160678.1 20 0.10% 2
NW_021160682.1 2590 12.50% 210
NW_021160688.1 1510 7.40% 136
NW_021160701.1 3130 14.75% 254
NW_021160726.1 8640 39.73% 704
NW_021160734.1 380 1.75% 36
NW_021160757.1 20 0.09% 2
NW_021160770.1 8230 36.36% 684
NW_021160772.1 360 1.59% 32
NW_021160805.1 1250 5.33% 97
NW_021160821.1 60 0.25% 6
NW_021160827.1 14970 2.04% 1251
NW_021160832.1 40 0.17% 4
NW_021160834.1 260 1.08% 26
NW_021160848.1 40 0.16% 4
NW_021160890.1 460 1.82% 44
NW_021160903.1 1060 4.00% 96
NW_021160919.1 90 0.35% 9
NW_021160925.1 100 0.38% 10
NW_021160946.1 680 2.57% 63
NW_021160955.1 260 0.98% 25
NW_021160961.1 200 0.75% 20
NW_021160976.1 600 2.20% 57
NW_021160986.1 20 0.07% 2
NW_021161038.1 1130 4.17% 102
NW_021161041.1 430 1.51% 40
NW_021161043.1 120 0.41% 12
NW_021161046.1 1880 6.37% 156
NW_021161062.1 80 0.27% 8
NW_021161066.1 1100 3.69% 91
NW_021161106.1 610 1.99% 59
NW_021161107.1 230 0.75% 23
NW_021161113.1 550 1.63% 54
NW_021161114.1 2750 8.91% 226
NW_021161131.1 20 0.06% 2
NW_021161133.1 720 0.48% 69
NW_021161138.1 40 0.13% 4
NW_021161152.1 340 1.08% 29
NW_021161164.1 1020 3.16% 82
NW_021161166.1 1720 5.29% 145
NW_021161184.1 120 0.41% 12
NW_021161201.1 350 1.05% 32
NW_021161211.1 270 0.81% 27
NW_021161213.1 80 0.24% 8
NW_021161224.1 870 2.58% 79
NW_021161226.1 1460 4.38% 124
NW_021161253.1 20 0.06% 2
NW_021161261.1 290 0.83% 29
NW_021161269.1 700 1.99% 66
NW_021161282.1 3750 9.65% 316
NW_021161303.1 290 0.81% 29
NW_021161305.1 40 0.11% 4
NW_021161307.1 130 0.49% 11
NW_021161312.1 40 0.11% 4
NW_021161320.1 1480 1.51% 139
NW_021161336.1 400 1.09% 37
NW_021161338.1 120 0.32% 12
NW_021161340.1 140 0.38% 14
NW_021161348.1 480 1.28% 46
NW_021161355.1 1280 3.31% 111
NW_021161360.1 140 0.37% 11
NW_021161364.1 650 1.70% 57
NW_021161377.1 2080 5.23% 185
NW_021161379.1 60 0.16% 4
NW_021161380.1 50 0.16% 5
NW_021161385.1 80 0.21% 8
NW_021161392.1 1960 5.01% 179
NW_021161394.1 460 1.18% 43
NW_021161399.1 360 1.64% 34
NW_021161404.1 160 0.41% 16
NW_021161413.1 640 1.62% 61
NW_021161421.1 180 0.45% 18
NW_021161427.1 240 0.60% 23
NW_021161433.1 120 0.30% 12
NW_021161437.1 70 0.23% 6
NW_021161446.1 310 0.76% 31
NW_021161468.1 220 0.52% 22
NW_021161470.1 20 0.05% 2
NW_021161483.1 20 0.05% 2
NW_021161486.1 1770 4.16% 163
NW_021161494.1 80 0.19% 8
NW_021161497.1 240 0.56% 22
NW_021161505.1 540 1.25% 52
NW_021161507.1 570 1.32% 55
NW_021161508.1 1520 3.52% 142
NW_021161519.1 1050 2.39% 99
NW_021161520.1 2650 6.15% 237
NW_021161523.1 250 0.58% 25
NW_021161525.1 1650 3.75% 147
NW_021161526.1 1160 2.63% 100
NW_021161532.1 130 0.29% 12
NW_021161535.1 230 0.52% 23
NW_021161537.1 2940 6.63% 238
NW_021161545.1 3729 8.35% 308
NW_021161552.1 150 0.35% 14
NW_021161554.1 610 1.35% 59
NW_021161561.1 1340 2.97% 125
NW_021161562.1 2420 5.32% 202
NW_021161567.1 350 0.77% 35
NW_021161570.1 40 0.09% 3
NW_021161582.1 1930 4.20% 173
NW_021161585.1 2230 4.84% 197
NW_021161590.1 6620 14.39% 542
NW_021161593.1 2440 5.24% 208
NW_021161596.1 12070 2.24% 1060
NW_021161601.1 830 1.76% 76
NW_021161608.1 160 0.34% 16
NW_021161609.1 120 0.26% 12
NW_021161614.1 140 0.29% 14
NW_021161616.1 2230 4.66% 206
NW_021161617.1 140 0.29% 14
NW_021161627.1 490 1.47% 44
NW_021161633.1 3060 6.19% 272
NW_021161642.1 290 0.58% 29
NW_021161648.1 7170 14.09% 603
NW_021161679.1 430 0.82% 42
NW_021161680.1 730 1.41% 69
NW_021161686.1 3980 2.94% 353
NW_021161694.1 440 0.97% 38
NW_021161695.1 630 1.18% 60
NW_021161696.1 530 1.00% 50
NW_021161699.1 1570 3.25% 143
NW_021161700.1 40 0.08% 4
NW_021161713.1 140 0.26% 14
NW_021161715.1 80 0.15% 8
NW_021161718.1 1640 3.01% 153
NW_021161725.1 620 1.97% 57
NW_021161737.1 380 0.68% 34
NW_021161743.1 250 0.45% 24
NW_021161747.1 110 0.20% 11
NW_021161754.1 2810 4.91% 248
NW_021161759.1 120 0.21% 12
NW_021161767.1 1070 1.05% 100
NW_021161769.1 520 0.90% 48
NW_021161772.1 560 0.76% 55
NW_021161784.1 250 4.86% 20
NW_021161790.1 2550 4.23% 233
NW_021161794.1 340 0.56% 31
NW_021161796.1 360 0.60% 35
NW_021161798.1 920 1.95% 84
NW_021161830.1 470 1.05% 46
NW_021161832.1 290 0.46% 29
NW_021161839.1 500 0.78% 43
NW_021161842.1 710 1.09% 68
NW_021161843.1 520 0.80% 50
NW_021161845.1 5150 7.88% 450
NW_021161850.1 63180 5.65% 5782
NW_021161853.1 3540 5.36% 285
NW_021161857.1 670 1.01% 66
NW_021161862.1 680 1.03% 65
NW_021161876.1 1510 2.21% 143
NW_021161878.1 1680 2.47% 154
NW_021161881.1 1510 2.51% 138
NW_021161888.1 1800 2.59% 165
NW_021161902.1 1420 2.19% 129
NW_021161927.1 550 0.74% 50
NW_021161934.1 540 0.72% 53
NW_021161939.1 2420 3.19% 218
NW_021161954.1 1420 1.84% 125
NW_021161955.1 950 1.23% 79
NW_021161956.1 5030 6.59% 418
NW_021161958.1 1430 1.82% 137
NW_021161961.1 2040 2.61% 190
NW_021161962.1 300 0.38% 29
NW_021161965.1 930 1.18% 86
NW_021161996.1 800 0.93% 77
NW_021162004.1 130 0.46% 12
NW_021162007.1 1190 1.35% 107
NW_021162009.1 10930 12.54% 917
NW_021162025.1 1660 1.86% 131
NW_021162035.1 640 0.69% 63
NW_021162047.1 470 0.49% 47
NW_021162055.1 3660 3.68% 325
NW_021162083.1 3360 1.95% 316
NW_021162091.1 3920 3.46% 334
NW_021162100.1 6240 4.96% 514
NW_021162108.1 2580 8.09% 233
NW_021162157.1 490 0.81% 42
NW_021162208.1 450 0.18% 44
NW_021162222.1 630 1.66% 62
NW_021162226.1 550 1.26% 55
NW_021162246.1 4030 3.81% 379
NW_021162251.1 3320 4.65% 308
NW_021162253.1 20 0.06% 2
NW_021162263.1 150 0.57% 14
NW_021162265.1 1730 4.48% 151
NW_021162274.1 6520 6.42% 584
NW_021162277.1 740 2.98% 70
NW_021162460.1 20 0.27% 2
NW_021162495.1 180 2.73% 15
NW_021162553.1 20 0.23% 2
NW_021162593.1 40 0.43% 4
NW_021162599.1 880 9.39% 74
NW_021162621.1 20 0.20% 2
NW_021162643.1 1970 7.75% 173
NW_021162814.1 40 0.32% 4
NW_021162871.1 360 2.59% 31
NW_021163002.1 20 0.13% 2
2553 contigs with no values (90647749 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 27052492 9 120 11.35 10
global segment-length histogram

Files

Filename Size md5
VLMC.bw 181.11 MB 27ff53e5c2142c38073edafcf555f656
genomic_resource.yaml 1.08 KB 03719395e85d8b8954ce73c78a7aee7d
statistics/