Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/VTR-HTH_Glut/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for VTR-HTH_Glut cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: VTR-HTH_Glut
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_VTR-HTH_Glut float

johansen2025Crossspecies_atac_macaque_VTR-HTH_Glut

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_VTR-HTH_Glut [0.0446, 125]
n
1,553,937,268
mean
0.141
sd
0.285

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 155393726852.30% 129348702
NC_005943.1 1950 11.77% 187
NC_027914.1 1970680 16.77% 165433
NC_041754.1 131768310 58.93% 11030723
NC_041755.1 106521570 54.29% 8821312
NC_041756.1 102863370 55.52% 8552305
NC_041757.1 89587520 52.71% 7396716
NC_041758.1 89840940 47.96% 7383542
NC_041759.1 93428800 52.17% 7720591
NC_041760.1 98283420 57.86% 8197382
NC_041761.1 77211620 53.00% 6383682
NC_041762.1 76069220 56.72% 6330738
NC_041763.1 63279010 63.59% 5356733
NC_041764.1 74190430 55.75% 6178534
NC_041765.1 69892176 53.75% 5774930
NC_041766.1 60841390 55.95% 5056573
NC_041767.1 74465180 58.15% 6247727
NC_041768.1 63411900 55.98% 5291689
NC_041769.1 51969930 65.27% 4431259
NC_041770.1 47437840 49.71% 3911628
NC_041771.1 39561090 53.12% 3263646
NC_041772.1 35579550 61.01% 3059149
NC_041773.1 48785405 63.24% 4122689
NC_041774.1 53213420 34.69% 4354834
NW_021160097.1 560 1.51% 46
NW_021160098.1 2650 6.63% 237
NW_021160099.1 1310 3.24% 119
NW_021160102.1 5300 10.56% 446
NW_021160105.1 3340 6.09% 284
NW_021160106.1 8030 14.46% 680
NW_021160107.1 2840 5.11% 254
NW_021160109.1 9200 11.18% 773
NW_021160110.1 24760 20.96% 2088
NW_021160111.1 28160 21.17% 2347
NW_021160113.1 56790 48.82% 4952
NW_021160114.1 15220 23.09% 1268
NW_021160116.1 1580 4.46% 135
NW_021160121.1 3950 4.58% 346
NW_021160122.1 8240 8.95% 690
NW_021160123.1 5850 11.05% 501
NW_021160125.1 360 1.42% 30
NW_021160136.1 6770 11.33% 553
NW_021160140.1 13160 10.10% 1099
NW_021160141.1 12680 9.45% 1081
NW_021160142.1 21770 45.53% 1834
NW_021160144.1 200650 16.31% 17150
NW_021160145.1 2490 9.27% 208
NW_021160147.1 2900 9.65% 237
NW_021160148.1 6520 19.00% 543
NW_021160150.1 3110 8.29% 286
NW_021160155.1 4790 8.78% 414
NW_021160158.1 6080 8.07% 511
NW_021160159.1 13010 15.16% 1108
NW_021160161.1 117142 15.86% 9712
NW_021160167.1 800 2.11% 72
NW_021160168.1 870 2.09% 76
NW_021160175.1 92150 49.77% 7437
NW_021160179.1 2560 6.59% 221
NW_021160182.1 9940 17.11% 833
NW_021160184.1 2860 4.67% 258
NW_021160185.1 2900 4.67% 257
NW_021160186.1 13550 21.01% 1128
NW_021160187.1 2840 3.72% 252
NW_021160188.1 10650 12.84% 870
NW_021160189.1 8390 8.28% 709
NW_021160190.1 7880 22.05% 638
NW_021160191.1 2260 8.11% 187
NW_021160193.1 440 1.41% 39
NW_021160196.1 15490 33.60% 1313
NW_021160197.1 5900 11.39% 513
NW_021160199.1 4720 8.44% 391
NW_021160200.1 3820 6.47% 338
NW_021160201.1 13530 22.02% 1094
NW_021160202.1 4530 6.92% 372
NW_021160203.1 11280 15.62% 943
NW_021160204.1 9200 12.63% 781
NW_021160205.1 4670 6.38% 411
NW_021160206.1 7770 9.28% 650
NW_021160207.1 10030 10.15% 837
NW_021160209.1 34770 5.19% 2912
NW_021160211.1 12160 9.12% 1039
NW_021160220.1 13390 20.07% 1136
NW_021160221.1 6470 9.13% 570
NW_021160222.1 3120 4.09% 272
NW_021160223.1 20270 24.33% 1710
NW_021160225.1 8400 15.60% 705
NW_021160226.1 3380 9.38% 299
NW_021160228.1 3010 6.29% 253
NW_021160229.1 6710 13.98% 554
NW_021160231.1 6140 11.27% 512
NW_021160233.1 5590 8.65% 472
NW_021160234.1 20530 31.32% 1790
NW_021160236.1 6440 8.28% 551
NW_021160237.1 21950 25.61% 1810
NW_021160238.1 15960 15.28% 1353
NW_021160239.1 2170 7.44% 178
NW_021160242.1 2870 9.71% 251
NW_021160243.1 1450 4.60% 122
NW_021160244.1 22070 62.66% 2010
NW_021160245.1 2270 5.19% 194
NW_021160248.1 3210 4.29% 273
NW_021160249.1 8890 11.74% 745
NW_021160250.1 3610 5.61% 305
NW_021160251.1 11540 13.67% 961
NW_021160252.1 15800 17.83% 1290
NW_021160255.1 3220 11.47% 261
NW_021160263.1 2040 3.88% 179
NW_021160266.1 3140 4.19% 292
NW_021160268.1 5140 7.59% 440
NW_021160270.1 5230 15.02% 439
NW_021160271.1 2230 6.42% 190
NW_021160272.1 4890 13.97% 431
NW_021160273.1 2610 6.49% 219
NW_021160277.1 750 1.67% 71
NW_021160278.1 6400 11.50% 518
NW_021160279.1 8360 12.67% 696
NW_021160282.1 19310 15.61% 1613
NW_021160284.1 1910 5.49% 161
NW_021160285.1 3830 8.59% 318
NW_021160291.1 1120 2.47% 104
NW_021160293.1 9750 18.46% 819
NW_021160294.1 13190 16.56% 1108
NW_021160295.1 6000 7.27% 514
NW_021160297.1 6500 11.56% 553
NW_021160298.1 3930 14.42% 329
NW_021160300.1 11870 19.06% 994
NW_021160305.1 2040 5.06% 176
NW_021160306.1 4960 12.57% 408
NW_021160307.1 8610 16.34% 719
NW_021160308.1 5950 11.03% 519
NW_021160310.1 25170 43.20% 2235
NW_021160311.1 18160 23.06% 1502
NW_021160312.1 15130 17.11% 1304
NW_021160313.1 14690 15.52% 1225
NW_021160319.1 6740 15.52% 572
NW_021160320.1 6120 11.65% 501
NW_021160324.1 12070 18.97% 1010
NW_021160325.1 9060 13.91% 771
NW_021160326.1 4500 6.91% 374
NW_021160327.1 9720 14.73% 816
NW_021160328.1 14650 23.13% 1268
NW_021160329.1 10670 19.87% 895
NW_021160338.1 2250 6.00% 192
NW_021160339.1 1010 2.62% 87
NW_021160341.1 6790 14.66% 568
NW_021160347.1 19000 11.50% 1605
NW_021160353.1 6630 16.10% 547
NW_021160354.1 2400 5.72% 205
NW_021160355.1 4540 8.17% 380
NW_021160356.1 5070 6.64% 437
NW_021160357.1 1630 5.35% 126
NW_021160358.1 6820 17.29% 558
NW_021160359.1 7460 18.17% 626
NW_021160361.1 2180 4.63% 192
NW_021160362.1 3760 7.01% 308
NW_021160363.1 8990 14.76% 758
NW_021160364.1 8370 13.54% 692
NW_021160365.1 8660 13.04% 737
NW_021160366.1 9350 13.12% 799
NW_021160367.1 19360 25.34% 1642
NW_021160368.1 2820 3.57% 245
NW_021160369.1 7880 9.64% 655
NW_021160370.1 13040 14.57% 1072
NW_021160371.1 6380 7.06% 554
NW_021160372.1 27620 20.54% 2314
NW_021160373.1 14140 24.32% 1171
NW_021160374.1 14230 11.45% 1194
NW_021160375.1 36440 19.82% 2988
NW_021160376.1 175320 20.32% 14281
NW_021160381.1 1540 3.16% 134
NW_021160383.1 24637 35.71% 2093
NW_021160384.1 3700 4.65% 328
NW_021160401.1 2200 13.52% 169
NW_021160410.1 6740 40.96% 578
NW_021160417.1 2460 4.35% 191
NW_021160452.1 2100 12.40% 174
NW_021160482.1 430 2.49% 36
NW_021160484.1 2980 17.13% 242
NW_021160495.1 151310 18.37% 12660
NW_021160514.1 2310 12.82% 186
NW_021160523.1 1210 6.69% 103
NW_021160525.1 2710 14.94% 223
NW_021160535.1 2790 15.22% 219
NW_021160549.1 2240 12.07% 194
NW_021160573.1 5870 30.84% 502
NW_021160589.1 250 1.30% 21
NW_021160606.1 64890 6.45% 5523
NW_021160623.1 540 2.73% 49
NW_021160625.1 170 0.86% 16
NW_021160629.1 470 2.36% 38
NW_021160635.1 480 2.39% 44
NW_021160655.1 3990 19.39% 328
NW_021160656.1 1750 8.55% 146
NW_021160678.1 470 2.26% 44
NW_021160682.1 12445 60.05% 1062
NW_021160688.1 4780 23.41% 406
NW_021160701.1 7130 33.61% 630
NW_021160725.1 570 2.63% 53
NW_021160726.1 14010 64.42% 1311
NW_021160734.1 680 3.12% 60
NW_021160757.1 70 0.32% 6
NW_021160770.1 13810 61.02% 1282
NW_021160772.1 2470 10.89% 206
NW_021160805.1 6310 26.91% 518
NW_021160821.1 420 1.76% 38
NW_021160827.1 57710 7.87% 4953
NW_021160832.1 730 3.03% 62
NW_021160834.1 2520 10.45% 212
NW_021160835.1 40 0.24% 4
NW_021160848.1 270 1.11% 25
NW_021160868.1 150 0.61% 13
NW_021160890.1 2060 8.16% 178
NW_021160903.1 6066 22.90% 503
NW_021160919.1 1410 5.41% 122
NW_021160925.1 620 2.38% 55
NW_021160946.1 3070 11.60% 264
NW_021160955.1 2310 8.70% 192
NW_021160961.1 1870 6.99% 162
NW_021160976.1 6840 25.13% 591
NW_021160983.1 310 1.14% 21
NW_021160986.1 50 0.18% 5
NW_021161026.1 100 0.36% 10
NW_021161033.1 110 0.38% 11
NW_021161038.1 1810 6.69% 162
NW_021161041.1 1990 6.98% 159
NW_021161043.1 600 2.06% 56
NW_021161046.1 4290 14.54% 375
NW_021161062.1 430 1.45% 35
NW_021161066.1 7890 26.44% 653
NW_021161106.1 6030 19.67% 484
NW_021161107.1 1820 5.92% 159
NW_021161113.1 5170 15.33% 431
NW_021161114.1 6300 20.42% 561
NW_021161131.1 230 0.74% 20
NW_021161133.1 7190 4.84% 599
NW_021161138.1 620 1.99% 52
NW_021161152.1 3820 12.14% 322
NW_021161164.1 3850 11.91% 328
NW_021161166.1 6570 20.22% 556
NW_021161184.1 1020 3.45% 90
NW_021161201.1 2200 6.63% 185
NW_021161211.1 5650 16.93% 475
NW_021161213.1 540 1.62% 50
NW_021161224.1 6710 19.91% 554
NW_021161226.1 4700 14.10% 394
NW_021161241.1 750 2.19% 69
NW_021161247.1 60 0.18% 5
NW_021161253.1 170 0.49% 16
NW_021161261.1 1710 4.89% 140
NW_021161269.1 10300 29.35% 852
NW_021161282.1 16260 41.83% 1387
NW_021161303.1 1430 3.97% 130
NW_021161305.1 820 2.27% 68
NW_021161307.1 1340 5.05% 115
NW_021161312.1 330 0.92% 29
NW_021161320.1 9150 9.31% 753
NW_021161336.1 3550 9.63% 312
NW_021161338.1 1760 4.73% 151
NW_021161340.1 2530 6.88% 214
NW_021161348.1 4600 12.29% 382
NW_021161355.1 6230 16.12% 533
NW_021161360.1 760 2.03% 70
NW_021161364.1 2940 7.70% 248
NW_021161377.1 14010 35.24% 1169
NW_021161379.1 130 0.34% 12
NW_021161380.1 330 1.04% 30
NW_021161385.1 480 1.24% 43
NW_021161392.1 8920 22.80% 768
NW_021161394.1 3910 10.07% 335
NW_021161396.1 390 1.00% 32
NW_021161399.1 3080 14.05% 262
NW_021161404.1 1310 3.32% 119
NW_021161413.1 2910 7.35% 247
NW_021161421.1 920 2.31% 86
NW_021161422.1 450 1.14% 40
NW_021161427.1 2850 7.11% 238
NW_021161433.1 850 2.10% 74
NW_021161437.1 1530 5.09% 130
NW_021161446.1 1010 2.47% 90
NW_021161463.1 70 0.17% 7
NW_021161468.1 2330 5.55% 195
NW_021161470.1 380 0.91% 35
NW_021161483.1 40 0.09% 4
NW_021161486.1 6480 15.22% 536
NW_021161494.1 910 2.12% 82
NW_021161497.1 1310 3.05% 107
NW_021161505.1 5500 12.76% 477
NW_021161507.1 5960 13.77% 499
NW_021161508.1 11614 26.91% 965
NW_021161519.1 7679 17.51% 630
NW_021161520.1 4070 9.44% 370
NW_021161523.1 2320 5.36% 206
NW_021161525.1 9870 22.42% 805
NW_021161526.1 5630 12.78% 491
NW_021161532.1 1370 3.08% 123
NW_021161535.1 850 1.90% 75
NW_021161537.1 12355 27.85% 1065
NW_021161545.1 13910 31.13% 1213
NW_021161552.1 1120 2.63% 93
NW_021161554.1 4704 10.42% 392
NW_021161561.1 8750 19.36% 724
NW_021161562.1 9920 21.82% 830
NW_021161567.1 2590 5.69% 221
NW_021161570.1 110 0.24% 11
NW_021161582.1 13010 28.32% 1083
NW_021161585.1 12810 27.80% 1084
NW_021161590.1 20410 44.36% 1723
NW_021161593.1 15970 34.32% 1330
NW_021161596.1 55710 10.33% 4732
NW_021161601.1 6410 13.63% 548
NW_021161608.1 1860 3.98% 156
NW_021161609.1 620 1.32% 50
NW_021161614.1 3020 6.33% 259
NW_021161616.1 6010 12.56% 531
NW_021161617.1 580 1.21% 50
NW_021161627.1 5570 16.66% 471
NW_021161633.1 17390 35.19% 1450
NW_021161642.1 5090 10.23% 415
NW_021161648.1 21290 41.84% 1879
NW_021161679.1 5910 11.34% 494
NW_021161680.1 3350 6.47% 277
NW_021161686.1 19420 14.35% 1647
NW_021161694.1 2550 5.61% 219
NW_021161695.1 4410 8.25% 380
NW_021161696.1 2770 5.22% 251
NW_021161699.1 9104 18.83% 761
NW_021161700.1 440 0.83% 39
NW_021161713.1 940 1.74% 89
NW_021161715.1 750 1.38% 64
NW_021161718.1 10160 18.65% 833
NW_021161725.1 3470 11.03% 292
NW_021161737.1 5400 9.67% 474
NW_021161743.1 2500 4.47% 217
NW_021161747.1 420 0.74% 38
NW_021161754.1 19070 33.34% 1595
NW_021161759.1 1060 1.84% 96
NW_021161767.1 7270 7.12% 613
NW_021161769.1 3180 5.48% 269
NW_021161772.1 4170 5.64% 359
NW_021161784.1 1410 27.39% 118
NW_021161790.1 16200 26.84% 1333
NW_021161794.1 1230 2.04% 107
NW_021161796.1 3000 4.97% 249
NW_021161798.1 4560 9.69% 394
NW_021161830.1 8870 19.82% 749
NW_021161832.1 2820 4.45% 247
NW_021161839.1 2850 4.45% 247
NW_021161842.1 8120 12.45% 685
NW_021161843.1 3600 5.53% 311
NW_021161845.1 19030 29.10% 1639
NW_021161850.1 339661 30.40% 28108
NW_021161853.1 10940 16.58% 925
NW_021161857.1 7520 11.33% 624
NW_021161862.1 2990 4.52% 241
NW_021161876.1 11010 16.12% 906
NW_021161878.1 10270 15.10% 845
NW_021161881.1 9380 15.57% 786
NW_021161888.1 11100 15.99% 958
NW_021161902.1 12590 19.43% 1030
NW_021161927.1 5640 7.54% 481
NW_021161934.1 7480 9.93% 638
NW_021161939.1 16120 21.28% 1405
NW_021161954.1 8760 11.36% 729
NW_021161955.1 7290 9.41% 593
NW_021161956.1 11930 15.62% 995
NW_021161958.1 20240 25.77% 1631
NW_021161961.1 10550 13.49% 897
NW_021161962.1 2280 2.85% 178
NW_021161965.1 9480 11.99% 797
NW_021161996.1 3630 4.22% 318
NW_021162004.1 1330 4.68% 116
NW_021162007.1 5690 6.48% 489
NW_021162009.1 35670 40.92% 3048
NW_021162025.1 9100 10.21% 766
NW_021162035.1 4730 5.07% 399
NW_021162047.1 7180 7.50% 621
NW_021162055.1 17650 17.74% 1471
NW_021162083.1 17290 10.03% 1467
NW_021162091.1 18750 16.53% 1607
NW_021162100.1 15880 12.63% 1408
NW_021162108.1 15790 49.54% 1330
NW_021162157.1 3170 5.26% 264
NW_021162208.1 1610 0.65% 150
NW_021162222.1 3220 8.51% 278
NW_021162226.1 1850 4.24% 161
NW_021162246.1 44530 42.15% 3600
NW_021162251.1 36870 51.63% 3058
NW_021162253.1 270 0.86% 21
NW_021162263.1 570 2.15% 52
NW_021162265.1 12720 32.91% 1072
NW_021162274.1 45740 45.05% 3867
NW_021162277.1 3400 13.67% 291
NW_021162460.1 20 0.27% 2
NW_021162463.1 700 9.27% 56
NW_021162495.1 680 10.32% 50
NW_021162553.1 660 7.62% 52
NW_021162593.1 320 3.44% 26
NW_021162599.1 5285 56.37% 459
NW_021162621.1 810 8.29% 70
NW_021162643.1 9555 37.60% 812
NW_021162814.1 800 6.45% 66
NW_021162871.1 1500 10.80% 128
NW_021163002.1 140 0.88% 14
2537 contigs with no values (90199233 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 129348702 2 140 12.01 10
global segment-length histogram

Files

Filename Size md5
VTR-HTH_Glut.bw 765.98 MB 9fc380015d8c084770d6b57665ed8619
genomic_resource.yaml 1.11 KB 97f9d8fa68ea43f26817afe4f740761c
statistics/