Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/macaque/ZI-HTH_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for ZI-HTH_GABA cell type from macaque
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: ZI-HTH_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_macaque_ZI-HTH_GABA float

johansen2025Crossspecies_atac_macaque_ZI-HTH_GABA

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_macaque_ZI-HTH_GABA [0.0354, 159]
n
1,744,345,929
mean
0.136
sd
0.273

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 174434592958.71% 147833939
NC_005943.1 2140 12.92% 205
NC_027914.1 1068730 9.09% 93658
NC_041754.1 146304740 65.43% 12489007
NC_041755.1 120011610 61.17% 10126049
NC_041756.1 115431277 62.30% 9778729
NC_041757.1 101484520 59.71% 8534780
NC_041758.1 102764970 54.86% 8570726
NC_041759.1 106140340 59.27% 8927481
NC_041760.1 110007690 64.76% 9364963
NC_041761.1 87183050 59.85% 7338919
NC_041762.1 85454790 63.71% 7258220
NC_041763.1 68669120 69.00% 5930682
NC_041764.1 83106870 62.46% 7055722
NC_041765.1 78572126 60.42% 6610580
NC_041766.1 68239550 62.76% 5781776
NC_041767.1 82790686 64.65% 7078614
NC_041768.1 70365270 62.11% 5981134
NC_041769.1 56281224 70.68% 4894003
NC_041770.1 54186360 56.78% 4549646
NC_041771.1 44496210 59.75% 3737771
NC_041772.1 38126750 65.38% 3333587
NC_041773.1 53471475 69.32% 4613220
NC_041774.1 65704900 42.84% 5406211
NW_021160097.1 530 1.43% 49
NW_021160098.1 3840 9.60% 318
NW_021160099.1 1790 4.43% 153
NW_021160102.1 6430 12.81% 544
NW_021160105.1 4320 7.87% 369
NW_021160106.1 11370 20.47% 923
NW_021160107.1 3220 5.79% 282
NW_021160109.1 10990 13.35% 909
NW_021160110.1 26200 22.18% 2224
NW_021160111.1 34410 25.87% 2815
NW_021160113.1 62770 53.96% 5496
NW_021160114.1 19040 28.89% 1601
NW_021160116.1 1930 5.45% 175
NW_021160121.1 4690 5.44% 396
NW_021160122.1 12020 13.06% 1019
NW_021160123.1 7170 13.55% 626
NW_021160125.1 520 2.06% 51
NW_021160136.1 7890 13.21% 664
NW_021160140.1 15740 12.08% 1327
NW_021160141.1 17950 13.38% 1488
NW_021160142.1 25140 52.58% 2154
NW_021160144.1 228240 18.56% 19605
NW_021160145.1 3160 11.76% 255
NW_021160147.1 4310 14.35% 359
NW_021160148.1 6880 20.05% 598
NW_021160150.1 3340 8.91% 295
NW_021160155.1 6010 11.02% 521
NW_021160158.1 6960 9.24% 561
NW_021160159.1 14900 17.37% 1269
NW_021160161.1 162082 21.95% 13431
NW_021160167.1 1410 3.73% 123
NW_021160168.1 1190 2.86% 102
NW_021160175.1 101730 54.95% 8476
NW_021160179.1 3250 8.36% 281
NW_021160182.1 12240 21.07% 1046
NW_021160184.1 5520 9.00% 482
NW_021160185.1 3030 4.88% 276
NW_021160186.1 16780 26.02% 1396
NW_021160187.1 4810 6.30% 409
NW_021160188.1 11500 13.86% 944
NW_021160189.1 13600 13.42% 1162
NW_021160190.1 9650 27.01% 813
NW_021160191.1 2530 9.08% 208
NW_021160193.1 1040 3.34% 92
NW_021160196.1 16095 34.91% 1345
NW_021160197.1 7030 13.57% 589
NW_021160199.1 5230 9.35% 444
NW_021160200.1 3030 5.14% 261
NW_021160201.1 16710 27.19% 1380
NW_021160202.1 4180 6.38% 344
NW_021160203.1 13720 19.00% 1179
NW_021160204.1 10630 14.59% 891
NW_021160205.1 7380 10.08% 631
NW_021160206.1 9220 11.01% 776
NW_021160207.1 8390 8.49% 714
NW_021160209.1 43390 6.48% 3602
NW_021160211.1 14710 11.03% 1262
NW_021160220.1 14090 21.12% 1195
NW_021160221.1 8310 11.73% 699
NW_021160222.1 4180 5.47% 348
NW_021160223.1 22530 27.04% 1921
NW_021160225.1 11510 21.38% 964
NW_021160226.1 4180 11.60% 372
NW_021160228.1 5140 10.75% 437
NW_021160229.1 7490 15.61% 621
NW_021160231.1 6890 12.64% 592
NW_021160233.1 6760 10.46% 579
NW_021160234.1 21830 33.30% 1926
NW_021160236.1 8570 11.02% 745
NW_021160237.1 30500 35.58% 2599
NW_021160238.1 20070 19.22% 1717
NW_021160239.1 3180 10.90% 267
NW_021160242.1 3360 11.37% 279
NW_021160243.1 1440 4.57% 131
NW_021160244.1 22590 64.14% 2108
NW_021160245.1 3610 8.25% 306
NW_021160248.1 4630 6.19% 407
NW_021160249.1 10610 14.02% 900
NW_021160250.1 5010 7.79% 409
NW_021160251.1 14980 17.74% 1211
NW_021160252.1 17430 19.66% 1459
NW_021160255.1 3830 13.64% 333
NW_021160263.1 2560 4.86% 228
NW_021160266.1 4780 6.37% 400
NW_021160268.1 6010 8.87% 510
NW_021160270.1 6150 17.66% 517
NW_021160271.1 2350 6.76% 204
NW_021160272.1 5650 16.15% 498
NW_021160273.1 3320 8.26% 274
NW_021160277.1 1140 2.54% 103
NW_021160278.1 8330 14.97% 684
NW_021160279.1 10570 16.02% 872
NW_021160282.1 20430 16.51% 1687
NW_021160284.1 1850 5.32% 140
NW_021160285.1 4460 10.00% 378
NW_021160291.1 1260 2.78% 111
NW_021160293.1 10450 19.78% 877
NW_021160294.1 15300 19.21% 1236
NW_021160295.1 6910 8.37% 599
NW_021160297.1 7520 13.37% 634
NW_021160298.1 5340 19.60% 456
NW_021160300.1 12540 20.14% 1086
NW_021160305.1 3100 7.69% 262
NW_021160306.1 3540 8.97% 318
NW_021160307.1 8100 15.37% 670
NW_021160308.1 4010 7.44% 342
NW_021160310.1 27900 47.89% 2464
NW_021160311.1 21930 27.85% 1847
NW_021160312.1 17770 20.10% 1514
NW_021160313.1 17970 18.99% 1509
NW_021160319.1 7760 17.86% 643
NW_021160320.1 7290 13.87% 622
NW_021160324.1 13550 21.30% 1138
NW_021160325.1 13920 21.37% 1169
NW_021160326.1 4520 6.94% 385
NW_021160327.1 10890 16.51% 936
NW_021160328.1 14970 23.64% 1347
NW_021160329.1 13080 24.36% 1118
NW_021160338.1 4100 10.93% 340
NW_021160339.1 1390 3.61% 119
NW_021160341.1 9150 19.76% 743
NW_021160347.1 25250 15.28% 2148
NW_021160353.1 8430 20.47% 698
NW_021160354.1 3600 8.58% 293
NW_021160355.1 5360 9.65% 451
NW_021160356.1 5820 7.63% 496
NW_021160357.1 2080 6.83% 173
NW_021160358.1 8640 21.90% 719
NW_021160359.1 7900 19.24% 658
NW_021160361.1 2910 6.18% 248
NW_021160362.1 3820 7.12% 346
NW_021160363.1 10970 18.00% 930
NW_021160364.1 10010 16.19% 857
NW_021160365.1 11240 16.92% 957
NW_021160366.1 12590 17.67% 1031
NW_021160367.1 21090 27.61% 1798
NW_021160368.1 4060 5.14% 350
NW_021160369.1 9420 11.52% 793
NW_021160370.1 16160 18.06% 1351
NW_021160371.1 8730 9.66% 740
NW_021160372.1 34430 25.61% 2820
NW_021160373.1 15990 27.50% 1349
NW_021160374.1 18660 15.01% 1564
NW_021160375.1 45640 24.83% 3808
NW_021160376.1 213270 24.72% 17576
NW_021160381.1 1340 2.75% 114
NW_021160383.1 29010 42.05% 2490
NW_021160384.1 5500 6.91% 478
NW_021160401.1 2180 13.40% 185
NW_021160410.1 7660 46.55% 675
NW_021160417.1 2960 5.23% 240
NW_021160452.1 2580 15.24% 226
NW_021160482.1 930 5.38% 75
NW_021160484.1 3680 21.15% 292
NW_021160495.1 212380 25.78% 17569
NW_021160514.1 2700 14.99% 222
NW_021160523.1 1230 6.80% 101
NW_021160525.1 3580 19.73% 299
NW_021160535.1 3720 20.30% 303
NW_021160549.1 2760 14.87% 235
NW_021160573.1 6500 34.15% 561
NW_021160589.1 240 1.25% 21
NW_021160606.1 87670 8.72% 7336
NW_021160623.1 710 3.59% 60
NW_021160625.1 190 0.96% 18
NW_021160629.1 290 1.46% 25
NW_021160635.1 760 3.78% 68
NW_021160655.1 3730 18.13% 300
NW_021160656.1 1630 7.97% 133
NW_021160678.1 650 3.13% 59
NW_021160682.1 12895 62.22% 1117
NW_021160688.1 5850 28.65% 500
NW_021160701.1 7900 37.24% 706
NW_021160725.1 1110 5.13% 96
NW_021160726.1 14360 66.03% 1359
NW_021160734.1 1220 5.61% 105
NW_021160737.1 20 0.09% 2
NW_021160757.1 70 0.32% 7
NW_021160770.1 14320 63.27% 1358
NW_021160772.1 2830 12.48% 232
NW_021160805.1 7540 32.16% 641
NW_021160821.1 780 3.26% 66
NW_021160827.1 64630 8.81% 5571
NW_021160832.1 1070 4.44% 91
NW_021160834.1 2800 11.61% 238
NW_021160835.1 40 0.24% 4
NW_021160848.1 470 1.93% 39
NW_021160868.1 80 0.33% 8
NW_021160890.1 3340 13.23% 284
NW_021160903.1 6466 24.41% 523
NW_021160919.1 1440 5.53% 117
NW_021160925.1 830 3.18% 70
NW_021160946.1 3400 12.84% 288
NW_021160955.1 2900 10.92% 235
NW_021160961.1 4750 17.75% 392
NW_021160976.1 8650 31.78% 717
NW_021160983.1 120 0.44% 12
NW_021160986.1 20 0.07% 2
NW_021161026.1 180 0.65% 16
NW_021161033.1 120 0.42% 12
NW_021161038.1 1750 6.47% 148
NW_021161041.1 1940 6.81% 167
NW_021161043.1 860 2.95% 75
NW_021161046.1 4990 16.91% 444
NW_021161062.1 610 2.06% 53
NW_021161066.1 9470 31.74% 767
NW_021161106.1 8860 28.91% 753
NW_021161107.1 1940 6.31% 157
NW_021161113.1 7160 21.23% 599
NW_021161114.1 6610 21.43% 600
NW_021161131.1 330 1.06% 32
NW_021161133.1 8220 5.53% 701
NW_021161138.1 630 2.02% 55
NW_021161152.1 5300 16.84% 448
NW_021161164.1 4680 14.48% 408
NW_021161166.1 7310 22.49% 615
NW_021161184.1 1410 4.77% 126
NW_021161201.1 2780 8.37% 237
NW_021161211.1 4310 12.92% 356
NW_021161213.1 630 1.89% 57
NW_021161224.1 6770 20.09% 568
NW_021161226.1 5590 16.77% 491
NW_021161241.1 1280 3.73% 117
NW_021161247.1 100 0.29% 10
NW_021161253.1 190 0.55% 18
NW_021161261.1 1980 5.66% 183
NW_021161269.1 12510 35.64% 1064
NW_021161274.1 20 0.06% 2
NW_021161282.1 17980 46.25% 1591
NW_021161303.1 2300 6.39% 196
NW_021161305.1 1120 3.11% 97
NW_021161307.1 1720 6.48% 148
NW_021161312.1 410 1.15% 38
NW_021161320.1 11210 11.41% 945
NW_021161336.1 3410 9.25% 295
NW_021161338.1 2430 6.53% 206
NW_021161340.1 2630 7.15% 215
NW_021161348.1 6270 16.75% 518
NW_021161355.1 8970 23.22% 760
NW_021161360.1 740 1.98% 65
NW_021161364.1 3150 8.25% 267
NW_021161377.1 14750 37.10% 1250
NW_021161379.1 380 0.99% 35
NW_021161380.1 560 1.76% 49
NW_021161385.1 830 2.14% 70
NW_021161392.1 9920 25.36% 867
NW_021161394.1 4150 10.69% 350
NW_021161396.1 440 1.13% 39
NW_021161399.1 3580 16.33% 295
NW_021161404.1 1260 3.20% 114
NW_021161413.1 4010 10.12% 346
NW_021161421.1 1150 2.89% 102
NW_021161422.1 540 1.36% 47
NW_021161427.1 3550 8.85% 288
NW_021161433.1 370 0.91% 32
NW_021161437.1 2070 6.89% 174
NW_021161446.1 1660 4.06% 140
NW_021161463.1 60 0.14% 6
NW_021161468.1 2750 6.56% 240
NW_021161470.1 690 1.65% 62
NW_021161483.1 40 0.09% 4
NW_021161486.1 7070 16.61% 601
NW_021161494.1 1390 3.25% 116
NW_021161497.1 1680 3.91% 151
NW_021161505.1 7180 16.66% 618
NW_021161507.1 9550 22.06% 793
NW_021161508.1 12784 29.62% 1051
NW_021161519.1 10070 22.96% 818
NW_021161520.1 3940 9.14% 371
NW_021161523.1 3250 7.51% 257
NW_021161525.1 8080 18.35% 626
NW_021161526.1 6980 15.85% 605
NW_021161532.1 2490 5.60% 204
NW_021161535.1 1290 2.89% 117
NW_021161537.1 14270 32.17% 1234
NW_021161545.1 14890 33.33% 1355
NW_021161552.1 1930 4.54% 165
NW_021161554.1 6220 13.78% 499
NW_021161561.1 10290 22.77% 869
NW_021161562.1 11900 26.17% 1024
NW_021161567.1 3510 7.71% 284
NW_021161570.1 100 0.22% 10
NW_021161582.1 12370 26.93% 1063
NW_021161585.1 13020 28.25% 1112
NW_021161590.1 22890 49.75% 1947
NW_021161593.1 19270 41.41% 1636
NW_021161596.1 68530 12.71% 5776
NW_021161601.1 7170 15.24% 591
NW_021161608.1 2040 4.37% 176
NW_021161609.1 830 1.76% 68
NW_021161614.1 2980 6.25% 252
NW_021161616.1 7847 16.40% 680
NW_021161617.1 870 1.81% 73
NW_021161627.1 6920 20.70% 601
NW_021161633.1 24000 48.57% 1995
NW_021161642.1 6670 13.40% 551
NW_021161648.1 22880 44.97% 2041
NW_021161679.1 7020 13.47% 573
NW_021161680.1 4200 8.12% 359
NW_021161686.1 23480 17.36% 1996
NW_021161694.1 2700 5.93% 238
NW_021161695.1 5210 9.75% 457
NW_021161696.1 3380 6.37% 297
NW_021161699.1 11164 23.09% 940
NW_021161700.1 510 0.96% 45
NW_021161713.1 1310 2.43% 116
NW_021161715.1 980 1.80% 84
NW_021161718.1 11940 21.91% 984
NW_021161725.1 5910 18.78% 500
NW_021161737.1 6850 12.26% 589
NW_021161743.1 3060 5.47% 261
NW_021161747.1 500 0.89% 41
NW_021161754.1 22390 39.15% 1946
NW_021161759.1 1620 2.82% 146
NW_021161767.1 10790 10.57% 905
NW_021161769.1 4680 8.07% 391
NW_021161772.1 5950 8.05% 516
NW_021161784.1 1828 35.51% 149
NW_021161790.1 16320 27.04% 1369
NW_021161794.1 1130 1.87% 101
NW_021161796.1 2870 4.75% 254
NW_021161798.1 5320 11.30% 452
NW_021161830.1 12590 28.13% 1045
NW_021161832.1 3890 6.14% 329
NW_021161839.1 3610 5.64% 310
NW_021161842.1 8200 12.57% 716
NW_021161843.1 4700 7.22% 407
NW_021161845.1 24700 37.77% 2084
NW_021161850.1 369450 33.07% 30595
NW_021161853.1 12450 18.87% 1038
NW_021161857.1 10990 16.56% 926
NW_021161862.1 2680 4.05% 233
NW_021161876.1 13660 20.01% 1125
NW_021161878.1 11670 17.16% 997
NW_021161881.1 11210 18.61% 922
NW_021161888.1 15050 21.68% 1270
NW_021161902.1 12500 19.29% 1055
NW_021161927.1 8550 11.43% 706
NW_021161934.1 8800 11.68% 726
NW_021161939.1 20200 26.67% 1717
NW_021161954.1 10020 12.99% 852
NW_021161955.1 10560 13.62% 874
NW_021161956.1 12550 16.43% 1094
NW_021161958.1 27290 34.75% 2209
NW_021161961.1 14840 18.98% 1247
NW_021161962.1 3100 3.88% 251
NW_021161965.1 10100 12.78% 837
NW_021161996.1 4670 5.43% 387
NW_021162004.1 1980 6.97% 164
NW_021162007.1 7310 8.32% 596
NW_021162009.1 39480 45.29% 3430
NW_021162025.1 10260 11.51% 880
NW_021162035.1 4460 4.78% 392
NW_021162047.1 8900 9.30% 754
NW_021162055.1 22640 22.76% 1891
NW_021162083.1 18720 10.86% 1577
NW_021162091.1 20720 18.27% 1765
NW_021162100.1 17490 13.91% 1573
NW_021162108.1 17280 54.22% 1471
NW_021162157.1 3520 5.84% 300
NW_021162185.1 40 0.45% 4
NW_021162208.1 1310 0.53% 126
NW_021162222.1 6320 16.70% 524
NW_021162226.1 1720 3.94% 155
NW_021162246.1 52560 49.75% 4280
NW_021162251.1 39700 55.59% 3398
NW_021162253.1 560 1.79% 48
NW_021162263.1 1180 4.45% 104
NW_021162265.1 13340 34.51% 1115
NW_021162274.1 47790 47.06% 4036
NW_021162277.1 4440 17.85% 371
NW_021162460.1 20 0.27% 2
NW_021162463.1 610 8.08% 55
NW_021162495.1 1120 17.00% 102
NW_021162553.1 490 5.66% 47
NW_021162593.1 450 4.84% 41
NW_021162599.1 5695 60.75% 484
NW_021162621.1 1120 11.46% 84
NW_021162643.1 11255 44.28% 950
NW_021162814.1 570 4.60% 50
NW_021162871.1 1470 10.59% 127
NW_021163002.1 120 0.76% 10
2534 contigs with no values (90134059 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 147833939 2 140 11.8 10
global segment-length histogram

Files

Filename Size md5
ZI-HTH_GABA.bw 854.24 MB 26ade5863e1b53d6adbedae0683cc067
genomic_resource.yaml 1.1 KB a91559c667bbb0dafdeb2cccc30827c4
statistics/