Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/marmoset/OB_Dopa-GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for OB_Dopa-GABA cell type from marmoset
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: OB_Dopa-GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_marmoset_OB_Dopa-GABA float

johansen2025Crossspecies_atac_marmoset_OB_Dopa-GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_marmoset_OB_Dopa-GABA [0.173, 3.64]
n
50,433,785
mean
0.198
sd
0.0914

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 50433785 4744085
chr1 4143920 1.90% 389561
chr2 3152620 1.54% 297246
chr3 2488790 1.30% 237421
chr4 2659640 1.53% 251658
chr5 4063800 2.47% 377988
chr6 2731760 1.70% 258640
chr7 3254950 2.07% 305345
chr8 1998040 1.58% 189274
chr9 2482090 1.85% 232904
chr10 2648790 1.92% 248934
chr11 2694780 2.08% 252166
chr12 2491610 2.00% 233035
chr13 2111930 1.78% 199900
chr14 1916610 1.71% 180698
chr15 1996440 2.01% 188433
chr16 1648900 1.69% 156015
chr17 1180470 1.58% 112087
chr18 911790 1.94% 85263
chr19 1070170 2.08% 100379
chr20 936110 2.05% 87582
chr21 833970 1.63% 79123
chr22 1788570 3.49% 162527
chrUn_NW_026528016v1 20 2
chrUn_NW_026528017v1 80 8
chrUn_NW_026528021v1 460 46
chrUn_NW_026528026v1 250 25
chrUn_NW_026528029v1 160 15
chrUn_NW_026528038v1 140 14
chrUn_NW_026528039v1 240 24
chrUn_NW_026528065v1 110 11
chrUn_NW_026528075v1 20 2
chrUn_NW_026528103v1 20 2
chrUn_NW_026528125v1 60 6
chrUn_NW_026528140v1 100 10
chrUn_NW_026528210v1 60 6
chrUn_NW_026528215v1 80 8
chrUn_NW_026528225v1 60 6
chrUn_NW_026528226v1 70 7
chrUn_NW_026528228v1 40 4
chrUn_NW_026528230v1 80 8
chrUn_NW_026528232v1 260 26
chrUn_NW_026528259v1 20 2
chrUn_NW_026528278v1 120 12
chrUn_NW_026528295v1 100 10
chrUn_NW_026528296v1 3270 308
chrUn_NW_026528310v1 60 6
chrUn_NW_026528338v1 40 4
chrUn_NW_026528347v1 20 2
chrUn_NW_026528350v1 20 2
chrUn_NW_026528353v1 20 2
chrUn_NW_026528358v1 20 2
chrUn_NW_026528363v1 60 6
chrUn_NW_026528370v1 20 2
chrUn_NW_026528371v1 220 22
chrUn_NW_026528372v1 20 2
chrUn_NW_026528373v1 140 13
chrUn_NW_026528384v1 40 4
chrUn_NW_026528390v1 40 4
chrUn_NW_026528423v1 40 4
chrUn_NW_026528431v1 20 2
chrUn_NW_026528432v1 140 14
chrUn_NW_026528433v1 1140 109
chrUn_NW_026528480v1 120 12
chrUn_NW_026528558v1 480 48
chrUn_NW_026528590v1 440 44
chrUn_NW_026528596v1 720 69
chrUn_NW_026528611v1 20 2
chrUn_NW_026528621v1 60 5
chrUn_NW_026528631v1 100 9
chrUn_NW_026528634v1 140 14
chrUn_NW_026528644v1 20 2
chrUn_NW_026528650v1 20 2
chrUn_NW_026528670v1 20 2
chrUn_NW_026528708v1 20 2
chrUn_NW_026528719v1 240 24
chrUn_NW_026528745v1 40 4
chrUn_NW_026528786v1 20 2
chrUn_NW_026528788v1 20 2
chrUn_NW_026528793v1 120 12
chrUn_NW_026528795v1 60 6
chrUn_NW_026528796v1 120 12
chrUn_NW_026528797v1 1180 117
chrUn_NW_026528798v1 500 47
chrUn_NW_026528799v1 50 5
chrUn_NW_026528880v1 20 2
chrUn_NW_026528888v1 20 2
chrUn_NW_026528891v1 20 2
chrUn_NW_026528893v1 20 2
chrUn_NW_026528894v1 60 6
chrUn_NW_026528900v1 20 2
chrUn_NW_026528903v1 160 16
chrUn_NW_026528917v1 100 10
chrUn_NW_026528926v1 40 4
chrUn_NW_026528928v1 220 22
chrUn_NW_026528937v1 40 4
chrUn_NW_026528952v1 20 2
chrUn_NW_026528957v1 260 26
chrUn_NW_026528960v1 180 18
chrUn_NW_026528975v1 40 4
chrUn_NW_026528984v1 20 2
chrUn_NW_026528988v1 80 8
chrUn_NW_026528996v1 20 2
chrUn_NW_026529007v1 100 8
chrUn_NW_026529008v1 1290 122
chrUn_NW_026529013v1 20 2
chrUn_NW_026529015v1 20 2
chrUn_NW_026529016v1 410 41
chrUn_NW_026529060v1 355 35
chrUn_NW_026529081v1 40 4
chrUn_NW_026529085v1 200 20
chrX 1193170 0.81% 114578
chrX_NW_026527892v1_random 60 6
chrX_NW_026527894v1_random 160 16
chrX_NW_026527897v1_random 110 11
chrY 13220 0.16% 1256
chrY_NW_026527913v1_random 160 16
chrY_NW_026527914v1_random 370 37
chrY_NW_026527938v1_random 160 16
chrY_NW_026527949v1_random 360 35
chrY_NW_026527950v1_random 300 30
chrY_NW_026527951v1_random 20 2
chrY_NW_026527956v1_random 400 30
chrY_NW_026527958v1_random 320 27
chrY_NW_026527960v1_random 20 2
chrY_NW_026527961v1_random 60 6
chrY_NW_026527966v1_random 2720 241
chrY_NW_026527967v1_random 20 2
chrY_NW_026527968v1_random 240 23

Segment lengths

segments min max mean median
segments 4744085 5 110 10.63 10
global segment-length histogram

Files

Filename Size md5
OB_Dopa-GABA.bw 39.87 MB adfa0279189a10196d8c60d61cc3a9f1
genomic_resource.yaml 1.11 KB 0e1d62abd1956b847f50fd74fa325265
statistics/