Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/marmoset/SN_SEMA5A_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for SN_SEMA5A_GABA cell type from marmoset
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: SN_SEMA5A_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_marmoset_SN_SEMA5A_GABA float

johansen2025Crossspecies_atac_marmoset_SN_SEMA5A_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_marmoset_SN_SEMA5A_GABA [0.0582, 2.44]
n
141,114,670
mean
0.0709
sd
0.0434

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 141114670 12884334
chr1 11024950 5.06% 1004994
chr2 9615590 4.70% 880723
chr3 7326140 3.82% 678881
chr4 7691780 4.42% 707516
chr5 10991920 6.69% 990379
chr6 7683430 4.77% 705169
chr7 9265110 5.88% 841821
chr8 5645320 4.45% 519998
chr9 6989310 5.21% 636501
chr10 7377730 5.36% 672243
chr11 7392670 5.70% 670077
chr12 7500970 6.03% 679651
chr13 5791530 4.87% 530627
chr14 5388630 4.81% 493576
chr15 5360200 5.40% 489460
chr16 4517510 4.62% 415251
chr17 3264770 4.36% 301444
chr18 2656960 5.65% 240942
chr19 2893220 5.61% 263354
chr20 2754830 6.04% 249296
chr21 1993840 3.89% 183807
chr22 4274310 8.33% 378695
chrUn_NW_026528017v1 100 10
chrUn_NW_026528021v1 530 50
chrUn_NW_026528026v1 550 52
chrUn_NW_026528029v1 510 45
chrUn_NW_026528038v1 430 42
chrUn_NW_026528039v1 640 64
chrUn_NW_026528065v1 130 12
chrUn_NW_026528075v1 160 16
chrUn_NW_026528103v1 90 8
chrUn_NW_026528123v1 20 2
chrUn_NW_026528125v1 40 4
chrUn_NW_026528140v1 660 65
chrUn_NW_026528210v1 160 16
chrUn_NW_026528215v1 140 14
chrUn_NW_026528219v1 20 2
chrUn_NW_026528224v1 20 2
chrUn_NW_026528225v1 80 8
chrUn_NW_026528226v1 20 2
chrUn_NW_026528228v1 220 21
chrUn_NW_026528230v1 560 49
chrUn_NW_026528232v1 800 78
chrUn_NW_026528278v1 440 41
chrUn_NW_026528285v1 20 2
chrUn_NW_026528292v1 20 2
chrUn_NW_026528295v1 160 16
chrUn_NW_026528296v1 7960 707
chrUn_NW_026528310v1 200 20
chrUn_NW_026528332v1 40 4
chrUn_NW_026528339v1 20 2
chrUn_NW_026528345v1 40 4
chrUn_NW_026528347v1 40 4
chrUn_NW_026528350v1 40 4
chrUn_NW_026528353v1 20 2
chrUn_NW_026528356v1 40 4
chrUn_NW_026528363v1 160 15
chrUn_NW_026528370v1 170 17
chrUn_NW_026528371v1 1040 96
chrUn_NW_026528372v1 260 25
chrUn_NW_026528373v1 790 76
chrUn_NW_026528384v1 20 2
chrUn_NW_026528385v1 80 8
chrUn_NW_026528390v1 40 4
chrUn_NW_026528423v1 100 10
chrUn_NW_026528431v1 260 26
chrUn_NW_026528432v1 470 47
chrUn_NW_026528433v1 2570 238
chrUn_NW_026528480v1 80 8
chrUn_NW_026528558v1 1870 183
chrUn_NW_026528559v1 90 9
chrUn_NW_026528561v1 20 2
chrUn_NW_026528588v1 20 2
chrUn_NW_026528589v1 20 2
chrUn_NW_026528590v1 680 68
chrUn_NW_026528596v1 1370 135
chrUn_NW_026528609v1 20 2
chrUn_NW_026528621v1 340 32
chrUn_NW_026528631v1 150 14
chrUn_NW_026528634v1 290 29
chrUn_NW_026528661v1 20 2
chrUn_NW_026528677v1 40 4
chrUn_NW_026528719v1 640 64
chrUn_NW_026528737v1 40 3
chrUn_NW_026528750v1 20 2
chrUn_NW_026528752v1 20 2
chrUn_NW_026528755v1 120 12
chrUn_NW_026528772v1 20 2
chrUn_NW_026528775v1 100 10
chrUn_NW_026528793v1 100 10
chrUn_NW_026528795v1 100 10
chrUn_NW_026528796v1 270 26
chrUn_NW_026528797v1 3160 298
chrUn_NW_026528798v1 770 74
chrUn_NW_026528799v1 140 14
chrUn_NW_026528880v1 60 6
chrUn_NW_026528882v1 40 3
chrUn_NW_026528885v1 20 2
chrUn_NW_026528887v1 20 2
chrUn_NW_026528891v1 100 10
chrUn_NW_026528894v1 610 59
chrUn_NW_026528899v1 100 8
chrUn_NW_026528900v1 120 12
chrUn_NW_026528902v1 120 12
chrUn_NW_026528903v1 1260 122
chrUn_NW_026528917v1 150 14
chrUn_NW_026528926v1 190 17
chrUn_NW_026528928v1 1070 107
chrUn_NW_026528937v1 60 6
chrUn_NW_026528950v1 60 6
chrUn_NW_026528957v1 830 83
chrUn_NW_026528960v1 100 10
chrUn_NW_026528975v1 150 15
chrUn_NW_026528984v1 40 4
chrUn_NW_026528988v1 80 8
chrUn_NW_026528989v1 20 2
chrUn_NW_026528996v1 20 2
chrUn_NW_026529007v1 300 25
chrUn_NW_026529008v1 4110 378
chrUn_NW_026529013v1 140 14
chrUn_NW_026529015v1 330 33
chrUn_NW_026529016v1 1170 115
chrUn_NW_026529060v1 1530 139
chrUn_NW_026529081v1 250 25
chrUn_NW_026529085v1 440 44
chrX 3633390 2.45% 342372
chrX_NW_026527892v1_random 250 25
chrX_NW_026527894v1_random 950 93
chrX_NW_026527897v1_random 160 14
chrY 23760 0.29% 2198
chrY_NW_026527911v1_random 40 4
chrY_NW_026527913v1_random 60 6
chrY_NW_026527914v1_random 1200 114
chrY_NW_026527915v1_random 20 2
chrY_NW_026527919v1_random 80 8
chrY_NW_026527927v1_random 20 2
chrY_NW_026527938v1_random 460 46
chrY_NW_026527939v1_random 20 2
chrY_NW_026527942v1_random 20 2
chrY_NW_026527949v1_random 1560 143
chrY_NW_026527950v1_random 860 83
chrY_NW_026527951v1_random 80 8
chrY_NW_026527955v1_random 40 4
chrY_NW_026527956v1_random 400 37
chrY_NW_026527958v1_random 190 17
chrY_NW_026527960v1_random 20 2
chrY_NW_026527961v1_random 120 12
chrY_NW_026527966v1_random 3940 353
chrY_NW_026527967v1_random 160 16
chrY_NW_026527968v1_random 1130 112
chrY_NW_026527969v1_random 20 2
chrY_NW_026527980v1_random 120 12

Segment lengths

segments min max mean median
segments 12884334 10 110 10.95 10
global segment-length histogram

Files

Filename Size md5
SN_SEMA5A_GABA.bw 80.0 MB 959d24429dea97cb952cb424b91a4750
genomic_resource.yaml 1.12 KB 1a832a4001f3a3f131e7c05b5ab6a22f
statistics/