Resource

Id summary/liu2026Multiomics/atac_fragments/T014_b11_Heart_PCW18content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T014_b11_Heart_PCW18 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 11
  • modalities: ATAC
  • organ: Heart
  • pcw_age: 18
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T014_b11_Heart_PCW18
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T014
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL76_H06+D05+D03, CL74_H04+A12+D02, CL79_H12+B08+E01, CL76_H03+C08+D04, CL76_H06+C02+B08 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 27]
n
411,011,473
mean
1.22
sd
0.536

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 411011473
chr1 38062547
chr1_KI270706v1_random 2287
chr1_KI270707v1_random 238
chr1_KI270708v1_random 941
chr1_KI270709v1_random 1918
chr1_KI270710v1_random 314
chr1_KI270711v1_random 1010
chr1_KI270712v1_random 1277
chr1_KI270713v1_random 10442
chr1_KI270714v1_random 1705
chr2 31726785
chr2_KI270715v1_random 78
chr2_KI270716v1_random 184
chr3 26537956
chr3_GL000221v1_random 292
chr4 19855718
chr4_GL000008v2_random 2682
chr5 22455256
chr5_GL000208v1_random 1125
chr6 22975943
chr7 20280362
chr8 17905375
chr9 16855924
chr9_KI270717v1_random 344
chr9_KI270718v1_random 195
chr9_KI270719v1_random 1502
chr9_KI270720v1_random 674
chr10 19927446
chr11 21175805
chr11_KI270721v1_random 1494
chr12 19751237
chr13 10463481
chr14 12485057
chr14_GL000009v2_random 1563
chr14_GL000194v1_random 2853
chr14_GL000225v1_random 6455
chr14_KI270722v1_random 1628
chr14_KI270723v1_random 536
chr14_KI270724v1_random 585
chr14_KI270725v1_random 1132
chr14_KI270726v1_random 92
chr15 13045837
chr15_KI270727v1_random 424
chr16 13529473
chr16_KI270728v1_random 3062
chr17 18461217
chr17_GL000205v2_random 25651
chr17_KI270729v1_random 4231
chr17_KI270730v1_random 953
chr18 8917912
chr19 17513162
chr20 10044130
chr21 4163294
chr22 8181648
chr22_KI270731v1_random 935
chr22_KI270732v1_random 999
chr22_KI270733v1_random 74305
chr22_KI270734v1_random 1414
chr22_KI270735v1_random 1243
chr22_KI270736v1_random 3086
chr22_KI270737v1_random 391
chr22_KI270738v1_random 1087
chr22_KI270739v1_random 50
chrM 8300605
chrUn_GL000195v1 25393
chrUn_GL000213v1 160
chrUn_GL000214v1 796
chrUn_GL000216v2 3931
chrUn_GL000218v1 2482
chrUn_GL000219v1 29114
chrUn_GL000220v1 7396
chrUn_GL000224v1 3801
chrUn_GL000226v1 17
chrUn_KI270302v1 12
chrUn_KI270303v1 6
chrUn_KI270304v1 7
chrUn_KI270305v1 2
chrUn_KI270310v1 32
chrUn_KI270311v1 11
chrUn_KI270312v1 1
chrUn_KI270315v1 2
chrUn_KI270316v1 2
chrUn_KI270317v1 3
chrUn_KI270320v1 26
chrUn_KI270322v1 29
chrUn_KI270330v1 112
chrUn_KI270333v1 112
chrUn_KI270336v1 46
chrUn_KI270337v1 142
chrUn_KI270362v1 9
chrUn_KI270363v1 13
chrUn_KI270366v1 7
chrUn_KI270378v1 3
chrUn_KI270382v1 24
chrUn_KI270383v1 1
chrUn_KI270385v1 2
chrUn_KI270389v1 1
chrUn_KI270390v1 3
chrUn_KI270391v1 1
chrUn_KI270392v1 2
chrUn_KI270393v1 3
chrUn_KI270395v1 2
chrUn_KI270396v1 1
chrUn_KI270411v1 12
chrUn_KI270412v1 11
chrUn_KI270414v1 7
chrUn_KI270417v1 35
chrUn_KI270418v1 12
chrUn_KI270419v1 12
chrUn_KI270420v1 22
chrUn_KI270422v1 20
chrUn_KI270423v1 3
chrUn_KI270424v1 3
chrUn_KI270425v1 1
chrUn_KI270429v1 50
chrUn_KI270435v1 1312
chrUn_KI270438v1 13360
chrUn_KI270442v1 9491
chrUn_KI270448v1 170
chrUn_KI270465v1 32
chrUn_KI270466v1 931
chrUn_KI270467v1 2858
chrUn_KI270468v1 107
chrUn_KI270507v1 178
chrUn_KI270508v1 76
chrUn_KI270509v1 61
chrUn_KI270510v1 59
chrUn_KI270511v1 150
chrUn_KI270512v1 271
chrUn_KI270515v1 217
chrUn_KI270516v1 38
chrUn_KI270517v1 113
chrUn_KI270518v1 51
chrUn_KI270519v1 2139
chrUn_KI270521v1 90
chrUn_KI270522v1 45
chrUn_KI270529v1 4
chrUn_KI270538v1 1456
chrUn_KI270539v1 9
chrUn_KI270544v1 5
chrUn_KI270579v1 5
chrUn_KI270580v1 48
chrUn_KI270581v1 2
chrUn_KI270582v1 20
chrUn_KI270583v1 63
chrUn_KI270584v1 142
chrUn_KI270587v1 65
chrUn_KI270588v1 148
chrUn_KI270589v1 179
chrUn_KI270590v1 136
chrUn_KI270591v1 204
chrUn_KI270593v1 53
chrUn_KI270741v1 56
chrUn_KI270742v1 1490
chrUn_KI270743v1 1283
chrUn_KI270744v1 3012
chrUn_KI270745v1 35
chrUn_KI270746v1 1515
chrUn_KI270747v1 218
chrUn_KI270748v1 158
chrUn_KI270749v1 1337
chrUn_KI270750v1 1949
chrUn_KI270751v1 2091
chrUn_KI270753v1 141
chrUn_KI270754v1 315
chrUn_KI270755v1 117
chrUn_KI270756v1 647
chrUn_KI270757v1 778
chrX 7761255
chrY 349184
chrY_KI270740v1_random 162

Fragment lengths

fragments min max mean median
fragments 411011473 7 1992 219.83 157
global fragment-length histogram

Files

Filename Size md5
T014_b11_Heart_PCW18.fragments.tsv.gz 3.54 GB 4d5e1d77b5f4394bb518ea87f19d0862
T014_b11_Heart_PCW18.fragments.tsv.gz.tbi 1.41 MB 955723468bb5eeba8606a675e7ead6e4
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 8172e30d93350e84eaf39587d0555aa1
statistics/