Resource

Id summary/liu2026Multiomics/atac_fragments/T032_b11_Heart_PCW12content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T032_b11_Heart_PCW12 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 11
  • modalities: ATAC
  • organ: Heart
  • pcw_age: 12
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T032_b11_Heart_PCW12
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T032
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell

HISTOGRAM FOR cell CL75_G06+F03+D11, CL75_G06+C01+C02, CL78_G04+F08+F01, CL78_G04+B03+H11, CL77_G05+A11+F03 (top 5 of 884736 values)
count int

count

HISTOGRAM FOR count [1, 15]
n
468,680,448
mean
1.21
sd
0.518

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 468680448
chr1 40609748
chr1_KI270706v1_random 4048
chr1_KI270707v1_random 693
chr1_KI270708v1_random 1634
chr1_KI270709v1_random 4144
chr1_KI270710v1_random 611
chr1_KI270711v1_random 1164
chr1_KI270712v1_random 1498
chr1_KI270713v1_random 6902
chr1_KI270714v1_random 909
chr2 36672558
chr2_KI270715v1_random 141
chr2_KI270716v1_random 524
chr3 31085795
chr3_GL000221v1_random 653
chr4 26335314
chr4_GL000008v2_random 5212
chr5 27017820
chr5_GL000208v1_random 2834
chr6 27017072
chr7 24292842
chr8 21716403
chr9 18538822
chr9_KI270717v1_random 216
chr9_KI270718v1_random 284
chr9_KI270719v1_random 3914
chr9_KI270720v1_random 1621
chr10 22167111
chr11 23212890
chr11_KI270721v1_random 984
chr12 22625490
chr13 13334642
chr14 14174140
chr14_GL000009v2_random 3735
chr14_GL000194v1_random 4126
chr14_GL000225v1_random 23781
chr14_KI270722v1_random 2436
chr14_KI270723v1_random 1154
chr14_KI270724v1_random 1143
chr14_KI270725v1_random 2986
chr14_KI270726v1_random 1904
chr15 13803727
chr15_KI270727v1_random 681
chr16 13864408
chr16_KI270728v1_random 9042
chr17 17418356
chr17_GL000205v2_random 25484
chr17_KI270729v1_random 9596
chr17_KI270730v1_random 2219
chr18 11064549
chr19 15008791
chr20 10654578
chr21 4980396
chr22 7509396
chr22_KI270731v1_random 675
chr22_KI270732v1_random 1935
chr22_KI270733v1_random 60640
chr22_KI270734v1_random 1020
chr22_KI270735v1_random 2874
chr22_KI270736v1_random 3904
chr22_KI270737v1_random 914
chr22_KI270738v1_random 2787
chr22_KI270739v1_random 141
chrM 14492751
chrUn_GL000195v1 27299
chrUn_GL000213v1 248
chrUn_GL000214v1 2465
chrUn_GL000216v2 8197
chrUn_GL000218v1 3708
chrUn_GL000219v1 23016
chrUn_GL000220v1 7140
chrUn_GL000224v1 7182
chrUn_GL000226v1 12
chrUn_KI270302v1 16
chrUn_KI270303v1 13
chrUn_KI270304v1 7
chrUn_KI270305v1 22
chrUn_KI270310v1 28
chrUn_KI270311v1 29
chrUn_KI270315v1 12
chrUn_KI270316v1 3
chrUn_KI270317v1 3
chrUn_KI270320v1 61
chrUn_KI270322v1 51
chrUn_KI270329v1 2
chrUn_KI270330v1 255
chrUn_KI270333v1 183
chrUn_KI270335v1 1
chrUn_KI270336v1 95
chrUn_KI270337v1 193
chrUn_KI270362v1 37
chrUn_KI270363v1 22
chrUn_KI270366v1 18
chrUn_KI270374v1 4
chrUn_KI270378v1 3
chrUn_KI270382v1 5
chrUn_KI270383v1 2
chrUn_KI270385v1 1
chrUn_KI270388v1 1
chrUn_KI270389v1 3
chrUn_KI270390v1 1
chrUn_KI270393v1 5
chrUn_KI270396v1 2
chrUn_KI270411v1 14
chrUn_KI270412v1 9
chrUn_KI270414v1 13
chrUn_KI270417v1 49
chrUn_KI270418v1 38
chrUn_KI270419v1 22
chrUn_KI270420v1 38
chrUn_KI270422v1 12
chrUn_KI270423v1 9
chrUn_KI270424v1 11
chrUn_KI270425v1 10
chrUn_KI270429v1 89
chrUn_KI270435v1 2921
chrUn_KI270438v1 28653
chrUn_KI270442v1 22569
chrUn_KI270448v1 438
chrUn_KI270465v1 134
chrUn_KI270466v1 3148
chrUn_KI270467v1 10542
chrUn_KI270468v1 190
chrUn_KI270507v1 417
chrUn_KI270508v1 174
chrUn_KI270509v1 189
chrUn_KI270510v1 125
chrUn_KI270511v1 333
chrUn_KI270512v1 622
chrUn_KI270515v1 542
chrUn_KI270516v1 85
chrUn_KI270517v1 271
chrUn_KI270518v1 175
chrUn_KI270519v1 5036
chrUn_KI270521v1 163
chrUn_KI270522v1 102
chrUn_KI270528v1 1
chrUn_KI270529v1 9
chrUn_KI270530v1 15
chrUn_KI270538v1 3584
chrUn_KI270539v1 22
chrUn_KI270544v1 15
chrUn_KI270579v1 14
chrUn_KI270580v1 156
chrUn_KI270581v1 8
chrUn_KI270582v1 34
chrUn_KI270583v1 132
chrUn_KI270584v1 371
chrUn_KI270587v1 832
chrUn_KI270588v1 332
chrUn_KI270589v1 406
chrUn_KI270590v1 316
chrUn_KI270591v1 502
chrUn_KI270593v1 138
chrUn_KI270741v1 146
chrUn_KI270742v1 2641
chrUn_KI270743v1 2143
chrUn_KI270744v1 5741
chrUn_KI270745v1 77
chrUn_KI270746v1 3728
chrUn_KI270747v1 351
chrUn_KI270748v1 84
chrUn_KI270749v1 3011
chrUn_KI270750v1 4962
chrUn_KI270751v1 4921
chrUn_KI270753v1 458
chrUn_KI270754v1 780
chrUn_KI270755v1 315
chrUn_KI270756v1 1210
chrUn_KI270757v1 1889
chrX 10066747
chrY 617643
chrY_KI270740v1_random 464

Fragment lengths

fragments min max mean median
fragments 468680448 7 1992 240.56 184
global fragment-length histogram

Files

Filename Size md5
T032_b11_Heart_PCW12.fragments.tsv.gz 4.19 GB abc5352d612c1efb73f8004e8a979385
T032_b11_Heart_PCW12.fragments.tsv.gz.tbi 1.57 MB 2bbac5a9b4f63a746a85330917b370f1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB c55f733796d3ff07d1aeaa360e909dee
statistics/