Resource

Id summary/liu2026Multiomics/atac_fragments/T104_b11_Heart_PCW17content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T104_b11_Heart_PCW17 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 11
  • modalities: ATAC
  • organ: Heart
  • pcw_age: 17
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T104_b11_Heart_PCW17
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T104
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL76_B03+A06+A08, CL73_B01+C01+A09, CL78_B07+F03+E08, CL80_B07+H03+A04, CL74_B10+D05+D03 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 20]
n
329,544,757
mean
1.21
sd
0.526

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 329544757
chr1 29821818
chr1_KI270706v1_random 823
chr1_KI270707v1_random 149
chr1_KI270708v1_random 365
chr1_KI270709v1_random 1599
chr1_KI270710v1_random 156
chr1_KI270711v1_random 792
chr1_KI270712v1_random 960
chr1_KI270713v1_random 7507
chr1_KI270714v1_random 1974
chr2 25460324
chr2_KI270715v1_random 50
chr2_KI270716v1_random 214
chr3 21421422
chr3_GL000221v1_random 312
chr4 16803248
chr4_GL000008v2_random 2366
chr5 18239901
chr5_GL000208v1_random 1096
chr6 18639255
chr7 16423876
chr8 14471614
chr9 13227825
chr9_KI270717v1_random 226
chr9_KI270718v1_random 157
chr9_KI270719v1_random 1221
chr9_KI270720v1_random 632
chr10 15516175
chr11 16556641
chr11_KI270721v1_random 944
chr12 15677699
chr13 8716178
chr14 9972550
chr14_GL000009v2_random 1551
chr14_GL000194v1_random 2115
chr14_GL000225v1_random 7870
chr14_KI270722v1_random 1418
chr14_KI270723v1_random 618
chr14_KI270724v1_random 336
chr14_KI270725v1_random 877
chr14_KI270726v1_random 68
chr15 10252294
chr15_KI270727v1_random 721
chr16 10218667
chr16_KI270728v1_random 805
chr17 13757671
chr17_GL000205v2_random 22897
chr17_KI270729v1_random 3796
chr17_KI270730v1_random 932
chr18 7261396
chr19 12595188
chr20 7739732
chr21 3331919
chr22 5951816
chr22_KI270731v1_random 458
chr22_KI270732v1_random 913
chr22_KI270733v1_random 34389
chr22_KI270734v1_random 395
chr22_KI270735v1_random 1178
chr22_KI270736v1_random 2841
chr22_KI270737v1_random 423
chr22_KI270738v1_random 1167
chr22_KI270739v1_random 25
chrM 9865431
chrUn_GL000195v1 27200
chrUn_GL000213v1 170
chrUn_GL000214v1 648
chrUn_GL000216v2 2391
chrUn_GL000218v1 1962
chrUn_GL000219v1 16278
chrUn_GL000220v1 4928
chrUn_GL000224v1 3174
chrUn_GL000226v1 8
chrUn_KI270302v1 8
chrUn_KI270303v1 4
chrUn_KI270304v1 7
chrUn_KI270305v1 4
chrUn_KI270310v1 5
chrUn_KI270311v1 10
chrUn_KI270312v1 1
chrUn_KI270316v1 2
chrUn_KI270317v1 3
chrUn_KI270320v1 29
chrUn_KI270322v1 29
chrUn_KI270330v1 109
chrUn_KI270333v1 61
chrUn_KI270336v1 51
chrUn_KI270337v1 85
chrUn_KI270362v1 17
chrUn_KI270363v1 12
chrUn_KI270366v1 8
chrUn_KI270378v1 1
chrUn_KI270382v1 7
chrUn_KI270383v1 1
chrUn_KI270384v1 1
chrUn_KI270385v1 2
chrUn_KI270386v1 1
chrUn_KI270388v1 1
chrUn_KI270390v1 1
chrUn_KI270392v1 1
chrUn_KI270393v1 1
chrUn_KI270395v1 2
chrUn_KI270396v1 1
chrUn_KI270411v1 10
chrUn_KI270412v1 1
chrUn_KI270417v1 36
chrUn_KI270418v1 3
chrUn_KI270419v1 3
chrUn_KI270420v1 22
chrUn_KI270422v1 15
chrUn_KI270423v1 8
chrUn_KI270424v1 4
chrUn_KI270425v1 1
chrUn_KI270429v1 49
chrUn_KI270435v1 1217
chrUn_KI270438v1 11891
chrUn_KI270442v1 8460
chrUn_KI270448v1 165
chrUn_KI270465v1 49
chrUn_KI270466v1 628
chrUn_KI270467v1 2508
chrUn_KI270468v1 86
chrUn_KI270507v1 150
chrUn_KI270508v1 71
chrUn_KI270509v1 76
chrUn_KI270510v1 65
chrUn_KI270511v1 120
chrUn_KI270512v1 258
chrUn_KI270515v1 174
chrUn_KI270516v1 51
chrUn_KI270517v1 96
chrUn_KI270518v1 50
chrUn_KI270519v1 1760
chrUn_KI270521v1 73
chrUn_KI270522v1 39
chrUn_KI270529v1 3
chrUn_KI270530v1 3
chrUn_KI270538v1 1454
chrUn_KI270539v1 11
chrUn_KI270544v1 4
chrUn_KI270579v1 6
chrUn_KI270580v1 53
chrUn_KI270581v1 2
chrUn_KI270582v1 14
chrUn_KI270583v1 48
chrUn_KI270584v1 148
chrUn_KI270587v1 225
chrUn_KI270588v1 125
chrUn_KI270589v1 193
chrUn_KI270590v1 151
chrUn_KI270591v1 196
chrUn_KI270593v1 56
chrUn_KI270741v1 41
chrUn_KI270742v1 1256
chrUn_KI270743v1 706
chrUn_KI270744v1 2787
chrUn_KI270745v1 86
chrUn_KI270746v1 1360
chrUn_KI270747v1 184
chrUn_KI270748v1 78
chrUn_KI270749v1 1369
chrUn_KI270750v1 1745
chrUn_KI270751v1 1819
chrUn_KI270753v1 140
chrUn_KI270754v1 384
chrUn_KI270755v1 199
chrUn_KI270756v1 535
chrUn_KI270757v1 697
chrX 7327349
chrY 85939
chrY_KI270740v1_random 52

Fragment lengths

fragments min max mean median
fragments 329544757 7 1992 223.95 166
global fragment-length histogram

Files

Filename Size md5
T104_b11_Heart_PCW17.fragments.tsv.gz 2.9 GB 4647aa00ba80d79a7469f716bb94ed72
T104_b11_Heart_PCW17.fragments.tsv.gz.tbi 1.27 MB ec33e936f35e3204668932ec3c29de3e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 5e9ddb7580a8a3a53803c2aa61eca923
statistics/