Resource

Id summary/liu2026Multiomics/atac_fragments/T11_b19_Skin_PCW19content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T11_b19_Skin_PCW19 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 19
  • modalities: ATAC
  • organ: Skin
  • pcw_age: 19
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T11_b19_Skin_PCW19
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T11
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL147_B10+D09+C02, CL143_A07+C09+D12, CL146_C10+F03+C12, CL142_B08+D04+G02, CL143_B08+D04+F07 (top 5 of 1327102 values)
count int

count
HISTOGRAM FOR count [1, 21]
n
476,015,906
mean
1.26
sd
0.573

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 476015906
chr1 40892934
chr1_KI270706v1_random 5760
chr1_KI270707v1_random 1187
chr1_KI270708v1_random 828
chr1_KI270709v1_random 6195
chr1_KI270710v1_random 420
chr1_KI270711v1_random 2246
chr1_KI270712v1_random 2546
chr1_KI270713v1_random 14829
chr1_KI270714v1_random 4311
chr2 38786464
chr2_KI270715v1_random 342
chr2_KI270716v1_random 686
chr3 32296472
chr3_GL000221v1_random 1118
chr4 27025549
chr4_GL000008v2_random 9776
chr5 28008877
chr5_GL000208v1_random 3592
chr6 27801786
chr7 25346654
chr8 22590938
chr9 19743265
chr9_KI270717v1_random 295
chr9_KI270718v1_random 525
chr9_KI270719v1_random 5616
chr9_KI270720v1_random 2571
chr10 22211151
chr11 23824890
chr11_KI270721v1_random 966
chr12 23039577
chr13 13837823
chr14 15084538
chr14_GL000009v2_random 7990
chr14_GL000194v1_random 8060
chr14_GL000225v1_random 22617
chr14_KI270722v1_random 8854
chr14_KI270723v1_random 2900
chr14_KI270724v1_random 1438
chr14_KI270725v1_random 3011
chr14_KI270726v1_random 361
chr15 13234617
chr15_KI270727v1_random 886
chr16 14773951
chr16_KI270728v1_random 6277
chr17 17102752
chr17_GL000205v2_random 41046
chr17_KI270729v1_random 14255
chr17_KI270730v1_random 3129
chr18 11158832
chr19 15914914
chr20 10879934
chr21 5390681
chr22 7280091
chr22_KI270731v1_random 510
chr22_KI270732v1_random 3374
chr22_KI270733v1_random 53148
chr22_KI270734v1_random 905
chr22_KI270735v1_random 4690
chr22_KI270736v1_random 10210
chr22_KI270737v1_random 1278
chr22_KI270738v1_random 3535
chr22_KI270739v1_random 219
chrM 2681976
chrUn_GL000195v1 27023
chrUn_GL000213v1 282
chrUn_GL000214v1 2728
chrUn_GL000216v2 8259
chrUn_GL000218v1 11058
chrUn_GL000219v1 20216
chrUn_GL000220v1 8047
chrUn_GL000224v1 13801
chrUn_GL000226v1 24
chrUn_KI270302v1 23
chrUn_KI270303v1 21
chrUn_KI270304v1 11
chrUn_KI270305v1 20
chrUn_KI270310v1 41
chrUn_KI270311v1 34
chrUn_KI270312v1 2
chrUn_KI270315v1 13
chrUn_KI270316v1 6
chrUn_KI270317v1 6
chrUn_KI270320v1 127
chrUn_KI270322v1 102
chrUn_KI270329v1 2
chrUn_KI270330v1 440
chrUn_KI270333v1 221
chrUn_KI270336v1 128
chrUn_KI270337v1 290
chrUn_KI270362v1 34
chrUn_KI270363v1 42
chrUn_KI270364v1 3
chrUn_KI270366v1 46
chrUn_KI270378v1 4
chrUn_KI270382v1 25
chrUn_KI270384v1 9
chrUn_KI270385v1 6
chrUn_KI270386v1 5
chrUn_KI270387v1 2
chrUn_KI270389v1 5
chrUn_KI270391v1 2
chrUn_KI270392v1 12
chrUn_KI270393v1 7
chrUn_KI270394v1 2
chrUn_KI270395v1 2
chrUn_KI270396v1 1
chrUn_KI270411v1 10
chrUn_KI270412v1 13
chrUn_KI270414v1 18
chrUn_KI270417v1 183
chrUn_KI270418v1 48
chrUn_KI270419v1 12
chrUn_KI270420v1 50
chrUn_KI270422v1 65
chrUn_KI270423v1 13
chrUn_KI270424v1 8
chrUn_KI270425v1 9
chrUn_KI270429v1 293
chrUn_KI270435v1 4627
chrUn_KI270438v1 44830
chrUn_KI270442v1 31363
chrUn_KI270448v1 580
chrUn_KI270465v1 127
chrUn_KI270466v1 3237
chrUn_KI270467v1 9598
chrUn_KI270468v1 326
chrUn_KI270507v1 651
chrUn_KI270508v1 292
chrUn_KI270509v1 244
chrUn_KI270510v1 197
chrUn_KI270511v1 570
chrUn_KI270512v1 804
chrUn_KI270515v1 792
chrUn_KI270516v1 145
chrUn_KI270517v1 385
chrUn_KI270518v1 198
chrUn_KI270519v1 6829
chrUn_KI270521v1 290
chrUn_KI270522v1 115
chrUn_KI270528v1 4
chrUn_KI270529v1 16
chrUn_KI270530v1 12
chrUn_KI270538v1 5435
chrUn_KI270539v1 65
chrUn_KI270544v1 13
chrUn_KI270579v1 33
chrUn_KI270580v1 175
chrUn_KI270581v1 8
chrUn_KI270582v1 63
chrUn_KI270583v1 186
chrUn_KI270584v1 529
chrUn_KI270587v1 25
chrUn_KI270588v1 704
chrUn_KI270589v1 788
chrUn_KI270590v1 545
chrUn_KI270591v1 894
chrUn_KI270593v1 206
chrUn_KI270741v1 251
chrUn_KI270742v1 5529
chrUn_KI270743v1 6141
chrUn_KI270744v1 11151
chrUn_KI270745v1 518
chrUn_KI270746v1 6739
chrUn_KI270747v1 663
chrUn_KI270748v1 88
chrUn_KI270749v1 3914
chrUn_KI270750v1 6515
chrUn_KI270751v1 8671
chrUn_KI270753v1 714
chrUn_KI270754v1 1886
chrUn_KI270755v1 556
chrUn_KI270756v1 1498
chrUn_KI270757v1 2823
chrX 16494350
chrY 82923
chrY_KI270740v1_random 53

Fragment lengths

fragments min max mean median
fragments 476015906 7 1992 245.03 185
global fragment-length histogram

Files

Filename Size md5
T11_b19_Skin_PCW19.fragments.tsv.gz 4.5 GB 928dafa1d6b634d6a58f591f3ea6c44c
T11_b19_Skin_PCW19.fragments.tsv.gz.tbi 1.53 MB 98a5ac2ddef059cb2e8f56b5d8aefbf1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB 1253dcb1478e22ac461a05a3acaf3d20
statistics/