Resource

Id summary/liu2026Multiomics/atac_fragments/T132_b12_Lung_PCW21content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T132_b12_Lung_PCW21 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 12
  • modalities: ATAC
  • organ: Lung
  • pcw_age: 21
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T132_b12_Lung_PCW21
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T132
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL83_B10+A06+C10, CL81_B01+F08+A11, CL88_B03+C04+E05, CL86_B10+F10+F10, CL81_B10+B08+A12 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 13]
n
484,582,485
mean
1.21
sd
0.52

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 484582485
chr1 44411098
chr1_KI270706v1_random 2972
chr1_KI270707v1_random 323
chr1_KI270708v1_random 1521
chr1_KI270709v1_random 1912
chr1_KI270710v1_random 420
chr1_KI270711v1_random 874
chr1_KI270712v1_random 1817
chr1_KI270713v1_random 14779
chr1_KI270714v1_random 1288
chr2 36775948
chr2_KI270715v1_random 55
chr2_KI270716v1_random 209
chr3 30025175
chr3_GL000221v1_random 465
chr4 22099454
chr4_GL000008v2_random 3253
chr5 24465273
chr5_GL000208v1_random 1141
chr6 26825064
chr7 24150817
chr8 20205502
chr9 20822276
chr9_KI270717v1_random 320
chr9_KI270718v1_random 322
chr9_KI270719v1_random 2176
chr9_KI270720v1_random 929
chr10 22042533
chr11 25772413
chr11_KI270721v1_random 2077
chr12 22897015
chr13 11799068
chr14 15700252
chr14_GL000009v2_random 3261
chr14_GL000194v1_random 5809
chr14_GL000225v1_random 7685
chr14_KI270722v1_random 4578
chr14_KI270723v1_random 851
chr14_KI270724v1_random 1129
chr14_KI270725v1_random 1610
chr14_KI270726v1_random 569
chr15 14462624
chr15_KI270727v1_random 1318
chr16 18082745
chr16_KI270728v1_random 937
chr17 24188310
chr17_GL000205v2_random 34738
chr17_KI270729v1_random 3625
chr17_KI270730v1_random 948
chr18 10033658
chr19 24564244
chr20 12227808
chr21 5619834
chr22 10208465
chr22_KI270731v1_random 724
chr22_KI270732v1_random 1190
chr22_KI270733v1_random 122648
chr22_KI270734v1_random 1834
chr22_KI270735v1_random 1499
chr22_KI270736v1_random 3622
chr22_KI270737v1_random 471
chr22_KI270738v1_random 1367
chr22_KI270739v1_random 49
chrM 5106989
chrUn_GL000195v1 33564
chrUn_GL000213v1 113
chrUn_GL000214v1 1727
chrUn_GL000216v2 5053
chrUn_GL000218v1 3120
chrUn_GL000219v1 25250
chrUn_GL000220v1 12504
chrUn_GL000224v1 4488
chrUn_GL000226v1 11
chrUn_KI270302v1 19
chrUn_KI270303v1 6
chrUn_KI270304v1 3
chrUn_KI270305v1 3
chrUn_KI270310v1 29
chrUn_KI270311v1 19
chrUn_KI270312v1 2
chrUn_KI270315v1 2
chrUn_KI270317v1 6
chrUn_KI270320v1 28
chrUn_KI270322v1 13
chrUn_KI270330v1 136
chrUn_KI270333v1 59
chrUn_KI270336v1 34
chrUn_KI270337v1 91
chrUn_KI270362v1 12
chrUn_KI270363v1 21
chrUn_KI270364v1 1
chrUn_KI270366v1 9
chrUn_KI270378v1 3
chrUn_KI270382v1 10
chrUn_KI270384v1 2
chrUn_KI270385v1 1
chrUn_KI270390v1 1
chrUn_KI270392v1 5
chrUn_KI270393v1 2
chrUn_KI270394v1 1
chrUn_KI270395v1 3
chrUn_KI270396v1 2
chrUn_KI270411v1 10
chrUn_KI270412v1 4
chrUn_KI270414v1 2
chrUn_KI270417v1 23
chrUn_KI270418v1 13
chrUn_KI270419v1 5
chrUn_KI270420v1 23
chrUn_KI270422v1 18
chrUn_KI270423v1 6
chrUn_KI270424v1 6
chrUn_KI270425v1 4
chrUn_KI270429v1 26
chrUn_KI270435v1 1396
chrUn_KI270438v1 12282
chrUn_KI270442v1 10707
chrUn_KI270448v1 173
chrUn_KI270465v1 15
chrUn_KI270466v1 1936
chrUn_KI270467v1 6030
chrUn_KI270468v1 110
chrUn_KI270507v1 207
chrUn_KI270508v1 108
chrUn_KI270509v1 69
chrUn_KI270510v1 47
chrUn_KI270511v1 116
chrUn_KI270512v1 245
chrUn_KI270515v1 211
chrUn_KI270516v1 38
chrUn_KI270517v1 123
chrUn_KI270518v1 68
chrUn_KI270519v1 2131
chrUn_KI270521v1 95
chrUn_KI270522v1 45
chrUn_KI270529v1 3
chrUn_KI270530v1 3
chrUn_KI270538v1 1638
chrUn_KI270539v1 36
chrUn_KI270544v1 7
chrUn_KI270579v1 3
chrUn_KI270580v1 79
chrUn_KI270582v1 17
chrUn_KI270583v1 80
chrUn_KI270584v1 201
chrUn_KI270587v1 127
chrUn_KI270588v1 143
chrUn_KI270589v1 243
chrUn_KI270590v1 164
chrUn_KI270591v1 280
chrUn_KI270593v1 67
chrUn_KI270741v1 96
chrUn_KI270742v1 1889
chrUn_KI270743v1 1898
chrUn_KI270744v1 3257
chrUn_KI270745v1 85
chrUn_KI270746v1 2185
chrUn_KI270747v1 200
chrUn_KI270748v1 139
chrUn_KI270749v1 1638
chrUn_KI270750v1 2634
chrUn_KI270751v1 2624
chrUn_KI270753v1 189
chrUn_KI270754v1 236
chrUn_KI270755v1 165
chrUn_KI270756v1 586
chrUn_KI270757v1 822
chrX 11666856
chrY 47351
chrY_KI270740v1_random 19

Fragment lengths

fragments min max mean median
fragments 484582485 7 1992 224.65 170
global fragment-length histogram

Files

Filename Size md5
T132_b12_Lung_PCW21.fragments.tsv.gz 4.13 GB 981531c58fefe5a8dcb962f5678dbf29
T132_b12_Lung_PCW21.fragments.tsv.gz.tbi 1.55 MB 843dbdcdb94ae83929751718b1cc5511
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 1c21b55de0374a7dabbbee3fb784e406
statistics/