Resource

Id summary/liu2026Multiomics/atac_fragments/T155_b4_Brain_PCW10content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T155_b4_Brain_PCW10 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 4
  • modalities: ATAC
  • organ: Brain
  • pcw_age: 10
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T155_b4_Brain_PCW10
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T155
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell

HISTOGRAM FOR cell CL27_B07+H01+D01, CL29_B04+H03+A08, CL25_B02+D10+A03, CL27_B11+B10+D10, CL27_B06+C09+H01 (top 5 of 884733 values)
count int

count

HISTOGRAM FOR count [1, 34]
n
136,842,077
mean
1.83
sd
1.63

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 136842077
chr1 12230558
chr1_KI270706v1_random 969
chr1_KI270707v1_random 180
chr1_KI270708v1_random 135
chr1_KI270709v1_random 875
chr1_KI270710v1_random 58
chr1_KI270711v1_random 880
chr1_KI270712v1_random 779
chr1_KI270713v1_random 3901
chr1_KI270714v1_random 1556
chr2 10773704
chr2_KI270715v1_random 27
chr2_KI270716v1_random 132
chr3 8683996
chr3_GL000221v1_random 225
chr4 6864534
chr4_GL000008v2_random 1731
chr5 7491713
chr5_GL000208v1_random 565
chr6 7541067
chr7 7103109
chr8 6102835
chr9 5787407
chr9_KI270717v1_random 14
chr9_KI270718v1_random 112
chr9_KI270719v1_random 813
chr9_KI270720v1_random 385
chr10 6333449
chr11 7043508
chr11_KI270721v1_random 413
chr12 6532954
chr13 3608559
chr14 4352720
chr14_GL000009v2_random 957
chr14_GL000194v1_random 1921
chr14_GL000225v1_random 3423
chr14_KI270722v1_random 814
chr14_KI270723v1_random 437
chr14_KI270724v1_random 197
chr14_KI270725v1_random 499
chr14_KI270726v1_random 187
chr15 4000193
chr15_KI270727v1_random 202
chr16 4767740
chr16_KI270728v1_random 1458
chr17 5901958
chr17_GL000205v2_random 11139
chr17_KI270729v1_random 2287
chr17_KI270730v1_random 548
chr18 2991020
chr19 5892173
chr20 3477634
chr21 1583617
chr22 2682387
chr22_KI270731v1_random 92
chr22_KI270732v1_random 671
chr22_KI270733v1_random 11253
chr22_KI270734v1_random 379
chr22_KI270735v1_random 717
chr22_KI270736v1_random 1928
chr22_KI270737v1_random 217
chr22_KI270738v1_random 506
chr22_KI270739v1_random 11
chrM 1848307
chrUn_GL000195v1 7675
chrUn_GL000213v1 53
chrUn_GL000214v1 442
chrUn_GL000216v2 1215
chrUn_GL000218v1 1845
chrUn_GL000219v1 3508
chrUn_GL000220v1 1797
chrUn_GL000224v1 2862
chrUn_GL000226v1 1
chrUn_KI270302v1 7
chrUn_KI270303v1 2
chrUn_KI270304v1 2
chrUn_KI270305v1 2
chrUn_KI270310v1 8
chrUn_KI270311v1 7
chrUn_KI270315v1 1
chrUn_KI270316v1 1
chrUn_KI270317v1 2
chrUn_KI270320v1 21
chrUn_KI270322v1 16
chrUn_KI270330v1 144
chrUn_KI270333v1 82
chrUn_KI270336v1 31
chrUn_KI270337v1 94
chrUn_KI270362v1 7
chrUn_KI270363v1 5
chrUn_KI270366v1 6
chrUn_KI270382v1 1
chrUn_KI270386v1 1
chrUn_KI270388v1 2
chrUn_KI270390v1 1
chrUn_KI270394v1 1
chrUn_KI270395v1 1
chrUn_KI270411v1 3
chrUn_KI270412v1 3
chrUn_KI270414v1 2
chrUn_KI270417v1 6
chrUn_KI270418v1 5
chrUn_KI270420v1 6
chrUn_KI270422v1 4
chrUn_KI270424v1 1
chrUn_KI270429v1 37
chrUn_KI270435v1 635
chrUn_KI270438v1 8312
chrUn_KI270442v1 5065
chrUn_KI270448v1 102
chrUn_KI270465v1 7
chrUn_KI270466v1 571
chrUn_KI270467v1 1628
chrUn_KI270468v1 53
chrUn_KI270507v1 80
chrUn_KI270508v1 42
chrUn_KI270509v1 34
chrUn_KI270510v1 23
chrUn_KI270511v1 67
chrUn_KI270512v1 104
chrUn_KI270515v1 108
chrUn_KI270516v1 14
chrUn_KI270517v1 48
chrUn_KI270518v1 29
chrUn_KI270519v1 1134
chrUn_KI270521v1 51
chrUn_KI270522v1 25
chrUn_KI270528v1 1
chrUn_KI270530v1 2
chrUn_KI270538v1 716
chrUn_KI270539v1 3
chrUn_KI270579v1 4
chrUn_KI270580v1 36
chrUn_KI270582v1 8
chrUn_KI270583v1 41
chrUn_KI270584v1 68
chrUn_KI270587v1 14
chrUn_KI270588v1 72
chrUn_KI270589v1 99
chrUn_KI270590v1 86
chrUn_KI270591v1 118
chrUn_KI270593v1 25
chrUn_KI270741v1 38
chrUn_KI270742v1 770
chrUn_KI270743v1 1170
chrUn_KI270744v1 1756
chrUn_KI270745v1 87
chrUn_KI270746v1 782
chrUn_KI270747v1 77
chrUn_KI270748v1 136
chrUn_KI270749v1 822
chrUn_KI270750v1 942
chrUn_KI270751v1 1118
chrUn_KI270753v1 93
chrUn_KI270754v1 220
chrUn_KI270755v1 138
chrUn_KI270756v1 304
chrUn_KI270757v1 312
chrX 2987240
chrY 157915
chrY_KI270740v1_random 87

Fragment lengths

fragments min max mean median
fragments 136842077 7 1992 259.24 193
global fragment-length histogram

Files

Filename Size md5
T155_b4_Brain_PCW10.fragments.tsv.gz 1.25 GB e894f1f3aeab6b70b9a832e16d82c97c
T155_b4_Brain_PCW10.fragments.tsv.gz.tbi 862.89 KB 32a8353662c180e203cd4956b4e4f390
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB d8a189f2aaf6a3e09df7c08672d82382
statistics/