Resource

Id summary/liu2026Multiomics/atac_fragments/T161_b9_Muscle_PCW10content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T161_b9_Muscle_PCW10 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 9
  • modalities: ATAC
  • organ: Muscle
  • pcw_age: 10
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T161_b9_Muscle_PCW10
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T161
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL57_A05+F12+C06, CL59_A02+C06+A01, CL62_A12+B09+D05, CL62_A04+A08+E12, CL63_A10+F07+B05 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 72]
n
378,984,289
mean
1.23
sd
0.553

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 378984289
chr1 31806556
chr1_KI270706v1_random 5412
chr1_KI270707v1_random 1125
chr1_KI270708v1_random 435
chr1_KI270709v1_random 6709
chr1_KI270710v1_random 393
chr1_KI270711v1_random 2663
chr1_KI270712v1_random 2433
chr1_KI270713v1_random 6124
chr1_KI270714v1_random 2952
chr2 31737054
chr2_KI270715v1_random 294
chr2_KI270716v1_random 1146
chr3 26543114
chr3_GL000221v1_random 1327
chr4 23979583
chr4_GL000008v2_random 9121
chr5 23020531
chr5_GL000208v1_random 4616
chr6 22847636
chr7 20922578
chr8 18681213
chr9 15122128
chr9_KI270717v1_random 45
chr9_KI270718v1_random 463
chr9_KI270719v1_random 5445
chr9_KI270720v1_random 2689
chr10 17214947
chr11 18781985
chr11_KI270721v1_random 910
chr12 18327337
chr13 11834271
chr14 11954402
chr14_GL000009v2_random 5640
chr14_GL000194v1_random 6779
chr14_GL000225v1_random 12815
chr14_KI270722v1_random 5134
chr14_KI270723v1_random 1873
chr14_KI270724v1_random 806
chr14_KI270725v1_random 3981
chr14_KI270726v1_random 1325
chr15 9789941
chr15_KI270727v1_random 1226
chr16 10565760
chr16_KI270728v1_random 7262
chr17 11738470
chr17_GL000205v2_random 28693
chr17_KI270729v1_random 15115
chr17_KI270730v1_random 3014
chr18 9399994
chr19 10101042
chr20 8000711
chr21 4289135
chr22 4973404
chr22_KI270731v1_random 177
chr22_KI270732v1_random 5114
chr22_KI270733v1_random 23649
chr22_KI270734v1_random 867
chr22_KI270735v1_random 5366
chr22_KI270736v1_random 8117
chr22_KI270737v1_random 1520
chr22_KI270738v1_random 4796
chr22_KI270739v1_random 110
chrM 5895693
chrUn_GL000195v1 13880
chrUn_GL000213v1 420
chrUn_GL000214v1 1526
chrUn_GL000216v2 4580
chrUn_GL000218v1 9330
chrUn_GL000219v1 11300
chrUn_GL000220v1 3916
chrUn_GL000224v1 12231
chrUn_GL000226v1 9
chrUn_KI270302v1 20
chrUn_KI270303v1 16
chrUn_KI270304v1 13
chrUn_KI270305v1 16
chrUn_KI270310v1 31
chrUn_KI270311v1 93
chrUn_KI270312v1 2
chrUn_KI270315v1 10
chrUn_KI270316v1 6
chrUn_KI270317v1 13
chrUn_KI270320v1 138
chrUn_KI270322v1 123
chrUn_KI270329v1 3
chrUn_KI270330v1 604
chrUn_KI270333v1 573
chrUn_KI270336v1 318
chrUn_KI270337v1 734
chrUn_KI270362v1 79
chrUn_KI270363v1 41
chrUn_KI270366v1 43
chrUn_KI270371v1 2
chrUn_KI270381v1 1
chrUn_KI270382v1 20
chrUn_KI270383v1 3
chrUn_KI270384v1 4
chrUn_KI270385v1 8
chrUn_KI270386v1 10
chrUn_KI270388v1 2
chrUn_KI270389v1 2
chrUn_KI270390v1 6
chrUn_KI270391v1 1
chrUn_KI270392v1 5
chrUn_KI270393v1 23
chrUn_KI270394v1 3
chrUn_KI270395v1 16
chrUn_KI270396v1 4
chrUn_KI270411v1 10
chrUn_KI270412v1 7
chrUn_KI270414v1 4
chrUn_KI270417v1 161
chrUn_KI270418v1 28
chrUn_KI270419v1 8
chrUn_KI270420v1 75
chrUn_KI270422v1 57
chrUn_KI270423v1 11
chrUn_KI270424v1 3
chrUn_KI270425v1 4
chrUn_KI270429v1 291
chrUn_KI270435v1 5381
chrUn_KI270438v1 44033
chrUn_KI270442v1 32118
chrUn_KI270448v1 775
chrUn_KI270465v1 92
chrUn_KI270466v1 5230
chrUn_KI270467v1 14963
chrUn_KI270468v1 475
chrUn_KI270507v1 765
chrUn_KI270508v1 283
chrUn_KI270509v1 352
chrUn_KI270510v1 216
chrUn_KI270511v1 705
chrUn_KI270512v1 1015
chrUn_KI270515v1 1013
chrUn_KI270516v1 178
chrUn_KI270517v1 495
chrUn_KI270518v1 287
chrUn_KI270519v1 11556
chrUn_KI270521v1 321
chrUn_KI270522v1 190
chrUn_KI270528v1 2
chrUn_KI270529v1 17
chrUn_KI270530v1 11
chrUn_KI270538v1 5841
chrUn_KI270539v1 23
chrUn_KI270544v1 9
chrUn_KI270579v1 29
chrUn_KI270580v1 211
chrUn_KI270581v1 5
chrUn_KI270582v1 64
chrUn_KI270583v1 270
chrUn_KI270584v1 753
chrUn_KI270587v1 80
chrUn_KI270588v1 649
chrUn_KI270589v1 642
chrUn_KI270590v1 550
chrUn_KI270591v1 709
chrUn_KI270593v1 237
chrUn_KI270741v1 172
chrUn_KI270742v1 3927
chrUn_KI270743v1 6460
chrUn_KI270744v1 7299
chrUn_KI270745v1 245
chrUn_KI270746v1 6429
chrUn_KI270747v1 576
chrUn_KI270748v1 324
chrUn_KI270749v1 5985
chrUn_KI270750v1 7590
chrUn_KI270751v1 8731
chrUn_KI270753v1 455
chrUn_KI270754v1 797
chrUn_KI270755v1 386
chrUn_KI270756v1 1849
chrUn_KI270757v1 3259
chrX 10260972
chrY 751781
chrY_KI270740v1_random 504

Fragment lengths

fragments min max mean median
fragments 378984289 7 1992 281.98 231
global fragment-length histogram

Files

Filename Size md5
T161_b9_Muscle_PCW10.fragments.tsv.gz 3.57 GB b832cba2569adf0cff3a22466a118dc9
T161_b9_Muscle_PCW10.fragments.tsv.gz.tbi 1.33 MB 9b72a2dcd0b1f5e53e2981d3e4b8e724
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 720ebc53415393c7e030d158f92c6bbf
statistics/