Resource

Id summary/liu2026Multiomics/atac_fragments/T164_b12_Lung_PCW10content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T164_b12_Lung_PCW10 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 12
  • modalities: ATAC
  • organ: Lung
  • pcw_age: 10
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T164_b12_Lung_PCW10
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T164
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL86_H07+D01+C06, CL86_H07+D01+D01, CL88_H08+C05+C05, CL84_H04+D04+C06, CL86_H06+D10+D10 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 19]
n
725,080,366
mean
1.2
sd
0.506

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 725080366
chr1 63882155
chr1_KI270706v1_random 5613
chr1_KI270707v1_random 1101
chr1_KI270708v1_random 558
chr1_KI270709v1_random 5828
chr1_KI270710v1_random 341
chr1_KI270711v1_random 3861
chr1_KI270712v1_random 4024
chr1_KI270713v1_random 18093
chr1_KI270714v1_random 8672
chr2 59247526
chr2_KI270715v1_random 249
chr2_KI270716v1_random 1022
chr3 48258370
chr3_GL000221v1_random 1380
chr4 39856513
chr4_GL000008v2_random 10171
chr5 41168092
chr5_GL000208v1_random 3853
chr6 42264949
chr7 38777224
chr8 33317285
chr9 30431582
chr9_KI270717v1_random 52
chr9_KI270718v1_random 714
chr9_KI270719v1_random 5150
chr9_KI270720v1_random 2322
chr10 33448570
chr11 37414699
chr11_KI270721v1_random 2090
chr12 34780426
chr13 20748076
chr14 22965832
chr14_GL000009v2_random 5037
chr14_GL000194v1_random 8824
chr14_GL000225v1_random 14810
chr14_KI270722v1_random 5042
chr14_KI270723v1_random 2200
chr14_KI270724v1_random 986
chr14_KI270725v1_random 3497
chr14_KI270726v1_random 1518
chr15 20870667
chr15_KI270727v1_random 1271
chr16 23845022
chr16_KI270728v1_random 8085
chr17 29058915
chr17_GL000205v2_random 55784
chr17_KI270729v1_random 12530
chr17_KI270730v1_random 3218
chr18 16823660
chr19 26883687
chr20 17493390
chr21 8437603
chr22 12864394
chr22_KI270731v1_random 513
chr22_KI270732v1_random 4709
chr22_KI270733v1_random 74754
chr22_KI270734v1_random 1744
chr22_KI270735v1_random 4832
chr22_KI270736v1_random 10339
chr22_KI270737v1_random 1227
chr22_KI270738v1_random 3632
chr22_KI270739v1_random 124
chrM 4219081
chrUn_GL000195v1 35243
chrUn_GL000213v1 352
chrUn_GL000214v1 1874
chrUn_GL000216v2 5138
chrUn_GL000218v1 10558
chrUn_GL000219v1 19700
chrUn_GL000220v1 9500
chrUn_GL000224v1 15439
chrUn_GL000226v1 7
chrUn_KI270302v1 17
chrUn_KI270303v1 17
chrUn_KI270304v1 8
chrUn_KI270305v1 10
chrUn_KI270310v1 25
chrUn_KI270311v1 73
chrUn_KI270312v1 1
chrUn_KI270315v1 10
chrUn_KI270316v1 9
chrUn_KI270317v1 14
chrUn_KI270320v1 99
chrUn_KI270322v1 97
chrUn_KI270329v1 1
chrUn_KI270330v1 801
chrUn_KI270333v1 398
chrUn_KI270336v1 244
chrUn_KI270337v1 616
chrUn_KI270362v1 57
chrUn_KI270363v1 42
chrUn_KI270364v1 4
chrUn_KI270366v1 33
chrUn_KI270382v1 18
chrUn_KI270383v1 1
chrUn_KI270384v1 2
chrUn_KI270385v1 5
chrUn_KI270386v1 2
chrUn_KI270387v1 2
chrUn_KI270388v1 1
chrUn_KI270389v1 3
chrUn_KI270390v1 5
chrUn_KI270391v1 2
chrUn_KI270392v1 8
chrUn_KI270393v1 26
chrUn_KI270394v1 3
chrUn_KI270395v1 18
chrUn_KI270396v1 2
chrUn_KI270411v1 16
chrUn_KI270412v1 4
chrUn_KI270414v1 4
chrUn_KI270417v1 136
chrUn_KI270418v1 21
chrUn_KI270419v1 9
chrUn_KI270420v1 60
chrUn_KI270422v1 42
chrUn_KI270423v1 15
chrUn_KI270424v1 3
chrUn_KI270425v1 9
chrUn_KI270429v1 256
chrUn_KI270435v1 4005
chrUn_KI270438v1 39883
chrUn_KI270442v1 28742
chrUn_KI270448v1 597
chrUn_KI270465v1 75
chrUn_KI270466v1 3338
chrUn_KI270467v1 10397
chrUn_KI270468v1 368
chrUn_KI270507v1 610
chrUn_KI270508v1 241
chrUn_KI270509v1 269
chrUn_KI270510v1 192
chrUn_KI270511v1 491
chrUn_KI270512v1 803
chrUn_KI270515v1 757
chrUn_KI270516v1 140
chrUn_KI270517v1 360
chrUn_KI270518v1 226
chrUn_KI270519v1 8826
chrUn_KI270521v1 280
chrUn_KI270522v1 133
chrUn_KI270528v1 3
chrUn_KI270529v1 11
chrUn_KI270530v1 13
chrUn_KI270538v1 4804
chrUn_KI270539v1 68
chrUn_KI270544v1 10
chrUn_KI270579v1 19
chrUn_KI270580v1 238
chrUn_KI270581v1 6
chrUn_KI270582v1 56
chrUn_KI270583v1 202
chrUn_KI270584v1 571
chrUn_KI270587v1 87
chrUn_KI270588v1 487
chrUn_KI270589v1 640
chrUn_KI270590v1 455
chrUn_KI270591v1 687
chrUn_KI270593v1 189
chrUn_KI270741v1 234
chrUn_KI270742v1 4479
chrUn_KI270743v1 6408
chrUn_KI270744v1 8865
chrUn_KI270745v1 365
chrUn_KI270746v1 5335
chrUn_KI270747v1 519
chrUn_KI270748v1 521
chrUn_KI270749v1 5463
chrUn_KI270750v1 6512
chrUn_KI270751v1 7741
chrUn_KI270753v1 429
chrUn_KI270754v1 975
chrUn_KI270755v1 723
chrUn_KI270756v1 1666
chrUn_KI270757v1 2636
chrX 16525598
chrY 933632
chrY_KI270740v1_random 438

Fragment lengths

fragments min max mean median
fragments 725080366 7 1992 254.76 208
global fragment-length histogram

Files

Filename Size md5
T164_b12_Lung_PCW10.fragments.tsv.gz 6.39 GB 17ceb0b5fadb50d26373f7ae75a571f9
T164_b12_Lung_PCW10.fragments.tsv.gz.tbi 1.82 MB 7cc9ffe79c7ef3b364e26ce8dc776218
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB ad68f1254566ec1900243314999e6b7f
statistics/