Resource

Id summary/liu2026Multiomics/atac_fragments/T165_b17_Spleen_PCW19content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T165_b17_Spleen_PCW19 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 17
  • modalities: ATAC
  • organ: Spleen
  • pcw_age: 19
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T165_b17_Spleen_PCW19
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T165
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL120_D07+E06+G04, CL119_D08+H04+A04, CL127_D11+C01+A03, CL121_D04+C09+H10, CL125_D10+B04+G08 (top 5 of 1768819 values)
count int

count
HISTOGRAM FOR count [1, 33]
n
784,213,584
mean
2.03
sd
1.62

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 784213584
chr1 68805431
chr1_KI270706v1_random 7438
chr1_KI270707v1_random 1069
chr1_KI270708v1_random 5030
chr1_KI270709v1_random 7205
chr1_KI270710v1_random 1557
chr1_KI270711v1_random 3271
chr1_KI270712v1_random 3416
chr1_KI270713v1_random 13092
chr1_KI270714v1_random 2225
chr2 62808897
chr2_KI270715v1_random 121
chr2_KI270716v1_random 681
chr3 51007766
chr3_GL000221v1_random 1607
chr4 41006550
chr4_GL000008v2_random 10794
chr5 42810219
chr5_GL000208v1_random 4423
chr6 45694503
chr7 40045029
chr8 35247127
chr9 32533401
chr9_KI270717v1_random 520
chr9_KI270718v1_random 709
chr9_KI270719v1_random 7513
chr9_KI270720v1_random 3133
chr10 36862053
chr11 40296953
chr11_KI270721v1_random 3465
chr12 38542702
chr13 21788027
chr14 25685754
chr14_GL000009v2_random 8323
chr14_GL000194v1_random 15410
chr14_GL000225v1_random 15548
chr14_KI270722v1_random 7144
chr14_KI270723v1_random 2772
chr14_KI270724v1_random 3356
chr14_KI270725v1_random 5694
chr14_KI270726v1_random 808
chr15 23600094
chr15_KI270727v1_random 1983
chr16 25967528
chr16_KI270728v1_random 10243
chr17 33576896
chr17_GL000205v2_random 65715
chr17_KI270729v1_random 12638
chr17_KI270730v1_random 2986
chr18 17568403
chr19 31044296
chr20 19409793
chr21 9204260
chr22 14669036
chr22_KI270731v1_random 902
chr22_KI270732v1_random 4585
chr22_KI270733v1_random 172813
chr22_KI270734v1_random 1098
chr22_KI270735v1_random 5832
chr22_KI270736v1_random 15234
chr22_KI270737v1_random 1377
chr22_KI270738v1_random 4062
chr22_KI270739v1_random 125
chrM 6638139
chrUn_GL000195v1 49894
chrUn_GL000213v1 509
chrUn_GL000214v1 4133
chrUn_GL000216v2 14596
chrUn_GL000218v1 5669
chrUn_GL000219v1 47772
chrUn_GL000220v1 21881
chrUn_GL000224v1 13071
chrUn_GL000226v1 23
chrUn_KI270302v1 11
chrUn_KI270303v1 31
chrUn_KI270304v1 66
chrUn_KI270305v1 25
chrUn_KI270310v1 151
chrUn_KI270311v1 56
chrUn_KI270312v1 4
chrUn_KI270315v1 8
chrUn_KI270316v1 5
chrUn_KI270317v1 14
chrUn_KI270320v1 170
chrUn_KI270322v1 112
chrUn_KI270329v1 3
chrUn_KI270330v1 272
chrUn_KI270333v1 207
chrUn_KI270336v1 73
chrUn_KI270337v1 398
chrUn_KI270362v1 54
chrUn_KI270363v1 38
chrUn_KI270364v1 4
chrUn_KI270366v1 45
chrUn_KI270374v1 1
chrUn_KI270378v1 5
chrUn_KI270382v1 75
chrUn_KI270383v1 1
chrUn_KI270384v1 10
chrUn_KI270385v1 10
chrUn_KI270386v1 2
chrUn_KI270387v1 2
chrUn_KI270388v1 1
chrUn_KI270389v1 12
chrUn_KI270390v1 17
chrUn_KI270391v1 19
chrUn_KI270392v1 12
chrUn_KI270393v1 14
chrUn_KI270395v1 10
chrUn_KI270396v1 3
chrUn_KI270411v1 25
chrUn_KI270412v1 12
chrUn_KI270414v1 10
chrUn_KI270417v1 110
chrUn_KI270418v1 71
chrUn_KI270419v1 22
chrUn_KI270420v1 82
chrUn_KI270422v1 53
chrUn_KI270423v1 11
chrUn_KI270424v1 1
chrUn_KI270425v1 6
chrUn_KI270429v1 265
chrUn_KI270435v1 5321
chrUn_KI270438v1 41455
chrUn_KI270442v1 36070
chrUn_KI270448v1 735
chrUn_KI270465v1 40
chrUn_KI270466v1 6130
chrUn_KI270467v1 16456
chrUn_KI270468v1 361
chrUn_KI270507v1 744
chrUn_KI270508v1 377
chrUn_KI270509v1 306
chrUn_KI270510v1 199
chrUn_KI270511v1 546
chrUn_KI270512v1 965
chrUn_KI270515v1 900
chrUn_KI270516v1 181
chrUn_KI270517v1 466
chrUn_KI270518v1 248
chrUn_KI270519v1 7654
chrUn_KI270521v1 376
chrUn_KI270522v1 189
chrUn_KI270528v1 2
chrUn_KI270529v1 19
chrUn_KI270530v1 14
chrUn_KI270538v1 6747
chrUn_KI270539v1 24
chrUn_KI270544v1 25
chrUn_KI270579v1 40
chrUn_KI270580v1 240
chrUn_KI270581v1 10
chrUn_KI270582v1 75
chrUn_KI270583v1 227
chrUn_KI270584v1 671
chrUn_KI270587v1 172
chrUn_KI270588v1 710
chrUn_KI270589v1 816
chrUn_KI270590v1 625
chrUn_KI270591v1 995
chrUn_KI270593v1 217
chrUn_KI270741v1 386
chrUn_KI270742v1 5922
chrUn_KI270743v1 7479
chrUn_KI270744v1 13539
chrUn_KI270745v1 395
chrUn_KI270746v1 8172
chrUn_KI270747v1 886
chrUn_KI270748v1 312
chrUn_KI270749v1 6816
chrUn_KI270750v1 9242
chrUn_KI270751v1 9678
chrUn_KI270752v1 1
chrUn_KI270753v1 624
chrUn_KI270754v1 1227
chrUn_KI270755v1 417
chrUn_KI270756v1 1662
chrUn_KI270757v1 3428
chrX 17588114
chrY 1014236
chrY_KI270740v1_random 769

Fragment lengths

fragments min max mean median
fragments 784213584 7 1992 261.03 191
global fragment-length histogram

Files

Filename Size md5
T165_b17_Spleen_PCW19.fragments.tsv.gz 7.08 GB c6a9804ee2be4f1e22f1eac444979fde
T165_b17_Spleen_PCW19.fragments.tsv.gz.tbi 1.99 MB 1334cf49db11c742712be4d18c0611fb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.45 KB 176846128b54d0b678cb859815a5d8f7
statistics/