Resource

Id summary/liu2026Multiomics/atac_fragments/T175_b18_Lung_PCW19content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T175_b18_Lung_PCW19 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 18
  • modalities: ATAC
  • organ: Lung
  • pcw_age: 19
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T175_b18_Lung_PCW19
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T175
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL135_A06+H07+D04, CL134_A06+E09+F07, CL135_A12+B01+E01, CL137_A02+E11+A12, CL135_A07+D06+D12 (top 5 of 884692 values)
count int

count
HISTOGRAM FOR count [1, 26]
n
323,136,783
mean
1.94
sd
1.53

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 323136783
chr1 29301507
chr1_KI270706v1_random 1764
chr1_KI270707v1_random 217
chr1_KI270708v1_random 1098
chr1_KI270709v1_random 1626
chr1_KI270710v1_random 296
chr1_KI270711v1_random 958
chr1_KI270712v1_random 1261
chr1_KI270713v1_random 8429
chr1_KI270714v1_random 1605
chr2 25060083
chr2_KI270715v1_random 40
chr2_KI270716v1_random 125
chr3 20446638
chr3_GL000221v1_random 314
chr4 15601327
chr4_GL000008v2_random 2446
chr5 16860105
chr5_GL000208v1_random 891
chr6 18451223
chr7 16584277
chr8 13742000
chr9 13887638
chr9_KI270717v1_random 221
chr9_KI270718v1_random 197
chr9_KI270719v1_random 1556
chr9_KI270720v1_random 596
chr10 14853085
chr11 16996282
chr11_KI270721v1_random 1844
chr12 15472407
chr13 8226087
chr14 10433358
chr14_GL000009v2_random 1810
chr14_GL000194v1_random 2751
chr14_GL000225v1_random 3270
chr14_KI270722v1_random 1549
chr14_KI270723v1_random 548
chr14_KI270724v1_random 636
chr14_KI270725v1_random 1175
chr14_KI270726v1_random 98
chr15 9502211
chr15_KI270727v1_random 695
chr16 11468015
chr16_KI270728v1_random 2112
chr17 15273965
chr17_GL000205v2_random 20008
chr17_KI270729v1_random 2419
chr17_KI270730v1_random 694
chr18 7007888
chr19 14900981
chr20 7972964
chr21 3645290
chr22 6382631
chr22_KI270731v1_random 550
chr22_KI270732v1_random 1008
chr22_KI270733v1_random 85967
chr22_KI270734v1_random 761
chr22_KI270735v1_random 1229
chr22_KI270736v1_random 2941
chr22_KI270737v1_random 273
chr22_KI270738v1_random 727
chr22_KI270739v1_random 17
chrM 3601178
chrUn_GL000195v1 20729
chrUn_GL000213v1 88
chrUn_GL000214v1 745
chrUn_GL000216v2 3006
chrUn_GL000218v1 1132
chrUn_GL000219v1 15053
chrUn_GL000220v1 7446
chrUn_GL000224v1 2584
chrUn_GL000226v1 8
chrUn_KI270302v1 4
chrUn_KI270303v1 2
chrUn_KI270304v1 15
chrUn_KI270305v1 6
chrUn_KI270310v1 47
chrUn_KI270311v1 15
chrUn_KI270315v1 3
chrUn_KI270316v1 1
chrUn_KI270317v1 4
chrUn_KI270320v1 46
chrUn_KI270322v1 23
chrUn_KI270329v1 1
chrUn_KI270330v1 63
chrUn_KI270333v1 55
chrUn_KI270336v1 26
chrUn_KI270337v1 108
chrUn_KI270362v1 7
chrUn_KI270363v1 11
chrUn_KI270366v1 6
chrUn_KI270382v1 23
chrUn_KI270384v1 3
chrUn_KI270386v1 3
chrUn_KI270388v1 1
chrUn_KI270389v1 2
chrUn_KI270390v1 8
chrUn_KI270391v1 7
chrUn_KI270392v1 2
chrUn_KI270393v1 3
chrUn_KI270395v1 5
chrUn_KI270396v1 2
chrUn_KI270411v1 4
chrUn_KI270412v1 1
chrUn_KI270417v1 36
chrUn_KI270418v1 14
chrUn_KI270420v1 11
chrUn_KI270422v1 8
chrUn_KI270423v1 5
chrUn_KI270424v1 1
chrUn_KI270429v1 50
chrUn_KI270435v1 1071
chrUn_KI270438v1 7777
chrUn_KI270442v1 7510
chrUn_KI270448v1 133
chrUn_KI270465v1 8
chrUn_KI270466v1 1592
chrUn_KI270467v1 4435
chrUn_KI270468v1 69
chrUn_KI270507v1 127
chrUn_KI270508v1 87
chrUn_KI270509v1 67
chrUn_KI270510v1 35
chrUn_KI270511v1 124
chrUn_KI270512v1 166
chrUn_KI270515v1 151
chrUn_KI270516v1 28
chrUn_KI270517v1 85
chrUn_KI270518v1 46
chrUn_KI270519v1 1426
chrUn_KI270521v1 80
chrUn_KI270522v1 33
chrUn_KI270528v1 1
chrUn_KI270529v1 3
chrUn_KI270530v1 4
chrUn_KI270538v1 1393
chrUn_KI270539v1 3
chrUn_KI270544v1 1
chrUn_KI270579v1 7
chrUn_KI270580v1 52
chrUn_KI270582v1 8
chrUn_KI270583v1 47
chrUn_KI270584v1 135
chrUn_KI270587v1 42
chrUn_KI270588v1 120
chrUn_KI270589v1 181
chrUn_KI270590v1 104
chrUn_KI270591v1 235
chrUn_KI270593v1 37
chrUn_KI270741v1 52
chrUn_KI270742v1 1268
chrUn_KI270743v1 1378
chrUn_KI270744v1 2535
chrUn_KI270745v1 98
chrUn_KI270746v1 1671
chrUn_KI270747v1 224
chrUn_KI270748v1 92
chrUn_KI270749v1 1480
chrUn_KI270750v1 1865
chrUn_KI270751v1 1757
chrUn_KI270753v1 131
chrUn_KI270754v1 295
chrUn_KI270755v1 184
chrUn_KI270756v1 338
chrUn_KI270757v1 650
chrX 6870030
chrY 345818
chrY_KI270740v1_random 209

Fragment lengths

fragments min max mean median
fragments 323136783 7 1992 274.83 206
global fragment-length histogram

Files

Filename Size md5
T175_b18_Lung_PCW19.fragments.tsv.gz 2.89 GB 5d40c41fdd3f03e34246928599761c06
T175_b18_Lung_PCW19.fragments.tsv.gz.tbi 1.28 MB 850da5c9b5885d93768ac014c562d50f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 3b0f1b8621aab9b1428f9b5803e0372d
statistics/