Resource

Id summary/liu2026Multiomics/atac_fragments/T176_b16_Thyroid_PCW19content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T176_b16_Thyroid_PCW19 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 16
  • modalities: ATAC
  • organ: Thyroid
  • pcw_age: 19
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T176_b16_Thyroid_PCW19
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T176
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL131_F07+E06+F05, CL131_F09+E08+C07, CL131_F03+C12+A11, CL131_F04+H09+A05, CL132_F06+B08+E08 (top 5 of 207074 values)
count int

count
HISTOGRAM FOR count [1, 91]
n
35,874,804
mean
6.84
sd
8.41

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 35874804
chr1 3192157
chr1_KI270706v1_random 231
chr1_KI270707v1_random 46
chr1_KI270708v1_random 155
chr1_KI270709v1_random 206
chr1_KI270710v1_random 40
chr1_KI270711v1_random 172
chr1_KI270712v1_random 197
chr1_KI270713v1_random 862
chr1_KI270714v1_random 138
chr2 2754971
chr2_KI270715v1_random 9
chr2_KI270716v1_random 40
chr3 2263308
chr3_GL000221v1_random 53
chr4 1799120
chr4_GL000008v2_random 433
chr5 1842894
chr5_GL000208v1_random 115
chr6 2022016
chr7 1793358
chr8 1622409
chr9 1554987
chr9_KI270717v1_random 29
chr9_KI270718v1_random 21
chr9_KI270719v1_random 230
chr9_KI270720v1_random 57
chr10 1647491
chr11 1855351
chr11_KI270721v1_random 110
chr12 1706779
chr13 924129
chr14 1196536
chr14_GL000009v2_random 253
chr14_GL000194v1_random 478
chr14_GL000225v1_random 462
chr14_KI270722v1_random 189
chr14_KI270723v1_random 62
chr14_KI270724v1_random 92
chr14_KI270725v1_random 149
chr14_KI270726v1_random 9
chr15 1068525
chr15_KI270727v1_random 124
chr16 1292247
chr16_KI270728v1_random 291
chr17 1646123
chr17_GL000205v2_random 2756
chr17_KI270729v1_random 381
chr17_KI270730v1_random 104
chr18 773834
chr19 1554108
chr20 926345
chr21 389694
chr22 735862
chr22_KI270731v1_random 94
chr22_KI270732v1_random 99
chr22_KI270733v1_random 18514
chr22_KI270734v1_random 121
chr22_KI270735v1_random 148
chr22_KI270736v1_random 476
chr22_KI270737v1_random 57
chr22_KI270738v1_random 121
chr22_KI270739v1_random 8
chrM 451122
chrUn_GL000195v1 2128
chrUn_GL000213v1 25
chrUn_GL000214v1 136
chrUn_GL000216v2 536
chrUn_GL000218v1 152
chrUn_GL000219v1 1588
chrUn_GL000220v1 1558
chrUn_GL000224v1 401
chrUn_GL000226v1 3
chrUn_KI270303v1 1
chrUn_KI270304v1 3
chrUn_KI270305v1 1
chrUn_KI270310v1 7
chrUn_KI270320v1 7
chrUn_KI270322v1 1
chrUn_KI270330v1 12
chrUn_KI270333v1 10
chrUn_KI270336v1 3
chrUn_KI270337v1 13
chrUn_KI270362v1 3
chrUn_KI270363v1 3
chrUn_KI270366v1 2
chrUn_KI270382v1 4
chrUn_KI270390v1 1
chrUn_KI270391v1 1
chrUn_KI270411v1 3
chrUn_KI270417v1 3
chrUn_KI270418v1 4
chrUn_KI270419v1 2
chrUn_KI270420v1 1
chrUn_KI270429v1 15
chrUn_KI270435v1 152
chrUn_KI270438v1 1299
chrUn_KI270442v1 1048
chrUn_KI270448v1 19
chrUn_KI270465v1 3
chrUn_KI270466v1 137
chrUn_KI270467v1 410
chrUn_KI270468v1 10
chrUn_KI270507v1 18
chrUn_KI270508v1 11
chrUn_KI270509v1 10
chrUn_KI270510v1 7
chrUn_KI270511v1 20
chrUn_KI270512v1 19
chrUn_KI270515v1 16
chrUn_KI270516v1 8
chrUn_KI270517v1 13
chrUn_KI270518v1 5
chrUn_KI270519v1 193
chrUn_KI270521v1 7
chrUn_KI270522v1 3
chrUn_KI270538v1 217
chrUn_KI270544v1 1
chrUn_KI270579v1 1
chrUn_KI270580v1 7
chrUn_KI270583v1 6
chrUn_KI270584v1 21
chrUn_KI270587v1 5
chrUn_KI270588v1 14
chrUn_KI270589v1 23
chrUn_KI270590v1 13
chrUn_KI270591v1 36
chrUn_KI270593v1 7
chrUn_KI270741v1 22
chrUn_KI270742v1 181
chrUn_KI270743v1 255
chrUn_KI270744v1 390
chrUn_KI270745v1 13
chrUn_KI270746v1 215
chrUn_KI270747v1 34
chrUn_KI270748v1 21
chrUn_KI270749v1 180
chrUn_KI270750v1 216
chrUn_KI270751v1 252
chrUn_KI270753v1 30
chrUn_KI270754v1 53
chrUn_KI270755v1 22
chrUn_KI270756v1 66
chrUn_KI270757v1 76
chrX 776516
chrY 44350
chrY_KI270740v1_random 28

Fragment lengths

fragments min max mean median
fragments 35874804 7 1992 276.8 205
global fragment-length histogram

Files

Filename Size md5
T176_b16_Thyroid_PCW19.fragments.tsv.gz 338.17 MB aec3fe8fe3eabd0773796b566beca315
T176_b16_Thyroid_PCW19.fragments.tsv.gz.tbi 591.46 KB fe7bdfebfd7ee1c7958837161b9478c9
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.45 KB 2a5864354d3ef0f8bf9b7d07fbe235cf
statistics/