Resource

Id summary/liu2026Multiomics/atac_fragments/T180_b13_Eye_PCW19content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T180_b13_Eye_PCW19 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 13
  • modalities: ATAC
  • organ: Eye
  • pcw_age: 19
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T180_b13_Eye_PCW19
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T180
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL92_F01+B05+E01, CL95_F10+A11+G12, CL96_F01+E09+D08, CL89_F06+D09+A01, CL89_F02+G08+B04 (top 5 of 884735 values)
count int

count
HISTOGRAM FOR count [1, 21]
n
251,899,968
mean
1.67
sd
1.18

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 251899968
chr1 21472358
chr1_KI270706v1_random 3349
chr1_KI270707v1_random 450
chr1_KI270708v1_random 2145
chr1_KI270709v1_random 3737
chr1_KI270710v1_random 700
chr1_KI270711v1_random 1309
chr1_KI270712v1_random 1435
chr1_KI270713v1_random 3418
chr1_KI270714v1_random 1216
chr2 20405131
chr2_KI270715v1_random 64
chr2_KI270716v1_random 404
chr3 16967374
chr3_GL000221v1_random 686
chr4 15008270
chr4_GL000008v2_random 5557
chr5 14685363
chr5_GL000208v1_random 2251
chr6 14673599
chr7 13528730
chr8 11928059
chr9 10366185
chr9_KI270717v1_random 134
chr9_KI270718v1_random 348
chr9_KI270719v1_random 3395
chr9_KI270720v1_random 1389
chr10 11428064
chr11 12871997
chr11_KI270721v1_random 489
chr12 12102158
chr13 7595945
chr14 7961728
chr14_GL000009v2_random 3794
chr14_GL000194v1_random 6366
chr14_GL000225v1_random 8691
chr14_KI270722v1_random 3416
chr14_KI270723v1_random 1283
chr14_KI270724v1_random 1367
chr14_KI270725v1_random 2509
chr14_KI270726v1_random 50
chr15 6991979
chr15_KI270727v1_random 669
chr16 7839436
chr16_KI270728v1_random 3964
chr17 9155970
chr17_GL000205v2_random 17966
chr17_KI270729v1_random 7606
chr17_KI270730v1_random 1988
chr18 6119168
chr19 7868350
chr20 5880846
chr21 2956971
chr22 4079426
chr22_KI270731v1_random 272
chr22_KI270732v1_random 2032
chr22_KI270733v1_random 32343
chr22_KI270734v1_random 426
chr22_KI270735v1_random 2765
chr22_KI270736v1_random 7974
chr22_KI270737v1_random 772
chr22_KI270738v1_random 2229
chr22_KI270739v1_random 46
chrM 2877251
chrUn_GL000195v1 10096
chrUn_GL000213v1 258
chrUn_GL000214v1 1645
chrUn_GL000216v2 7572
chrUn_GL000218v1 2823
chrUn_GL000219v1 10611
chrUn_GL000220v1 4608
chrUn_GL000224v1 5506
chrUn_GL000226v1 9
chrUn_KI270302v1 7
chrUn_KI270303v1 17
chrUn_KI270304v1 37
chrUn_KI270305v1 21
chrUn_KI270310v1 51
chrUn_KI270311v1 24
chrUn_KI270312v1 1
chrUn_KI270315v1 1
chrUn_KI270316v1 1
chrUn_KI270317v1 2
chrUn_KI270320v1 93
chrUn_KI270322v1 62
chrUn_KI270329v1 1
chrUn_KI270330v1 109
chrUn_KI270333v1 106
chrUn_KI270336v1 55
chrUn_KI270337v1 186
chrUn_KI270362v1 28
chrUn_KI270363v1 31
chrUn_KI270364v1 2
chrUn_KI270366v1 25
chrUn_KI270374v1 2
chrUn_KI270378v1 3
chrUn_KI270382v1 34
chrUn_KI270383v1 1
chrUn_KI270384v1 5
chrUn_KI270385v1 1
chrUn_KI270386v1 3
chrUn_KI270387v1 1
chrUn_KI270388v1 2
chrUn_KI270389v1 9
chrUn_KI270390v1 7
chrUn_KI270391v1 6
chrUn_KI270392v1 5
chrUn_KI270393v1 3
chrUn_KI270395v1 3
chrUn_KI270396v1 2
chrUn_KI270411v1 13
chrUn_KI270412v1 5
chrUn_KI270414v1 2
chrUn_KI270417v1 76
chrUn_KI270418v1 33
chrUn_KI270419v1 18
chrUn_KI270420v1 42
chrUn_KI270422v1 26
chrUn_KI270423v1 10
chrUn_KI270425v1 1
chrUn_KI270429v1 138
chrUn_KI270435v1 2770
chrUn_KI270438v1 24763
chrUn_KI270442v1 17568
chrUn_KI270448v1 382
chrUn_KI270465v1 32
chrUn_KI270466v1 2862
chrUn_KI270467v1 7966
chrUn_KI270468v1 211
chrUn_KI270507v1 347
chrUn_KI270508v1 164
chrUn_KI270509v1 161
chrUn_KI270510v1 101
chrUn_KI270511v1 329
chrUn_KI270512v1 430
chrUn_KI270515v1 453
chrUn_KI270516v1 69
chrUn_KI270517v1 250
chrUn_KI270518v1 111
chrUn_KI270519v1 3780
chrUn_KI270521v1 141
chrUn_KI270522v1 66
chrUn_KI270528v1 4
chrUn_KI270529v1 5
chrUn_KI270530v1 6
chrUn_KI270538v1 3261
chrUn_KI270539v1 10
chrUn_KI270544v1 7
chrUn_KI270579v1 31
chrUn_KI270580v1 108
chrUn_KI270581v1 5
chrUn_KI270582v1 25
chrUn_KI270583v1 119
chrUn_KI270584v1 336
chrUn_KI270587v1 182
chrUn_KI270588v1 391
chrUn_KI270589v1 434
chrUn_KI270590v1 278
chrUn_KI270591v1 483
chrUn_KI270593v1 120
chrUn_KI270741v1 172
chrUn_KI270742v1 2488
chrUn_KI270743v1 3348
chrUn_KI270744v1 5645
chrUn_KI270745v1 154
chrUn_KI270746v1 3688
chrUn_KI270747v1 407
chrUn_KI270748v1 133
chrUn_KI270749v1 3190
chrUn_KI270750v1 4218
chrUn_KI270751v1 4455
chrUn_KI270753v1 339
chrUn_KI270754v1 635
chrUn_KI270755v1 145
chrUn_KI270756v1 1043
chrUn_KI270757v1 1688
chrX 6477539
chrY 371873
chrY_KI270740v1_random 246

Fragment lengths

fragments min max mean median
fragments 251899968 7 1992 295.4 225
global fragment-length histogram

Files

Filename Size md5
T180_b13_Eye_PCW19.fragments.tsv.gz 2.46 GB 3b0b5bcf8816098d6fc19d00b18413ce
T180_b13_Eye_PCW19.fragments.tsv.gz.tbi 1.23 MB 9433cdc71e981607d76cd66d7a16600e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB 477d116e4e4a525a41fc85628c2c8290
statistics/