Resource

Id summary/liu2026Multiomics/atac_fragments/T186_b13_Eye_PCW23content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T186_b13_Eye_PCW23 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 13
  • modalities: ATAC
  • organ: Eye
  • pcw_age: 23
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T186_b13_Eye_PCW23
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T186
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL94_E04+H08+D12, CL89_E12+A09+A02, CL92_E12+D11+F06, CL89_E03+D02+F03, CL89_E05+B04+H08 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 22]
n
380,308,436
mean
1.73
sd
1.23

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 380308436
chr1 32765130
chr1_KI270706v1_random 2990
chr1_KI270707v1_random 543
chr1_KI270708v1_random 286
chr1_KI270709v1_random 3544
chr1_KI270710v1_random 221
chr1_KI270711v1_random 1787
chr1_KI270712v1_random 1357
chr1_KI270713v1_random 6190
chr1_KI270714v1_random 3985
chr2 30697858
chr2_KI270715v1_random 170
chr2_KI270716v1_random 465
chr3 25110565
chr3_GL000221v1_random 667
chr4 21806707
chr4_GL000008v2_random 4806
chr5 21768998
chr5_GL000208v1_random 2429
chr6 21611607
chr7 20564322
chr8 17920231
chr9 15789789
chr9_KI270717v1_random 457
chr9_KI270718v1_random 620
chr9_KI270719v1_random 3219
chr9_KI270720v1_random 1414
chr10 17177125
chr11 20077159
chr11_KI270721v1_random 480
chr12 18562238
chr13 11312869
chr14 12487014
chr14_GL000009v2_random 4180
chr14_GL000194v1_random 4626
chr14_GL000225v1_random 16660
chr14_KI270722v1_random 4219
chr14_KI270723v1_random 1431
chr14_KI270724v1_random 697
chr14_KI270725v1_random 2574
chr14_KI270726v1_random 85
chr15 11009225
chr15_KI270727v1_random 830
chr16 12255781
chr16_KI270728v1_random 3918
chr17 14907864
chr17_GL000205v2_random 22215
chr17_KI270729v1_random 7407
chr17_KI270730v1_random 1928
chr18 9416129
chr19 13031454
chr20 9293598
chr21 4346669
chr22 6404904
chr22_KI270731v1_random 708
chr22_KI270732v1_random 1784
chr22_KI270733v1_random 50822
chr22_KI270734v1_random 882
chr22_KI270735v1_random 2684
chr22_KI270736v1_random 5314
chr22_KI270737v1_random 670
chr22_KI270738v1_random 2063
chr22_KI270739v1_random 92
chrM 2371034
chrUn_GL000195v1 13251
chrUn_GL000213v1 358
chrUn_GL000214v1 1253
chrUn_GL000216v2 3724
chrUn_GL000218v1 5263
chrUn_GL000219v1 11248
chrUn_GL000220v1 7386
chrUn_GL000224v1 7107
chrUn_GL000226v1 23
chrUn_KI270302v1 18
chrUn_KI270303v1 18
chrUn_KI270304v1 9
chrUn_KI270305v1 3
chrUn_KI270310v1 39
chrUn_KI270311v1 24
chrUn_KI270315v1 3
chrUn_KI270316v1 3
chrUn_KI270317v1 4
chrUn_KI270320v1 35
chrUn_KI270322v1 39
chrUn_KI270329v1 3
chrUn_KI270330v1 309
chrUn_KI270333v1 102
chrUn_KI270336v1 58
chrUn_KI270337v1 160
chrUn_KI270362v1 22
chrUn_KI270363v1 23
chrUn_KI270364v1 1
chrUn_KI270366v1 18
chrUn_KI270374v1 1
chrUn_KI270378v1 4
chrUn_KI270381v1 1
chrUn_KI270382v1 39
chrUn_KI270383v1 2
chrUn_KI270384v1 8
chrUn_KI270385v1 5
chrUn_KI270386v1 1
chrUn_KI270387v1 1
chrUn_KI270389v1 1
chrUn_KI270390v1 3
chrUn_KI270391v1 1
chrUn_KI270392v1 6
chrUn_KI270393v1 3
chrUn_KI270395v1 1
chrUn_KI270396v1 8
chrUn_KI270411v1 9
chrUn_KI270412v1 11
chrUn_KI270414v1 3
chrUn_KI270417v1 48
chrUn_KI270418v1 31
chrUn_KI270419v1 15
chrUn_KI270420v1 47
chrUn_KI270422v1 36
chrUn_KI270423v1 11
chrUn_KI270424v1 16
chrUn_KI270425v1 6
chrUn_KI270429v1 82
chrUn_KI270435v1 2686
chrUn_KI270438v1 26858
chrUn_KI270442v1 17498
chrUn_KI270448v1 373
chrUn_KI270465v1 78
chrUn_KI270466v1 1341
chrUn_KI270467v1 4663
chrUn_KI270468v1 206
chrUn_KI270507v1 330
chrUn_KI270508v1 169
chrUn_KI270509v1 158
chrUn_KI270510v1 92
chrUn_KI270511v1 280
chrUn_KI270512v1 427
chrUn_KI270515v1 432
chrUn_KI270516v1 85
chrUn_KI270517v1 210
chrUn_KI270518v1 113
chrUn_KI270519v1 3681
chrUn_KI270521v1 153
chrUn_KI270522v1 87
chrUn_KI270528v1 2
chrUn_KI270529v1 8
chrUn_KI270530v1 14
chrUn_KI270538v1 2836
chrUn_KI270539v1 49
chrUn_KI270544v1 18
chrUn_KI270579v1 23
chrUn_KI270580v1 112
chrUn_KI270581v1 4
chrUn_KI270582v1 32
chrUn_KI270583v1 124
chrUn_KI270584v1 340
chrUn_KI270587v1 231
chrUn_KI270588v1 381
chrUn_KI270589v1 422
chrUn_KI270590v1 275
chrUn_KI270591v1 471
chrUn_KI270593v1 101
chrUn_KI270741v1 99
chrUn_KI270742v1 2810
chrUn_KI270743v1 2405
chrUn_KI270744v1 6378
chrUn_KI270745v1 293
chrUn_KI270746v1 3215
chrUn_KI270747v1 410
chrUn_KI270748v1 143
chrUn_KI270749v1 2920
chrUn_KI270750v1 4284
chrUn_KI270751v1 3901
chrUn_KI270753v1 456
chrUn_KI270754v1 857
chrUn_KI270755v1 163
chrUn_KI270756v1 1168
chrUn_KI270757v1 1578
chrX 8877869
chrY 423263
chrY_KI270740v1_random 268

Fragment lengths

fragments min max mean median
fragments 380308436 7 1992 297.16 226
global fragment-length histogram

Files

Filename Size md5
T186_b13_Eye_PCW23.fragments.tsv.gz 3.61 GB dcdafbcb61a819cdacb797190d4f2902
T186_b13_Eye_PCW23.fragments.tsv.gz.tbi 1.42 MB aaa2133459f26344156167b308061240
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB f3eebc5d2d616026c87f578624ed2d0a
statistics/