Resource

Id summary/liu2026Multiomics/atac_fragments/T187_b19_Skin_PCW23content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T187_b19_Skin_PCW23 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 19
  • modalities: ATAC
  • organ: Skin
  • pcw_age: 23
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T187_b19_Skin_PCW23
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T187
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL147_E09+G08+H06, CL147_F10+C02+E03, CL147_D12+B08+H04, CL142_D09+F12+D03, CL146_E08+F06+F10 (top 5 of 1327103 values)
count int

count
HISTOGRAM FOR count [1, 25]
n
474,987,993
mean
1.25
sd
0.563

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 474987993
chr1 39515552
chr1_KI270706v1_random 9233
chr1_KI270707v1_random 1971
chr1_KI270708v1_random 918
chr1_KI270709v1_random 12105
chr1_KI270710v1_random 766
chr1_KI270711v1_random 2458
chr1_KI270712v1_random 3394
chr1_KI270713v1_random 5656
chr1_KI270714v1_random 3285
chr2 39527517
chr2_KI270715v1_random 639
chr2_KI270716v1_random 1457
chr3 32905192
chr3_GL000221v1_random 1722
chr4 30254766
chr4_GL000008v2_random 13094
chr5 28887843
chr5_GL000208v1_random 8254
chr6 28378721
chr7 26195641
chr8 23717274
chr9 19363169
chr9_KI270717v1_random 412
chr9_KI270718v1_random 699
chr9_KI270719v1_random 10028
chr9_KI270720v1_random 4587
chr10 21677487
chr11 23895022
chr11_KI270721v1_random 614
chr12 22955322
chr13 15016659
chr14 14911063
chr14_GL000009v2_random 13542
chr14_GL000194v1_random 12395
chr14_GL000225v1_random 52562
chr14_KI270722v1_random 15170
chr14_KI270723v1_random 4238
chr14_KI270724v1_random 2121
chr14_KI270725v1_random 7687
chr14_KI270726v1_random 365
chr15 12702802
chr15_KI270727v1_random 1799
chr16 14287832
chr16_KI270728v1_random 14517
chr17 15462587
chr17_GL000205v2_random 44909
chr17_KI270729v1_random 30011
chr17_KI270730v1_random 6453
chr18 11694498
chr19 13161674
chr20 10499824
chr21 5575138
chr22 6913217
chr22_KI270731v1_random 1068
chr22_KI270732v1_random 5472
chr22_KI270733v1_random 38537
chr22_KI270734v1_random 1265
chr22_KI270735v1_random 8884
chr22_KI270736v1_random 17057
chr22_KI270737v1_random 2510
chr22_KI270738v1_random 7340
chr22_KI270739v1_random 352
chrM 2976667
chrUn_GL000195v1 15144
chrUn_GL000213v1 1040
chrUn_GL000214v1 3588
chrUn_GL000216v2 14551
chrUn_GL000218v1 15583
chrUn_GL000219v1 19748
chrUn_GL000220v1 7887
chrUn_GL000224v1 19617
chrUn_GL000226v1 43
chrUn_KI270302v1 59
chrUn_KI270303v1 84
chrUn_KI270304v1 25
chrUn_KI270305v1 15
chrUn_KI270310v1 94
chrUn_KI270311v1 92
chrUn_KI270312v1 8
chrUn_KI270315v1 4
chrUn_KI270316v1 7
chrUn_KI270317v1 19
chrUn_KI270320v1 85
chrUn_KI270322v1 127
chrUn_KI270330v1 799
chrUn_KI270333v1 536
chrUn_KI270335v1 1
chrUn_KI270336v1 356
chrUn_KI270337v1 892
chrUn_KI270362v1 101
chrUn_KI270363v1 77
chrUn_KI270364v1 3
chrUn_KI270366v1 78
chrUn_KI270374v1 1
chrUn_KI270378v1 16
chrUn_KI270382v1 97
chrUn_KI270383v1 5
chrUn_KI270384v1 27
chrUn_KI270385v1 12
chrUn_KI270386v1 8
chrUn_KI270389v1 11
chrUn_KI270390v1 12
chrUn_KI270391v1 18
chrUn_KI270392v1 33
chrUn_KI270393v1 10
chrUn_KI270394v1 1
chrUn_KI270395v1 9
chrUn_KI270396v1 15
chrUn_KI270411v1 24
chrUn_KI270412v1 29
chrUn_KI270414v1 15
chrUn_KI270417v1 124
chrUn_KI270418v1 96
chrUn_KI270419v1 43
chrUn_KI270420v1 128
chrUn_KI270422v1 129
chrUn_KI270423v1 47
chrUn_KI270424v1 58
chrUn_KI270425v1 42
chrUn_KI270429v1 255
chrUn_KI270435v1 10308
chrUn_KI270438v1 122355
chrUn_KI270442v1 63635
chrUn_KI270448v1 1253
chrUn_KI270465v1 286
chrUn_KI270466v1 6195
chrUn_KI270467v1 23814
chrUn_KI270468v1 749
chrUn_KI270507v1 1370
chrUn_KI270508v1 599
chrUn_KI270509v1 666
chrUn_KI270510v1 379
chrUn_KI270511v1 1137
chrUn_KI270512v1 1807
chrUn_KI270515v1 1721
chrUn_KI270516v1 322
chrUn_KI270517v1 861
chrUn_KI270518v1 511
chrUn_KI270519v1 14366
chrUn_KI270521v1 597
chrUn_KI270522v1 320
chrUn_KI270528v1 9
chrUn_KI270529v1 24
chrUn_KI270530v1 37
chrUn_KI270538v1 9390
chrUn_KI270539v1 72
chrUn_KI270544v1 49
chrUn_KI270579v1 79
chrUn_KI270580v1 424
chrUn_KI270581v1 7
chrUn_KI270582v1 112
chrUn_KI270583v1 369
chrUn_KI270584v1 1293
chrUn_KI270587v1 285
chrUn_KI270588v1 1449
chrUn_KI270589v1 1492
chrUn_KI270590v1 1156
chrUn_KI270591v1 1867
chrUn_KI270593v1 467
chrUn_KI270741v1 260
chrUn_KI270742v1 7936
chrUn_KI270743v1 7266
chrUn_KI270744v1 18828
chrUn_KI270745v1 525
chrUn_KI270746v1 10733
chrUn_KI270747v1 1107
chrUn_KI270748v1 348
chrUn_KI270749v1 8910
chrUn_KI270750v1 14391
chrUn_KI270751v1 13681
chrUn_KI270753v1 1325
chrUn_KI270754v1 2245
chrUn_KI270755v1 301
chrUn_KI270756v1 4615
chrUn_KI270757v1 6007
chrX 12592880
chrY 1077030
chrY_KI270740v1_random 832

Fragment lengths

fragments min max mean median
fragments 474987993 7 1992 255.23 194
global fragment-length histogram

Files

Filename Size md5
T187_b19_Skin_PCW23.fragments.tsv.gz 4.58 GB 02d4394804288837f1c7b49380b0fbc0
T187_b19_Skin_PCW23.fragments.tsv.gz.tbi 1.41 MB 8442763a006b0177cfb17996d99ec0aa
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB f1d10e40f9ecb512074ea1aa4d98111a
statistics/