Resource

Id summary/liu2026Multiomics/atac_fragments/T198_b18_Lung_PCW23content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T198_b18_Lung_PCW23 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 18
  • modalities: ATAC
  • organ: Lung
  • pcw_age: 23
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T198_b18_Lung_PCW23
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T198
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL134_F11+F02+E02, CL133_F03+D10+A10, CL139_F01+C12+G12, CL135_F08+E03+F02, CL139_F10+C03+B02 (top 5 of 884732 values)
count int

count
HISTOGRAM FOR count [1, 26]
n
474,724,244
mean
1.95
sd
1.52

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 474724244
chr1 41607320
chr1_KI270706v1_random 4016
chr1_KI270707v1_random 737
chr1_KI270708v1_random 414
chr1_KI270709v1_random 3818
chr1_KI270710v1_random 258
chr1_KI270711v1_random 1773
chr1_KI270712v1_random 2043
chr1_KI270713v1_random 11742
chr1_KI270714v1_random 4348
chr2 36758960
chr2_KI270715v1_random 250
chr2_KI270716v1_random 462
chr3 30417749
chr3_GL000221v1_random 787
chr4 24352983
chr4_GL000008v2_random 5862
chr5 25194075
chr5_GL000208v1_random 3057
chr6 27172565
chr7 24503793
chr8 21140755
chr9 20234746
chr9_KI270717v1_random 506
chr9_KI270718v1_random 458
chr9_KI270719v1_random 4043
chr9_KI270720v1_random 1853
chr10 21626784
chr11 24834339
chr11_KI270721v1_random 1577
chr12 22886973
chr13 12907526
chr14 15295814
chr14_GL000009v2_random 5079
chr14_GL000194v1_random 5561
chr14_GL000225v1_random 15195
chr14_KI270722v1_random 5204
chr14_KI270723v1_random 1457
chr14_KI270724v1_random 687
chr14_KI270725v1_random 3053
chr14_KI270726v1_random 161
chr15 13760746
chr15_KI270727v1_random 1041
chr16 16664699
chr16_KI270728v1_random 5822
chr17 21377342
chr17_GL000205v2_random 30091
chr17_KI270729v1_random 6853
chr17_KI270730v1_random 1880
chr18 11054849
chr19 20370182
chr20 11622969
chr21 5750503
chr22 9093872
chr22_KI270731v1_random 1505
chr22_KI270732v1_random 2147
chr22_KI270733v1_random 90877
chr22_KI270734v1_random 1513
chr22_KI270735v1_random 2884
chr22_KI270736v1_random 5105
chr22_KI270737v1_random 723
chr22_KI270738v1_random 2042
chr22_KI270739v1_random 94
chrM 4312539
chrUn_GL000195v1 18503
chrUn_GL000213v1 526
chrUn_GL000214v1 1405
chrUn_GL000216v2 3780
chrUn_GL000218v1 5710
chrUn_GL000219v1 16060
chrUn_GL000220v1 10272
chrUn_GL000224v1 7953
chrUn_GL000226v1 22
chrUn_KI270302v1 31
chrUn_KI270303v1 22
chrUn_KI270304v1 7
chrUn_KI270305v1 3
chrUn_KI270310v1 42
chrUn_KI270311v1 17
chrUn_KI270316v1 2
chrUn_KI270320v1 28
chrUn_KI270322v1 52
chrUn_KI270330v1 340
chrUn_KI270333v1 101
chrUn_KI270335v1 1
chrUn_KI270336v1 51
chrUn_KI270337v1 152
chrUn_KI270362v1 40
chrUn_KI270363v1 27
chrUn_KI270364v1 2
chrUn_KI270366v1 18
chrUn_KI270371v1 1
chrUn_KI270378v1 5
chrUn_KI270382v1 35
chrUn_KI270384v1 7
chrUn_KI270385v1 2
chrUn_KI270386v1 4
chrUn_KI270387v1 1
chrUn_KI270388v1 2
chrUn_KI270389v1 4
chrUn_KI270390v1 12
chrUn_KI270391v1 11
chrUn_KI270392v1 6
chrUn_KI270393v1 3
chrUn_KI270395v1 2
chrUn_KI270396v1 4
chrUn_KI270411v1 17
chrUn_KI270412v1 12
chrUn_KI270414v1 4
chrUn_KI270417v1 45
chrUn_KI270418v1 35
chrUn_KI270419v1 12
chrUn_KI270420v1 45
chrUn_KI270422v1 55
chrUn_KI270423v1 19
chrUn_KI270424v1 12
chrUn_KI270425v1 10
chrUn_KI270429v1 82
chrUn_KI270435v1 2900
chrUn_KI270438v1 22772
chrUn_KI270442v1 20212
chrUn_KI270448v1 407
chrUn_KI270465v1 102
chrUn_KI270466v1 1507
chrUn_KI270467v1 5892
chrUn_KI270468v1 239
chrUn_KI270507v1 387
chrUn_KI270508v1 192
chrUn_KI270509v1 165
chrUn_KI270510v1 107
chrUn_KI270511v1 278
chrUn_KI270512v1 479
chrUn_KI270515v1 479
chrUn_KI270516v1 92
chrUn_KI270517v1 241
chrUn_KI270518v1 141
chrUn_KI270519v1 4136
chrUn_KI270521v1 190
chrUn_KI270522v1 100
chrUn_KI270528v1 1
chrUn_KI270529v1 14
chrUn_KI270530v1 12
chrUn_KI270538v1 3609
chrUn_KI270539v1 32
chrUn_KI270544v1 21
chrUn_KI270579v1 21
chrUn_KI270580v1 136
chrUn_KI270581v1 6
chrUn_KI270582v1 27
chrUn_KI270583v1 135
chrUn_KI270584v1 364
chrUn_KI270587v1 79
chrUn_KI270588v1 409
chrUn_KI270589v1 444
chrUn_KI270590v1 332
chrUn_KI270591v1 551
chrUn_KI270593v1 119
chrUn_KI270741v1 76
chrUn_KI270742v1 3288
chrUn_KI270743v1 2931
chrUn_KI270744v1 7146
chrUn_KI270745v1 348
chrUn_KI270746v1 3950
chrUn_KI270747v1 490
chrUn_KI270748v1 195
chrUn_KI270749v1 3584
chrUn_KI270750v1 5002
chrUn_KI270751v1 4331
chrUn_KI270753v1 544
chrUn_KI270754v1 949
chrUn_KI270755v1 253
chrUn_KI270756v1 1270
chrUn_KI270757v1 1670
chrX 10713325
chrY 662304
chrY_KI270740v1_random 583

Fragment lengths

fragments min max mean median
fragments 474724244 7 1992 291.27 221
global fragment-length histogram

Files

Filename Size md5
T198_b18_Lung_PCW23.fragments.tsv.gz 4.29 GB b74a9d7ca856e3484a3c6956623e5957
T198_b18_Lung_PCW23.fragments.tsv.gz.tbi 1.59 MB faa20445ca796fdc7f93d7056045fd0e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB efb1cb6728974c7ac7a5537379162503
statistics/