Resource

Id summary/liu2026Multiomics/atac_fragments/T235_b15_Liver_PCW21content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T235_b15_Liver_PCW21 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 15
  • modalities: ATAC
  • organ: Liver
  • pcw_age: 21
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T235_b15_Liver_PCW21
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T235
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL108_E10+A10+C10, CL112_E05+D05+C06, CL110_E05+D05+B03, CL111_E12+D12+H12, CL113_E01+E03+D03 (top 5 of 1105807 values)
count int

count
HISTOGRAM FOR count [1, 56]
n
405,950,146
mean
2.67
sd
2.76

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 405950146
chr1 37989734
chr1_KI270706v1_random 4407
chr1_KI270707v1_random 566
chr1_KI270708v1_random 1558
chr1_KI270709v1_random 3560
chr1_KI270710v1_random 505
chr1_KI270711v1_random 2352
chr1_KI270712v1_random 2096
chr1_KI270713v1_random 26320
chr1_KI270714v1_random 1777
chr2 30631082
chr2_KI270715v1_random 125
chr2_KI270716v1_random 340
chr3 25845734
chr3_GL000221v1_random 780
chr4 19087602
chr4_GL000008v2_random 5336
chr5 21029789
chr5_GL000208v1_random 1855
chr6 23067998
chr7 20600990
chr8 17066592
chr9 16813756
chr9_KI270717v1_random 242
chr9_KI270718v1_random 337
chr9_KI270719v1_random 3589
chr9_KI270720v1_random 1358
chr10 17575405
chr11 20991595
chr11_KI270721v1_random 1562
chr12 19445534
chr13 9741778
chr14 13260019
chr14_GL000009v2_random 5191
chr14_GL000194v1_random 7342
chr14_GL000225v1_random 22264
chr14_KI270722v1_random 5281
chr14_KI270723v1_random 1109
chr14_KI270724v1_random 1192
chr14_KI270725v1_random 2979
chr14_KI270726v1_random 785
chr15 11732451
chr15_KI270727v1_random 1139
chr16 14663589
chr16_KI270728v1_random 8678
chr17 18141637
chr17_GL000205v2_random 43063
chr17_KI270729v1_random 6690
chr17_KI270730v1_random 1717
chr18 8034392
chr19 19263687
chr20 10002497
chr21 4393590
chr22 8370477
chr22_KI270731v1_random 659
chr22_KI270732v1_random 1789
chr22_KI270733v1_random 87272
chr22_KI270734v1_random 1431
chr22_KI270735v1_random 2733
chr22_KI270736v1_random 2744
chr22_KI270737v1_random 759
chr22_KI270738v1_random 1987
chr22_KI270739v1_random 26
chrM 6250582
chrUn_GL000195v1 42423
chrUn_GL000213v1 183
chrUn_GL000214v1 1493
chrUn_GL000216v2 7441
chrUn_GL000218v1 4230
chrUn_GL000219v1 11691
chrUn_GL000220v1 13748
chrUn_GL000224v1 6828
chrUn_GL000226v1 2
chrUn_KI270302v1 17
chrUn_KI270303v1 16
chrUn_KI270304v1 7
chrUn_KI270305v1 13
chrUn_KI270310v1 38
chrUn_KI270311v1 23
chrUn_KI270312v1 6
chrUn_KI270315v1 4
chrUn_KI270316v1 10
chrUn_KI270317v1 13
chrUn_KI270320v1 52
chrUn_KI270322v1 37
chrUn_KI270329v1 1
chrUn_KI270330v1 380
chrUn_KI270333v1 346
chrUn_KI270336v1 144
chrUn_KI270337v1 349
chrUn_KI270362v1 33
chrUn_KI270363v1 21
chrUn_KI270364v1 1
chrUn_KI270366v1 17
chrUn_KI270378v1 3
chrUn_KI270382v1 6
chrUn_KI270383v1 1
chrUn_KI270384v1 1
chrUn_KI270385v1 3
chrUn_KI270386v1 3
chrUn_KI270388v1 7
chrUn_KI270389v1 2
chrUn_KI270391v1 1
chrUn_KI270392v1 1
chrUn_KI270393v1 21
chrUn_KI270394v1 2
chrUn_KI270395v1 3
chrUn_KI270396v1 1
chrUn_KI270411v1 15
chrUn_KI270412v1 12
chrUn_KI270414v1 2
chrUn_KI270417v1 43
chrUn_KI270418v1 15
chrUn_KI270419v1 8
chrUn_KI270420v1 49
chrUn_KI270422v1 4
chrUn_KI270423v1 2
chrUn_KI270424v1 10
chrUn_KI270425v1 1
chrUn_KI270429v1 48
chrUn_KI270435v1 2147
chrUn_KI270438v1 18994
chrUn_KI270442v1 19632
chrUn_KI270448v1 358
chrUn_KI270465v1 25
chrUn_KI270466v1 1998
chrUn_KI270467v1 6705
chrUn_KI270468v1 196
chrUn_KI270507v1 307
chrUn_KI270508v1 143
chrUn_KI270509v1 151
chrUn_KI270510v1 93
chrUn_KI270511v1 245
chrUn_KI270512v1 568
chrUn_KI270515v1 354
chrUn_KI270516v1 64
chrUn_KI270517v1 240
chrUn_KI270518v1 107
chrUn_KI270519v1 4506
chrUn_KI270521v1 163
chrUn_KI270522v1 89
chrUn_KI270528v1 2
chrUn_KI270529v1 2
chrUn_KI270530v1 13
chrUn_KI270538v1 2500
chrUn_KI270539v1 38
chrUn_KI270544v1 13
chrUn_KI270579v1 16
chrUn_KI270580v1 136
chrUn_KI270581v1 12
chrUn_KI270582v1 52
chrUn_KI270583v1 126
chrUn_KI270584v1 305
chrUn_KI270587v1 465
chrUn_KI270588v1 317
chrUn_KI270589v1 412
chrUn_KI270590v1 285
chrUn_KI270591v1 447
chrUn_KI270593v1 130
chrUn_KI270741v1 80
chrUn_KI270742v1 3404
chrUn_KI270743v1 1758
chrUn_KI270744v1 8621
chrUn_KI270745v1 426
chrUn_KI270746v1 3699
chrUn_KI270747v1 383
chrUn_KI270748v1 253
chrUn_KI270749v1 2998
chrUn_KI270750v1 4475
chrUn_KI270751v1 4472
chrUn_KI270752v1 17
chrUn_KI270753v1 451
chrUn_KI270754v1 978
chrUn_KI270755v1 144
chrUn_KI270756v1 1158
chrUn_KI270757v1 1451
chrX 11433031
chrY 64137
chrY_KI270740v1_random 18

Fragment lengths

fragments min max mean median
fragments 405950146 7 1992 190.99 123
global fragment-length histogram

Files

Filename Size md5
T235_b15_Liver_PCW21.fragments.tsv.gz 3.48 GB 1e691aae67623267e6a2d89fa7cdd3b1
T235_b15_Liver_PCW21.fragments.tsv.gz.tbi 1.42 MB 4ae90e8d9a1300af6dd5f202c825cabe
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 85687b7ba1fce9611fb05806e9111b4a
statistics/