Resource

Id summary/liu2026Multiomics/atac_fragments/T238_b10_Stomach_PCW21content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T238_b10_Stomach_PCW21 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 10
  • modalities: ATAC
  • organ: Stomach
  • pcw_age: 21
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T238_b10_Stomach_PCW21
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T238
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL66_E05+H02+E10, CL71_E09+D09+F11, CL68_E01+D05+D08, CL66_E12+H06+E01, CL70_E04+B10+C06 (top 5 of 884732 values)
count int

count
HISTOGRAM FOR count [1, 36]
n
410,914,581
mean
1.41
sd
0.763

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 410914581
chr1 34215756
chr1_KI270706v1_random 6650
chr1_KI270707v1_random 1129
chr1_KI270708v1_random 2999
chr1_KI270709v1_random 7697
chr1_KI270710v1_random 1161
chr1_KI270711v1_random 2496
chr1_KI270712v1_random 3145
chr1_KI270713v1_random 14460
chr1_KI270714v1_random 1951
chr2 32253344
chr2_KI270715v1_random 346
chr2_KI270716v1_random 879
chr3 26941991
chr3_GL000221v1_random 1101
chr4 23908290
chr4_GL000008v2_random 9429
chr5 23404566
chr5_GL000208v1_random 5076
chr6 23491561
chr7 21573581
chr8 19225386
chr9 16986126
chr9_KI270717v1_random 331
chr9_KI270718v1_random 506
chr9_KI270719v1_random 7565
chr9_KI270720v1_random 3052
chr10 18294899
chr11 20697161
chr11_KI270721v1_random 769
chr12 19594126
chr13 12109978
chr14 13052814
chr14_GL000009v2_random 10426
chr14_GL000194v1_random 8239
chr14_GL000225v1_random 31529
chr14_KI270722v1_random 11167
chr14_KI270723v1_random 1689
chr14_KI270724v1_random 2050
chr14_KI270725v1_random 6356
chr14_KI270726v1_random 1599
chr15 11331908
chr15_KI270727v1_random 1796
chr16 13007435
chr16_KI270728v1_random 16332
chr17 15135753
chr17_GL000205v2_random 36932
chr17_KI270729v1_random 17285
chr17_KI270730v1_random 3526
chr18 9795873
chr19 13529374
chr20 9502578
chr21 5027838
chr22 6670522
chr22_KI270731v1_random 489
chr22_KI270732v1_random 3771
chr22_KI270733v1_random 40534
chr22_KI270734v1_random 983
chr22_KI270735v1_random 6223
chr22_KI270736v1_random 4108
chr22_KI270737v1_random 1757
chr22_KI270738v1_random 5337
chr22_KI270739v1_random 40
chrM 6597146
chrUn_GL000195v1 20949
chrUn_GL000213v1 373
chrUn_GL000214v1 2030
chrUn_GL000216v2 12487
chrUn_GL000218v1 6344
chrUn_GL000219v1 9132
chrUn_GL000220v1 8177
chrUn_GL000224v1 10685
chrUn_GL000226v1 7
chrUn_KI270302v1 24
chrUn_KI270303v1 39
chrUn_KI270304v1 10
chrUn_KI270305v1 26
chrUn_KI270310v1 56
chrUn_KI270311v1 77
chrUn_KI270312v1 5
chrUn_KI270315v1 11
chrUn_KI270316v1 9
chrUn_KI270317v1 25
chrUn_KI270320v1 141
chrUn_KI270322v1 90
chrUn_KI270330v1 409
chrUn_KI270333v1 628
chrUn_KI270336v1 254
chrUn_KI270337v1 476
chrUn_KI270362v1 69
chrUn_KI270363v1 52
chrUn_KI270364v1 2
chrUn_KI270366v1 44
chrUn_KI270378v1 7
chrUn_KI270381v1 3
chrUn_KI270382v1 11
chrUn_KI270383v1 17
chrUn_KI270384v1 16
chrUn_KI270385v1 8
chrUn_KI270386v1 1
chrUn_KI270388v1 11
chrUn_KI270392v1 8
chrUn_KI270393v1 42
chrUn_KI270394v1 6
chrUn_KI270395v1 12
chrUn_KI270396v1 10
chrUn_KI270411v1 25
chrUn_KI270412v1 22
chrUn_KI270414v1 7
chrUn_KI270417v1 141
chrUn_KI270418v1 70
chrUn_KI270419v1 32
chrUn_KI270420v1 103
chrUn_KI270422v1 7
chrUn_KI270423v1 5
chrUn_KI270424v1 13
chrUn_KI270425v1 5
chrUn_KI270429v1 78
chrUn_KI270435v1 5769
chrUn_KI270438v1 44185
chrUn_KI270442v1 42369
chrUn_KI270448v1 890
chrUn_KI270465v1 62
chrUn_KI270466v1 3963
chrUn_KI270467v1 13041
chrUn_KI270468v1 499
chrUn_KI270507v1 889
chrUn_KI270508v1 368
chrUn_KI270509v1 385
chrUn_KI270510v1 232
chrUn_KI270511v1 720
chrUn_KI270512v1 1367
chrUn_KI270515v1 1063
chrUn_KI270516v1 181
chrUn_KI270517v1 547
chrUn_KI270518v1 297
chrUn_KI270519v1 12660
chrUn_KI270521v1 368
chrUn_KI270522v1 226
chrUn_KI270528v1 4
chrUn_KI270529v1 24
chrUn_KI270530v1 34
chrUn_KI270538v1 6758
chrUn_KI270539v1 60
chrUn_KI270544v1 34
chrUn_KI270579v1 13
chrUn_KI270580v1 280
chrUn_KI270581v1 13
chrUn_KI270582v1 79
chrUn_KI270583v1 278
chrUn_KI270584v1 766
chrUn_KI270587v1 1276
chrUn_KI270588v1 945
chrUn_KI270589v1 777
chrUn_KI270590v1 674
chrUn_KI270591v1 1082
chrUn_KI270593v1 296
chrUn_KI270741v1 127
chrUn_KI270742v1 5368
chrUn_KI270743v1 2802
chrUn_KI270744v1 12294
chrUn_KI270745v1 375
chrUn_KI270746v1 8289
chrUn_KI270747v1 611
chrUn_KI270748v1 194
chrUn_KI270749v1 6513
chrUn_KI270750v1 10156
chrUn_KI270751v1 8910
chrUn_KI270753v1 680
chrUn_KI270754v1 1274
chrUn_KI270755v1 225
chrUn_KI270756v1 2629
chrUn_KI270757v1 3618
chrX 13918994
chrY 83789
chrY_KI270740v1_random 52

Fragment lengths

fragments min max mean median
fragments 410914581 7 1992 286.76 219
global fragment-length histogram

Files

Filename Size md5
T238_b10_Stomach_PCW21.fragments.tsv.gz 3.91 GB 2297f5ed2ee7aee94ca68acda900e437
T238_b10_Stomach_PCW21.fragments.tsv.gz.tbi 1.42 MB 2614f2dde3923547e213dd96ee105067
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.45 KB f2ad3ada6378bbdd8d63f8bead965713
statistics/