Resource

Id summary/liu2026Multiomics/atac_fragments/T23_b17_Thymus_PCW17content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T23_b17_Thymus_PCW17 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 17
  • modalities: ATAC
  • organ: Thymus
  • pcw_age: 17
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T23_b17_Thymus_PCW17
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T23
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL121_E05+H10+G12, CL127_E02+H11+G12, CL127_E07+A07+D12, CL122_E04+B09+F11, CL123_E08+C07+H07 (top 5 of 1768713 values)
count int

count
HISTOGRAM FOR count [1, 30]
n
841,563,359
mean
2.09
sd
1.65

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 841563359
chr1 75572839
chr1_KI270706v1_random 8082
chr1_KI270707v1_random 1122
chr1_KI270708v1_random 2936
chr1_KI270709v1_random 6795
chr1_KI270710v1_random 974
chr1_KI270711v1_random 3513
chr1_KI270712v1_random 3848
chr1_KI270713v1_random 33176
chr1_KI270714v1_random 5032
chr2 66370338
chr2_KI270715v1_random 250
chr2_KI270716v1_random 592
chr3 53357024
chr3_GL000221v1_random 1243
chr4 39660112
chr4_GL000008v2_random 8029
chr5 43546681
chr5_GL000208v1_random 3821
chr6 47365219
chr7 42068964
chr8 35359402
chr9 34803421
chr9_KI270717v1_random 516
chr9_KI270718v1_random 659
chr9_KI270719v1_random 6930
chr9_KI270720v1_random 2906
chr10 38513897
chr11 41507974
chr11_KI270721v1_random 2282
chr12 41545648
chr13 21960687
chr14 27897300
chr14_GL000009v2_random 9699
chr14_GL000194v1_random 8496
chr14_GL000225v1_random 34065
chr14_KI270722v1_random 10376
chr14_KI270723v1_random 3049
chr14_KI270724v1_random 2432
chr14_KI270725v1_random 5836
chr14_KI270726v1_random 12574
chr15 25761439
chr15_KI270727v1_random 1582
chr16 31116921
chr16_KI270728v1_random 3700
chr17 38942072
chr17_GL000205v2_random 83946
chr17_KI270729v1_random 10955
chr17_KI270730v1_random 2739
chr18 17304951
chr19 36610379
chr20 21279418
chr21 10330313
chr22 17477403
chr22_KI270731v1_random 916
chr22_KI270732v1_random 3517
chr22_KI270733v1_random 82882
chr22_KI270734v1_random 1945
chr22_KI270735v1_random 5207
chr22_KI270736v1_random 9049
chr22_KI270737v1_random 1220
chr22_KI270738v1_random 3625
chr22_KI270739v1_random 34
chrM 6883756
chrUn_GL000195v1 64176
chrUn_GL000213v1 296
chrUn_GL000214v1 2611
chrUn_GL000216v2 11495
chrUn_GL000218v1 6366
chrUn_GL000219v1 50889
chrUn_GL000220v1 17928
chrUn_GL000224v1 14066
chrUn_GL000226v1 7
chrUn_KI270302v1 47
chrUn_KI270303v1 53
chrUn_KI270304v1 76
chrUn_KI270305v1 19
chrUn_KI270310v1 195
chrUn_KI270311v1 71
chrUn_KI270312v1 2
chrUn_KI270315v1 5
chrUn_KI270316v1 6
chrUn_KI270317v1 9
chrUn_KI270320v1 114
chrUn_KI270322v1 102
chrUn_KI270330v1 510
chrUn_KI270333v1 248
chrUn_KI270336v1 164
chrUn_KI270337v1 403
chrUn_KI270362v1 43
chrUn_KI270363v1 51
chrUn_KI270364v1 1
chrUn_KI270366v1 40
chrUn_KI270371v1 1
chrUn_KI270374v1 2
chrUn_KI270378v1 3
chrUn_KI270382v1 24
chrUn_KI270383v1 5
chrUn_KI270384v1 9
chrUn_KI270385v1 13
chrUn_KI270386v1 3
chrUn_KI270388v1 4
chrUn_KI270389v1 1
chrUn_KI270390v1 5
chrUn_KI270391v1 3
chrUn_KI270392v1 1
chrUn_KI270393v1 11
chrUn_KI270394v1 2
chrUn_KI270395v1 10
chrUn_KI270396v1 4
chrUn_KI270411v1 36
chrUn_KI270412v1 8
chrUn_KI270414v1 20
chrUn_KI270417v1 91
chrUn_KI270418v1 54
chrUn_KI270419v1 7
chrUn_KI270420v1 76
chrUn_KI270422v1 29
chrUn_KI270423v1 5
chrUn_KI270424v1 9
chrUn_KI270425v1 1
chrUn_KI270429v1 340
chrUn_KI270435v1 4340
chrUn_KI270438v1 58237
chrUn_KI270442v1 33689
chrUn_KI270448v1 630
chrUn_KI270465v1 42
chrUn_KI270466v1 3812
chrUn_KI270467v1 10882
chrUn_KI270468v1 332
chrUn_KI270507v1 584
chrUn_KI270508v1 334
chrUn_KI270509v1 252
chrUn_KI270510v1 190
chrUn_KI270511v1 470
chrUn_KI270512v1 879
chrUn_KI270515v1 666
chrUn_KI270516v1 140
chrUn_KI270517v1 392
chrUn_KI270518v1 210
chrUn_KI270519v1 6927
chrUn_KI270521v1 285
chrUn_KI270522v1 144
chrUn_KI270528v1 8
chrUn_KI270529v1 15
chrUn_KI270530v1 19
chrUn_KI270538v1 5587
chrUn_KI270539v1 43
chrUn_KI270544v1 33
chrUn_KI270579v1 42
chrUn_KI270580v1 200
chrUn_KI270581v1 15
chrUn_KI270582v1 66
chrUn_KI270583v1 209
chrUn_KI270584v1 546
chrUn_KI270587v1 72
chrUn_KI270588v1 610
chrUn_KI270589v1 711
chrUn_KI270590v1 488
chrUn_KI270591v1 867
chrUn_KI270593v1 221
chrUn_KI270741v1 266
chrUn_KI270742v1 5699
chrUn_KI270743v1 4056
chrUn_KI270744v1 14365
chrUn_KI270745v1 768
chrUn_KI270746v1 6272
chrUn_KI270747v1 673
chrUn_KI270748v1 373
chrUn_KI270749v1 6044
chrUn_KI270750v1 8625
chrUn_KI270751v1 8380
chrUn_KI270753v1 938
chrUn_KI270754v1 1138
chrUn_KI270755v1 478
chrUn_KI270756v1 874
chrUn_KI270757v1 2796
chrX 25472060
chrY 98830
chrY_KI270740v1_random 57

Fragment lengths

fragments min max mean median
fragments 841563359 7 1992 254.41 183
global fragment-length histogram

Files

Filename Size md5
T23_b17_Thymus_PCW17.fragments.tsv.gz 7.5 GB d42c839447aa93b42bc320ea8a9ec8fe
T23_b17_Thymus_PCW17.fragments.tsv.gz.tbi 2.03 MB 8d3c46f75ff438053a0bf364d9742740
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 637aaf8b8149d29adedb9eb9c8ab4674
statistics/