Resource

Id summary/liu2026Multiomics/atac_fragments/T269_b10_Stomach_PCW18content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T269_b10_Stomach_PCW18 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 10
  • modalities: ATAC
  • organ: Stomach
  • pcw_age: 18
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T269_b10_Stomach_PCW18
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T269
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL70_C04+C07+C12, CL70_C02+D03+G04, CL65_C06+E07+F03, CL72_C10+F12+G06, CL65_C05+C07+H02 (top 5 of 884735 values)
count int

count
HISTOGRAM FOR count [1, 28]
n
442,709,285
mean
1.41
sd
0.769

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 442709285
chr1 38250214
chr1_KI270706v1_random 6275
chr1_KI270707v1_random 1026
chr1_KI270708v1_random 2719
chr1_KI270709v1_random 7233
chr1_KI270710v1_random 1076
chr1_KI270711v1_random 1584
chr1_KI270712v1_random 2253
chr1_KI270713v1_random 11939
chr1_KI270714v1_random 2186
chr2 35103660
chr2_KI270715v1_random 508
chr2_KI270716v1_random 817
chr3 29209773
chr3_GL000221v1_random 1144
chr4 25293480
chr4_GL000008v2_random 8423
chr5 25046170
chr5_GL000208v1_random 4543
chr6 25602929
chr7 23305943
chr8 20305250
chr9 18444521
chr9_KI270717v1_random 254
chr9_KI270718v1_random 433
chr9_KI270719v1_random 5995
chr9_KI270720v1_random 2754
chr10 19758055
chr11 22573718
chr11_KI270721v1_random 1523
chr12 21230324
chr13 12808843
chr14 14129898
chr14_GL000009v2_random 8011
chr14_GL000194v1_random 7143
chr14_GL000225v1_random 25405
chr14_KI270722v1_random 10053
chr14_KI270723v1_random 2310
chr14_KI270724v1_random 1959
chr14_KI270725v1_random 5049
chr14_KI270726v1_random 199
chr15 12471414
chr15_KI270727v1_random 1224
chr16 14423903
chr16_KI270728v1_random 9142
chr17 17273754
chr17_GL000205v2_random 37211
chr17_KI270729v1_random 14206
chr17_KI270730v1_random 3074
chr18 10146821
chr19 15908654
chr20 10392411
chr21 5344667
chr22 7734099
chr22_KI270731v1_random 859
chr22_KI270732v1_random 3512
chr22_KI270733v1_random 63730
chr22_KI270734v1_random 1183
chr22_KI270735v1_random 5405
chr22_KI270736v1_random 8107
chr22_KI270737v1_random 1350
chr22_KI270738v1_random 3786
chr22_KI270739v1_random 45
chrM 6065423
chrUn_GL000195v1 25791
chrUn_GL000213v1 83
chrUn_GL000214v1 1715
chrUn_GL000216v2 11592
chrUn_GL000218v1 7476
chrUn_GL000219v1 20837
chrUn_GL000220v1 10581
chrUn_GL000224v1 13088
chrUn_GL000226v1 7
chrUn_KI270302v1 21
chrUn_KI270303v1 11
chrUn_KI270304v1 12
chrUn_KI270305v1 12
chrUn_KI270310v1 39
chrUn_KI270311v1 84
chrUn_KI270312v1 4
chrUn_KI270315v1 3
chrUn_KI270316v1 3
chrUn_KI270317v1 11
chrUn_KI270320v1 119
chrUn_KI270322v1 71
chrUn_KI270330v1 580
chrUn_KI270333v1 393
chrUn_KI270335v1 1
chrUn_KI270336v1 165
chrUn_KI270337v1 489
chrUn_KI270362v1 56
chrUn_KI270363v1 55
chrUn_KI270364v1 1
chrUn_KI270366v1 38
chrUn_KI270371v1 1
chrUn_KI270373v1 1
chrUn_KI270378v1 7
chrUn_KI270382v1 15
chrUn_KI270383v1 5
chrUn_KI270384v1 12
chrUn_KI270385v1 4
chrUn_KI270386v1 17
chrUn_KI270388v1 9
chrUn_KI270390v1 2
chrUn_KI270391v1 4
chrUn_KI270392v1 11
chrUn_KI270393v1 24
chrUn_KI270394v1 7
chrUn_KI270395v1 31
chrUn_KI270396v1 5
chrUn_KI270411v1 24
chrUn_KI270412v1 11
chrUn_KI270414v1 3
chrUn_KI270417v1 143
chrUn_KI270418v1 50
chrUn_KI270419v1 9
chrUn_KI270420v1 91
chrUn_KI270422v1 59
chrUn_KI270423v1 22
chrUn_KI270424v1 5
chrUn_KI270425v1 5
chrUn_KI270429v1 210
chrUn_KI270435v1 5507
chrUn_KI270438v1 43432
chrUn_KI270442v1 32163
chrUn_KI270448v1 680
chrUn_KI270465v1 76
chrUn_KI270466v1 6068
chrUn_KI270467v1 16613
chrUn_KI270468v1 437
chrUn_KI270507v1 716
chrUn_KI270508v1 286
chrUn_KI270509v1 312
chrUn_KI270510v1 207
chrUn_KI270511v1 630
chrUn_KI270512v1 845
chrUn_KI270515v1 928
chrUn_KI270516v1 142
chrUn_KI270517v1 447
chrUn_KI270518v1 243
chrUn_KI270519v1 7356
chrUn_KI270521v1 349
chrUn_KI270522v1 144
chrUn_KI270528v1 4
chrUn_KI270529v1 18
chrUn_KI270530v1 18
chrUn_KI270538v1 5747
chrUn_KI270539v1 92
chrUn_KI270544v1 18
chrUn_KI270579v1 22
chrUn_KI270580v1 234
chrUn_KI270581v1 5
chrUn_KI270582v1 53
chrUn_KI270583v1 216
chrUn_KI270584v1 661
chrUn_KI270587v1 87
chrUn_KI270588v1 693
chrUn_KI270589v1 683
chrUn_KI270590v1 558
chrUn_KI270591v1 947
chrUn_KI270593v1 289
chrUn_KI270741v1 280
chrUn_KI270742v1 5441
chrUn_KI270743v1 3640
chrUn_KI270744v1 9487
chrUn_KI270745v1 559
chrUn_KI270746v1 5792
chrUn_KI270747v1 618
chrUn_KI270748v1 450
chrUn_KI270749v1 6550
chrUn_KI270750v1 8584
chrUn_KI270751v1 6643
chrUn_KI270753v1 864
chrUn_KI270754v1 1439
chrUn_KI270755v1 454
chrUn_KI270756v1 2017
chrUn_KI270757v1 3088
chrX 10568809
chrY 762421
chrY_KI270740v1_random 526

Fragment lengths

fragments min max mean median
fragments 442709285 7 1992 279.81 211
global fragment-length histogram

Files

Filename Size md5
T269_b10_Stomach_PCW18.fragments.tsv.gz 4.18 GB decaff816bc0647b5c5efeeb858e812c
T269_b10_Stomach_PCW18.fragments.tsv.gz.tbi 1.49 MB dc4eb88b88ed2d5efb82e2f629ab15d8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.45 KB 13ccfe913db3fb032f3e2e3fb3eb6fa2
statistics/