Resource

Id summary/liu2026Multiomics/atac_fragments/T270_b17_Spleen_PCW18content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T270_b17_Spleen_PCW18 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 17
  • modalities: ATAC
  • organ: Spleen
  • pcw_age: 18
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T270_b17_Spleen_PCW18
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T270
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL124_B08+C02+A01, CL130_B09+C02+B02, CL118_B03+F08+B08, CL119_B11+B02+D01, CL124_B05+F10+D12 (top 5 of 1766163 values)
count int

count
HISTOGRAM FOR count [1, 43]
n
637,972,956
mean
2
sd
1.61

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 637972956
chr1 55670365
chr1_KI270706v1_random 7523
chr1_KI270707v1_random 1132
chr1_KI270708v1_random 3029
chr1_KI270709v1_random 6993
chr1_KI270710v1_random 1114
chr1_KI270711v1_random 2474
chr1_KI270712v1_random 2787
chr1_KI270713v1_random 16698
chr1_KI270714v1_random 2673
chr2 49961008
chr2_KI270715v1_random 455
chr2_KI270716v1_random 780
chr3 41091142
chr3_GL000221v1_random 1390
chr4 32937486
chr4_GL000008v2_random 9677
chr5 34550465
chr5_GL000208v1_random 4734
chr6 36159382
chr7 32439172
chr8 28470933
chr9 26598908
chr9_KI270717v1_random 445
chr9_KI270718v1_random 806
chr9_KI270719v1_random 7305
chr9_KI270720v1_random 3158
chr10 29833731
chr11 32834688
chr11_KI270721v1_random 2682
chr12 30809778
chr13 17508534
chr14 20839955
chr14_GL000009v2_random 9808
chr14_GL000194v1_random 9594
chr14_GL000225v1_random 30514
chr14_KI270722v1_random 11152
chr14_KI270723v1_random 3019
chr14_KI270724v1_random 2475
chr14_KI270725v1_random 5777
chr14_KI270726v1_random 612
chr15 19322127
chr15_KI270727v1_random 1661
chr16 22081178
chr16_KI270728v1_random 10333
chr17 27786427
chr17_GL000205v2_random 51233
chr17_KI270729v1_random 12014
chr17_KI270730v1_random 3051
chr18 14339411
chr19 26276738
chr20 16310610
chr21 7638011
chr22 12508999
chr22_KI270731v1_random 1205
chr22_KI270732v1_random 3824
chr22_KI270733v1_random 107382
chr22_KI270734v1_random 1666
chr22_KI270735v1_random 5814
chr22_KI270736v1_random 9154
chr22_KI270737v1_random 1356
chr22_KI270738v1_random 3823
chr22_KI270739v1_random 46
chrM 5987514
chrUn_GL000195v1 39368
chrUn_GL000213v1 92
chrUn_GL000214v1 2580
chrUn_GL000216v2 11423
chrUn_GL000218v1 9261
chrUn_GL000219v1 40050
chrUn_GL000220v1 14514
chrUn_GL000224v1 17562
chrUn_GL000226v1 7
chrUn_KI270302v1 8
chrUn_KI270303v1 10
chrUn_KI270304v1 10
chrUn_KI270305v1 18
chrUn_KI270310v1 47
chrUn_KI270311v1 68
chrUn_KI270312v1 2
chrUn_KI270315v1 6
chrUn_KI270316v1 4
chrUn_KI270317v1 17
chrUn_KI270320v1 101
chrUn_KI270322v1 75
chrUn_KI270330v1 723
chrUn_KI270333v1 247
chrUn_KI270335v1 1
chrUn_KI270336v1 103
chrUn_KI270337v1 355
chrUn_KI270362v1 48
chrUn_KI270363v1 53
chrUn_KI270364v1 1
chrUn_KI270366v1 29
chrUn_KI270374v1 2
chrUn_KI270378v1 11
chrUn_KI270382v1 17
chrUn_KI270383v1 5
chrUn_KI270384v1 13
chrUn_KI270385v1 6
chrUn_KI270386v1 15
chrUn_KI270388v1 12
chrUn_KI270390v1 4
chrUn_KI270391v1 2
chrUn_KI270392v1 6
chrUn_KI270393v1 22
chrUn_KI270394v1 8
chrUn_KI270395v1 33
chrUn_KI270396v1 3
chrUn_KI270411v1 28
chrUn_KI270412v1 9
chrUn_KI270414v1 7
chrUn_KI270417v1 139
chrUn_KI270418v1 50
chrUn_KI270419v1 6
chrUn_KI270420v1 77
chrUn_KI270422v1 82
chrUn_KI270423v1 19
chrUn_KI270424v1 8
chrUn_KI270425v1 4
chrUn_KI270429v1 217
chrUn_KI270435v1 5283
chrUn_KI270438v1 36095
chrUn_KI270442v1 34896
chrUn_KI270448v1 631
chrUn_KI270465v1 60
chrUn_KI270466v1 4491
chrUn_KI270467v1 12795
chrUn_KI270468v1 394
chrUn_KI270507v1 687
chrUn_KI270508v1 364
chrUn_KI270509v1 309
chrUn_KI270510v1 192
chrUn_KI270511v1 579
chrUn_KI270512v1 788
chrUn_KI270515v1 858
chrUn_KI270516v1 161
chrUn_KI270517v1 469
chrUn_KI270518v1 238
chrUn_KI270519v1 7174
chrUn_KI270521v1 390
chrUn_KI270522v1 178
chrUn_KI270528v1 3
chrUn_KI270529v1 11
chrUn_KI270530v1 23
chrUn_KI270538v1 5992
chrUn_KI270539v1 123
chrUn_KI270544v1 19
chrUn_KI270579v1 30
chrUn_KI270580v1 249
chrUn_KI270581v1 9
chrUn_KI270582v1 80
chrUn_KI270583v1 237
chrUn_KI270584v1 644
chrUn_KI270587v1 84
chrUn_KI270588v1 697
chrUn_KI270589v1 883
chrUn_KI270590v1 607
chrUn_KI270591v1 994
chrUn_KI270593v1 244
chrUn_KI270741v1 316
chrUn_KI270742v1 6976
chrUn_KI270743v1 4566
chrUn_KI270744v1 13627
chrUn_KI270745v1 794
chrUn_KI270746v1 6109
chrUn_KI270747v1 714
chrUn_KI270748v1 659
chrUn_KI270749v1 7200
chrUn_KI270750v1 9138
chrUn_KI270751v1 6950
chrUn_KI270753v1 1111
chrUn_KI270754v1 2000
chrUn_KI270755v1 708
chrUn_KI270756v1 1550
chrUn_KI270757v1 3236
chrX 14408761
chrY 924373
chrY_KI270740v1_random 689

Fragment lengths

fragments min max mean median
fragments 637972956 7 1992 261.12 191
global fragment-length histogram

Files

Filename Size md5
T270_b17_Spleen_PCW18.fragments.tsv.gz 5.84 GB f6e713330e1d5567cce4d8af0774b0e4
T270_b17_Spleen_PCW18.fragments.tsv.gz.tbi 1.78 MB 9124edf2b4d66d09c7bf475726dcfcfa
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.45 KB c6dd14751f48a56ecb6f679d28452a6b
statistics/