Resource

Id summary/liu2026Multiomics/atac_fragments/T273_b16_Adr_PCW18content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T273_b16_Adr_PCW18 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 16
  • modalities: ATAC
  • organ: Adr
  • pcw_age: 18
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T273_b16_Adr_PCW18
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T273
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL131_C01+A12+A11, CL131_C01+D11+A11, CL132_C02+C12+A11, CL131_C01+A12+H12, CL131_C07+A08+C10 (top 5 of 195706 values)
count int

count
HISTOGRAM FOR count [1, 194]
n
18,314,660
mean
6.37
sd
8.04

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 18314660
chr1 1622822
chr1_KI270706v1_random 183
chr1_KI270707v1_random 16
chr1_KI270708v1_random 59
chr1_KI270709v1_random 144
chr1_KI270710v1_random 14
chr1_KI270711v1_random 112
chr1_KI270712v1_random 63
chr1_KI270713v1_random 763
chr1_KI270714v1_random 70
chr2 1422105
chr2_KI270715v1_random 12
chr2_KI270716v1_random 3
chr3 1172441
chr3_GL000221v1_random 30
chr4 908542
chr4_GL000008v2_random 187
chr5 971118
chr5_GL000208v1_random 76
chr6 1014810
chr7 927966
chr8 833650
chr9 772528
chr9_KI270717v1_random 22
chr9_KI270718v1_random 13
chr9_KI270719v1_random 136
chr9_KI270720v1_random 56
chr10 836381
chr11 938391
chr11_KI270721v1_random 121
chr12 880405
chr13 497912
chr14 582508
chr14_GL000009v2_random 237
chr14_GL000194v1_random 251
chr14_GL000225v1_random 648
chr14_KI270722v1_random 270
chr14_KI270723v1_random 78
chr14_KI270724v1_random 46
chr14_KI270725v1_random 123
chr14_KI270726v1_random 3
chr15 544061
chr15_KI270727v1_random 55
chr16 639270
chr16_KI270728v1_random 169
chr17 806205
chr17_GL000205v2_random 1321
chr17_KI270729v1_random 232
chr17_KI270730v1_random 58
chr18 405632
chr19 782961
chr20 477706
chr21 205069
chr22 360483
chr22_KI270731v1_random 21
chr22_KI270732v1_random 65
chr22_KI270733v1_random 7704
chr22_KI270734v1_random 82
chr22_KI270735v1_random 110
chr22_KI270736v1_random 208
chr22_KI270737v1_random 23
chr22_KI270738v1_random 67
chr22_KI270739v1_random 1
chrM 259606
chrUn_GL000195v1 1436
chrUn_GL000213v1 2
chrUn_GL000214v1 63
chrUn_GL000216v2 299
chrUn_GL000218v1 193
chrUn_GL000219v1 1209
chrUn_GL000220v1 766
chrUn_GL000224v1 365
chrUn_KI270304v1 1
chrUn_KI270305v1 1
chrUn_KI270311v1 4
chrUn_KI270320v1 5
chrUn_KI270322v1 3
chrUn_KI270330v1 25
chrUn_KI270333v1 3
chrUn_KI270336v1 3
chrUn_KI270337v1 4
chrUn_KI270362v1 1
chrUn_KI270366v1 4
chrUn_KI270382v1 1
chrUn_KI270417v1 1
chrUn_KI270420v1 3
chrUn_KI270422v1 2
chrUn_KI270429v1 1
chrUn_KI270435v1 126
chrUn_KI270438v1 954
chrUn_KI270442v1 723
chrUn_KI270448v1 13
chrUn_KI270465v1 2
chrUn_KI270466v1 105
chrUn_KI270467v1 251
chrUn_KI270468v1 6
chrUn_KI270507v1 14
chrUn_KI270508v1 6
chrUn_KI270509v1 6
chrUn_KI270510v1 5
chrUn_KI270511v1 8
chrUn_KI270512v1 18
chrUn_KI270515v1 15
chrUn_KI270516v1 2
chrUn_KI270517v1 10
chrUn_KI270518v1 4
chrUn_KI270519v1 131
chrUn_KI270521v1 7
chrUn_KI270522v1 2
chrUn_KI270529v1 1
chrUn_KI270538v1 95
chrUn_KI270544v1 3
chrUn_KI270579v1 1
chrUn_KI270580v1 13
chrUn_KI270582v1 4
chrUn_KI270583v1 1
chrUn_KI270584v1 10
chrUn_KI270588v1 12
chrUn_KI270589v1 19
chrUn_KI270590v1 5
chrUn_KI270591v1 21
chrUn_KI270593v1 9
chrUn_KI270741v1 12
chrUn_KI270742v1 152
chrUn_KI270743v1 130
chrUn_KI270744v1 272
chrUn_KI270745v1 18
chrUn_KI270746v1 100
chrUn_KI270747v1 19
chrUn_KI270748v1 40
chrUn_KI270749v1 146
chrUn_KI270750v1 141
chrUn_KI270751v1 135
chrUn_KI270753v1 20
chrUn_KI270754v1 49
chrUn_KI270755v1 38
chrUn_KI270756v1 33
chrUn_KI270757v1 73
chrX 405892
chrY 23964
chrY_KI270740v1_random 5

Fragment lengths

fragments min max mean median
fragments 18314660 7 1992 264.38 193
global fragment-length histogram

Files

Filename Size md5
T273_b16_Adr_PCW18.fragments.tsv.gz 171.29 MB 589983bbdf12ea93310dd5dd1df6c117
T273_b16_Adr_PCW18.fragments.tsv.gz.tbi 559.38 KB 8e1d907ecb178e8f83c5796e9b315985
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB 53a394d7aed84adaaae03fb8b4096928
statistics/