Resource

Id summary/liu2026Multiomics/atac_fragments/T286_b12_Lung_PCW14content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T286_b12_Lung_PCW14 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 12
  • modalities: ATAC
  • organ: Lung
  • pcw_age: 14
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T286_b12_Lung_PCW14
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T286
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL81_A07+B07+B04, CL86_A06+A01+B08, CL84_A06+D06+H06, CL86_A06+A01+A01, CL83_A04+A06+H04 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 14]
n
504,953,086
mean
1.2
sd
0.507

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 504953086
chr1 43475477
chr1_KI270706v1_random 6221
chr1_KI270707v1_random 909
chr1_KI270708v1_random 4439
chr1_KI270709v1_random 5793
chr1_KI270710v1_random 1198
chr1_KI270711v1_random 2018
chr1_KI270712v1_random 2988
chr1_KI270713v1_random 9927
chr1_KI270714v1_random 4288
chr2 40092131
chr2_KI270715v1_random 237
chr2_KI270716v1_random 727
chr3 33106097
chr3_GL000221v1_random 890
chr4 27964126
chr4_GL000008v2_random 11472
chr5 28164538
chr5_GL000208v1_random 3590
chr6 29067459
chr7 26799269
chr8 23025730
chr9 21071729
chr9_KI270717v1_random 277
chr9_KI270718v1_random 547
chr9_KI270719v1_random 5618
chr9_KI270720v1_random 2383
chr10 22689893
chr11 26049408
chr11_KI270721v1_random 1658
chr12 24046412
chr13 14192044
chr14 15967347
chr14_GL000009v2_random 3957
chr14_GL000194v1_random 3790
chr14_GL000225v1_random 16801
chr14_KI270722v1_random 2862
chr14_KI270723v1_random 1555
chr14_KI270724v1_random 2376
chr14_KI270725v1_random 3957
chr14_KI270726v1_random 791
chr15 13936593
chr15_KI270727v1_random 1047
chr16 16677842
chr16_KI270728v1_random 1688
chr17 20333979
chr17_GL000205v2_random 32495
chr17_KI270729v1_random 10865
chr17_KI270730v1_random 2998
chr18 11698951
chr19 19102748
chr20 11930376
chr21 5800457
chr22 8990818
chr22_KI270731v1_random 584
chr22_KI270732v1_random 3062
chr22_KI270733v1_random 54517
chr22_KI270734v1_random 1193
chr22_KI270735v1_random 4197
chr22_KI270736v1_random 12444
chr22_KI270737v1_random 1142
chr22_KI270738v1_random 3327
chr22_KI270739v1_random 139
chrM 4342380
chrUn_GL000195v1 22634
chrUn_GL000213v1 48
chrUn_GL000214v1 1724
chrUn_GL000216v2 13574
chrUn_GL000218v1 10412
chrUn_GL000219v1 14581
chrUn_GL000220v1 9037
chrUn_GL000224v1 10447
chrUn_GL000226v1 13
chrUn_KI270302v1 28
chrUn_KI270303v1 3
chrUn_KI270304v1 7
chrUn_KI270305v1 17
chrUn_KI270310v1 130
chrUn_KI270311v1 48
chrUn_KI270312v1 3
chrUn_KI270315v1 8
chrUn_KI270316v1 3
chrUn_KI270317v1 5
chrUn_KI270320v1 110
chrUn_KI270322v1 87
chrUn_KI270329v1 2
chrUn_KI270330v1 343
chrUn_KI270333v1 434
chrUn_KI270336v1 159
chrUn_KI270337v1 520
chrUn_KI270362v1 45
chrUn_KI270363v1 43
chrUn_KI270364v1 3
chrUn_KI270366v1 37
chrUn_KI270378v1 2
chrUn_KI270382v1 37
chrUn_KI270383v1 2
chrUn_KI270384v1 5
chrUn_KI270385v1 4
chrUn_KI270386v1 6
chrUn_KI270388v1 7
chrUn_KI270389v1 4
chrUn_KI270391v1 6
chrUn_KI270392v1 22
chrUn_KI270393v1 1
chrUn_KI270395v1 5
chrUn_KI270396v1 6
chrUn_KI270411v1 53
chrUn_KI270412v1 18
chrUn_KI270414v1 27
chrUn_KI270417v1 107
chrUn_KI270418v1 25
chrUn_KI270419v1 8
chrUn_KI270420v1 59
chrUn_KI270422v1 59
chrUn_KI270423v1 23
chrUn_KI270424v1 4
chrUn_KI270425v1 2
chrUn_KI270429v1 98
chrUn_KI270435v1 3649
chrUn_KI270438v1 35793
chrUn_KI270442v1 29932
chrUn_KI270448v1 501
chrUn_KI270465v1 54
chrUn_KI270466v1 3342
chrUn_KI270467v1 11779
chrUn_KI270468v1 315
chrUn_KI270507v1 522
chrUn_KI270508v1 243
chrUn_KI270509v1 216
chrUn_KI270510v1 163
chrUn_KI270511v1 406
chrUn_KI270512v1 786
chrUn_KI270515v1 578
chrUn_KI270516v1 112
chrUn_KI270517v1 338
chrUn_KI270518v1 189
chrUn_KI270519v1 6290
chrUn_KI270521v1 256
chrUn_KI270522v1 119
chrUn_KI270528v1 1
chrUn_KI270529v1 10
chrUn_KI270530v1 15
chrUn_KI270538v1 5088
chrUn_KI270539v1 12
chrUn_KI270544v1 18
chrUn_KI270579v1 28
chrUn_KI270580v1 195
chrUn_KI270581v1 6
chrUn_KI270582v1 63
chrUn_KI270583v1 187
chrUn_KI270584v1 478
chrUn_KI270587v1 1084
chrUn_KI270588v1 518
chrUn_KI270589v1 655
chrUn_KI270590v1 355
chrUn_KI270591v1 743
chrUn_KI270593v1 166
chrUn_KI270741v1 127
chrUn_KI270742v1 4562
chrUn_KI270743v1 4953
chrUn_KI270744v1 10169
chrUn_KI270745v1 363
chrUn_KI270746v1 3722
chrUn_KI270747v1 488
chrUn_KI270748v1 98
chrUn_KI270749v1 4225
chrUn_KI270750v1 6695
chrUn_KI270751v1 6796
chrUn_KI270753v1 498
chrUn_KI270754v1 1434
chrUn_KI270755v1 559
chrUn_KI270756v1 2132
chrUn_KI270757v1 2191
chrX 15898026
chrY 58954
chrY_KI270740v1_random 23

Fragment lengths

fragments min max mean median
fragments 504953086 7 1992 248.61 200
global fragment-length histogram

Files

Filename Size md5
T286_b12_Lung_PCW14.fragments.tsv.gz 4.54 GB 880b9ae832095ca2111c2e406cfa090b
T286_b12_Lung_PCW14.fragments.tsv.gz.tbi 1.56 MB c3da5974b87e9a34a76d0130d47c054b
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 09a9c5bc154bb250506d2569942e5b44
statistics/