Resource

Id summary/liu2026Multiomics/atac_fragments/T299_b19_Scalp_PCW21content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T299_b19_Scalp_PCW21 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 19
  • modalities: ATAC
  • organ: Scalp
  • pcw_age: 21
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T299_b19_Scalp_PCW21
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T299
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL142_G11+A02+A04, CL147_G09+G03+G09, CL143_G11+A11+D06, CL142_G05+A05+D04, CL143_H01+B11+E08 (top 5 of 1327103 values)
count int

count
HISTOGRAM FOR count [1, 21]
n
453,398,257
mean
1.25
sd
0.57

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 453398257
chr1 37890050
chr1_KI270706v1_random 9850
chr1_KI270707v1_random 1396
chr1_KI270708v1_random 7226
chr1_KI270709v1_random 11262
chr1_KI270710v1_random 2438
chr1_KI270711v1_random 2460
chr1_KI270712v1_random 4445
chr1_KI270713v1_random 6642
chr1_KI270714v1_random 2357
chr2 37025510
chr2_KI270715v1_random 593
chr2_KI270716v1_random 1155
chr3 30554434
chr3_GL000221v1_random 1376
chr4 27204886
chr4_GL000008v2_random 13837
chr5 26699370
chr5_GL000208v1_random 6171
chr6 26549445
chr7 24442916
chr8 22192604
chr9 18848197
chr9_KI270717v1_random 276
chr9_KI270718v1_random 874
chr9_KI270719v1_random 9788
chr9_KI270720v1_random 3729
chr10 21091603
chr11 22863249
chr11_KI270721v1_random 640
chr12 21635144
chr13 13743029
chr14 14272478
chr14_GL000009v2_random 13067
chr14_GL000194v1_random 9768
chr14_GL000225v1_random 44630
chr14_KI270722v1_random 17265
chr14_KI270723v1_random 4009
chr14_KI270724v1_random 4975
chr14_KI270725v1_random 7657
chr14_KI270726v1_random 3692
chr15 12698443
chr15_KI270727v1_random 1267
chr16 14366642
chr16_KI270728v1_random 30382
chr17 16079501
chr17_GL000205v2_random 43932
chr17_KI270729v1_random 25732
chr17_KI270730v1_random 5640
chr18 11272281
chr19 13378458
chr20 10733078
chr21 5598361
chr22 7389198
chr22_KI270731v1_random 1262
chr22_KI270732v1_random 5389
chr22_KI270733v1_random 100540
chr22_KI270734v1_random 2283
chr22_KI270735v1_random 7830
chr22_KI270736v1_random 13876
chr22_KI270737v1_random 2684
chr22_KI270738v1_random 7958
chr22_KI270739v1_random 156
chrM 3469706
chrUn_GL000195v1 17238
chrUn_GL000213v1 508
chrUn_GL000214v1 4558
chrUn_GL000216v2 29484
chrUn_GL000218v1 12454
chrUn_GL000219v1 32051
chrUn_GL000220v1 9067
chrUn_GL000224v1 23372
chrUn_GL000226v1 6
chrUn_KI270302v1 25
chrUn_KI270303v1 22
chrUn_KI270304v1 18
chrUn_KI270305v1 33
chrUn_KI270310v1 65
chrUn_KI270311v1 62
chrUn_KI270312v1 5
chrUn_KI270315v1 12
chrUn_KI270316v1 17
chrUn_KI270317v1 26
chrUn_KI270320v1 220
chrUn_KI270322v1 157
chrUn_KI270329v1 4
chrUn_KI270330v1 722
chrUn_KI270333v1 540
chrUn_KI270335v1 1
chrUn_KI270336v1 256
chrUn_KI270337v1 542
chrUn_KI270362v1 71
chrUn_KI270363v1 57
chrUn_KI270364v1 1
chrUn_KI270366v1 44
chrUn_KI270371v1 1
chrUn_KI270374v1 2
chrUn_KI270382v1 7
chrUn_KI270383v1 1
chrUn_KI270384v1 3
chrUn_KI270385v1 17
chrUn_KI270386v1 2
chrUn_KI270389v1 1
chrUn_KI270392v1 2
chrUn_KI270393v1 5
chrUn_KI270394v1 1
chrUn_KI270395v1 3
chrUn_KI270411v1 30
chrUn_KI270412v1 16
chrUn_KI270414v1 5
chrUn_KI270417v1 217
chrUn_KI270418v1 62
chrUn_KI270419v1 28
chrUn_KI270420v1 88
chrUn_KI270422v1 40
chrUn_KI270423v1 21
chrUn_KI270424v1 14
chrUn_KI270425v1 4
chrUn_KI270429v1 275
chrUn_KI270435v1 8450
chrUn_KI270438v1 93114
chrUn_KI270442v1 57163
chrUn_KI270448v1 1050
chrUn_KI270465v1 118
chrUn_KI270466v1 4736
chrUn_KI270467v1 13811
chrUn_KI270468v1 652
chrUn_KI270507v1 1066
chrUn_KI270508v1 556
chrUn_KI270509v1 512
chrUn_KI270510v1 321
chrUn_KI270511v1 898
chrUn_KI270512v1 1591
chrUn_KI270515v1 1317
chrUn_KI270516v1 279
chrUn_KI270517v1 709
chrUn_KI270518v1 372
chrUn_KI270519v1 11999
chrUn_KI270521v1 506
chrUn_KI270522v1 256
chrUn_KI270528v1 6
chrUn_KI270529v1 17
chrUn_KI270530v1 31
chrUn_KI270538v1 9016
chrUn_KI270539v1 106
chrUn_KI270544v1 29
chrUn_KI270579v1 59
chrUn_KI270580v1 357
chrUn_KI270581v1 10
chrUn_KI270582v1 102
chrUn_KI270583v1 359
chrUn_KI270584v1 1004
chrUn_KI270587v1 39
chrUn_KI270588v1 1244
chrUn_KI270589v1 1296
chrUn_KI270590v1 967
chrUn_KI270591v1 1548
chrUn_KI270593v1 453
chrUn_KI270741v1 516
chrUn_KI270742v1 8149
chrUn_KI270743v1 9045
chrUn_KI270744v1 18834
chrUn_KI270745v1 811
chrUn_KI270746v1 8185
chrUn_KI270747v1 605
chrUn_KI270748v1 773
chrUn_KI270749v1 7328
chrUn_KI270750v1 12030
chrUn_KI270751v1 11898
chrUn_KI270753v1 868
chrUn_KI270754v1 3432
chrUn_KI270755v1 590
chrUn_KI270756v1 3067
chrUn_KI270757v1 5125
chrX 11507377
chrY 1011186
chrY_KI270740v1_random 744

Fragment lengths

fragments min max mean median
fragments 453398257 7 1992 255.99 194
global fragment-length histogram

Files

Filename Size md5
T299_b19_Scalp_PCW21.fragments.tsv.gz 4.37 GB 9e1b9dfdc4fd0d8bb8e5d147443924aa
T299_b19_Scalp_PCW21.fragments.tsv.gz.tbi 1.39 MB 37e75575f7024e91ed5568042ea8dd4a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 106d59004d791d2363622eb5476cf77e
statistics/