Resource

Id summary/liu2026Multiomics/atac_fragments/T303_b10_Esophagus_PCW21content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T303_b10_Esophagus_PCW21 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 10
  • modalities: ATAC
  • organ: Esophagus
  • pcw_age: 21
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T303_b10_Esophagus_PCW21
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T303
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL65_H08+H08+F03, CL65_H11+C10+H02, CL65_H01+F06+C09, CL66_H11+E10+A02, CL65_H12+B12+D01 (top 5 of 884730 values)
count int

count
HISTOGRAM FOR count [1, 32]
n
348,835,314
mean
1.41
sd
0.765

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 348835314
chr1 29927272
chr1_KI270706v1_random 5148
chr1_KI270707v1_random 714
chr1_KI270708v1_random 3873
chr1_KI270709v1_random 6196
chr1_KI270710v1_random 1360
chr1_KI270711v1_random 1374
chr1_KI270712v1_random 2156
chr1_KI270713v1_random 6965
chr1_KI270714v1_random 1570
chr2 27733310
chr2_KI270715v1_random 402
chr2_KI270716v1_random 667
chr3 23153058
chr3_GL000221v1_random 803
chr4 19862475
chr4_GL000008v2_random 7551
chr5 19469113
chr5_GL000208v1_random 3701
chr6 20384160
chr7 18202400
chr8 16183161
chr9 14568769
chr9_KI270717v1_random 241
chr9_KI270718v1_random 418
chr9_KI270719v1_random 5281
chr9_KI270720v1_random 2126
chr10 15810409
chr11 17817854
chr11_KI270721v1_random 844
chr12 16838267
chr13 10029889
chr14 11345523
chr14_GL000009v2_random 6826
chr14_GL000194v1_random 4374
chr14_GL000225v1_random 17587
chr14_KI270722v1_random 8803
chr14_KI270723v1_random 1667
chr14_KI270724v1_random 2176
chr14_KI270725v1_random 4599
chr14_KI270726v1_random 2155
chr15 9729132
chr15_KI270727v1_random 974
chr16 11298636
chr16_KI270728v1_random 14945
chr17 13871434
chr17_GL000205v2_random 27245
chr17_KI270729v1_random 13106
chr17_KI270730v1_random 2778
chr18 8211031
chr19 12259791
chr20 8232291
chr21 4390465
chr22 6093222
chr22_KI270731v1_random 763
chr22_KI270732v1_random 3027
chr22_KI270733v1_random 85968
chr22_KI270734v1_random 1375
chr22_KI270735v1_random 4335
chr22_KI270736v1_random 6117
chr22_KI270737v1_random 1574
chr22_KI270738v1_random 4329
chr22_KI270739v1_random 100
chrM 3862932
chrUn_GL000195v1 17931
chrUn_GL000213v1 292
chrUn_GL000214v1 1932
chrUn_GL000216v2 13847
chrUn_GL000218v1 5838
chrUn_GL000219v1 22425
chrUn_GL000220v1 6994
chrUn_GL000224v1 11338
chrUn_GL000226v1 7
chrUn_KI270302v1 19
chrUn_KI270303v1 13
chrUn_KI270304v1 10
chrUn_KI270305v1 20
chrUn_KI270310v1 42
chrUn_KI270311v1 30
chrUn_KI270312v1 1
chrUn_KI270315v1 9
chrUn_KI270316v1 6
chrUn_KI270317v1 15
chrUn_KI270320v1 136
chrUn_KI270322v1 96
chrUn_KI270329v1 4
chrUn_KI270330v1 365
chrUn_KI270333v1 313
chrUn_KI270336v1 134
chrUn_KI270337v1 297
chrUn_KI270362v1 52
chrUn_KI270363v1 35
chrUn_KI270366v1 33
chrUn_KI270374v1 1
chrUn_KI270384v1 2
chrUn_KI270385v1 2
chrUn_KI270388v1 1
chrUn_KI270392v1 2
chrUn_KI270393v1 2
chrUn_KI270395v1 2
chrUn_KI270411v1 21
chrUn_KI270412v1 7
chrUn_KI270414v1 7
chrUn_KI270417v1 132
chrUn_KI270418v1 35
chrUn_KI270419v1 16
chrUn_KI270420v1 62
chrUn_KI270422v1 34
chrUn_KI270423v1 10
chrUn_KI270424v1 12
chrUn_KI270425v1 2
chrUn_KI270429v1 159
chrUn_KI270435v1 4860
chrUn_KI270438v1 45541
chrUn_KI270442v1 29298
chrUn_KI270448v1 581
chrUn_KI270465v1 73
chrUn_KI270466v1 2928
chrUn_KI270467v1 8194
chrUn_KI270468v1 359
chrUn_KI270507v1 658
chrUn_KI270508v1 264
chrUn_KI270509v1 299
chrUn_KI270510v1 182
chrUn_KI270511v1 566
chrUn_KI270512v1 896
chrUn_KI270515v1 760
chrUn_KI270516v1 145
chrUn_KI270517v1 398
chrUn_KI270518v1 225
chrUn_KI270519v1 6697
chrUn_KI270521v1 269
chrUn_KI270522v1 138
chrUn_KI270528v1 3
chrUn_KI270529v1 14
chrUn_KI270530v1 15
chrUn_KI270538v1 5539
chrUn_KI270539v1 47
chrUn_KI270544v1 28
chrUn_KI270579v1 37
chrUn_KI270580v1 188
chrUn_KI270581v1 6
chrUn_KI270582v1 53
chrUn_KI270583v1 180
chrUn_KI270584v1 636
chrUn_KI270587v1 57
chrUn_KI270588v1 648
chrUn_KI270589v1 673
chrUn_KI270590v1 523
chrUn_KI270591v1 841
chrUn_KI270593v1 255
chrUn_KI270741v1 256
chrUn_KI270742v1 4177
chrUn_KI270743v1 4288
chrUn_KI270744v1 7931
chrUn_KI270745v1 385
chrUn_KI270746v1 4669
chrUn_KI270747v1 444
chrUn_KI270748v1 342
chrUn_KI270749v1 4313
chrUn_KI270750v1 6953
chrUn_KI270751v1 6569
chrUn_KI270753v1 414
chrUn_KI270754v1 1356
chrUn_KI270755v1 382
chrUn_KI270756v1 1592
chrUn_KI270757v1 2906
chrX 8389614
chrY 661599
chrY_KI270740v1_random 500

Fragment lengths

fragments min max mean median
fragments 348835314 7 1992 281.86 214
global fragment-length histogram

Files

Filename Size md5
T303_b10_Esophagus_PCW21.fragments.tsv.gz 3.33 GB 35d6f4a435bd25f255ad37f1ba2c8556
T303_b10_Esophagus_PCW21.fragments.tsv.gz.tbi 1.37 MB be372db9a0ab68736041ebfd6ddce211
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.46 KB 386b84ce1379e4f2b8b0325f919c19ad
statistics/